RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 DNAJC10Q8IXB1 793 aa16.07■□□□□ 0.16
SRP54-203ENST00000553544 NARFQ9UHQ1 456 aa16.07■□□□□ 0.16
SRP54-203ENST00000553544 MYH14Q7Z406 1995 aaKnown RBP16.07■□□□□ 0.16
SRP54-203ENST00000553544 ARFGEF1Q9Y6D6 1849 aa16.06■□□□□ 0.16
SRP54-203ENST00000553544 H0YIN7 160 aa16.06■□□□□ 0.16
SRP54-203ENST00000553544 NFIXQ14938 502 aa16.06■□□□□ 0.16
SRP54-203ENST00000553544 AMER1Q5JTC6 1135 aaPredicted RBP16.06■□□□□ 0.16
SRP54-203ENST00000553544 DPY19L2Q6NUT2 758 aa16.06■□□□□ 0.16
SRP54-203ENST00000553544 BRCA1P38398 1863 aaKnown RBP16.05■□□□□ 0.16
SRP54-203ENST00000553544 PER1O15534 1290 aaPredicted RBP16.05■□□□□ 0.16
SRP54-203ENST00000553544 SERPINB2P05120 415 aa16.05■□□□□ 0.16
SRP54-203ENST00000553544 MORC1Q86VD1 984 aa16.05■□□□□ 0.16
SRP54-203ENST00000553544 C2CD5Q86YS7 1000 aa16.05■□□□□ 0.16
SRP54-203ENST00000553544 KNSTRNQ9Y448 316 aa16.05■□□□□ 0.16
SRP54-203ENST00000553544 SOS1Q07889 1333 aaPredicted RBP16.04■□□□□ 0.16
SRP54-203ENST00000553544 HSPA1AP0DMV8 641 aaKnown RBP16.04■□□□□ 0.16
SRP54-203ENST00000553544 HSPA1BP0DMV9 641 aaKnown RBP16.04■□□□□ 0.16
SRP54-203ENST00000553544 CYP19A1P11511 503 aaPredicted RBP16.04■□□□□ 0.16
SRP54-203ENST00000553544 AKAP4Q5JQC9 854 aa16.04■□□□□ 0.16
SRP54-203ENST00000553544 SLC52A2Q9HAB3 445 aa16.04■□□□□ 0.16
SRP54-203ENST00000553544 COL5A3P25940 1745 aaPredicted RBP16.04■□□□□ 0.16
SRP54-203ENST00000553544 LGR6Q9HBX8 967 aa16.03■□□□□ 0.16
SRP54-203ENST00000553544 IL13P35225 146 aa16.01■□□□□ 0.15
SRP54-203ENST00000553544 SLC39A6Q13433 755 aa16.01■□□□□ 0.15
SRP54-203ENST00000553544 PDZRN3Q9UPQ7 1066 aa16.01■□□□□ 0.15
SRP54-203ENST00000553544 SBF1O95248 1867 aa16■□□□□ 0.15
SRP54-203ENST00000553544 POTECB2RU33 542 aa16■□□□□ 0.15
SRP54-203ENST00000553544 VSIG10Q8N0Z9 540 aa16■□□□□ 0.15
SRP54-203ENST00000553544 ZNF622Q969S3 477 aaKnown RBP eCLIP16■□□□□ 0.15
SRP54-203ENST00000553544 A0A087WZG4 1122 aa15.99■□□□□ 0.15
SRP54-203ENST00000553544 NFKBIEO00221 500 aa15.99■□□□□ 0.15
SRP54-203ENST00000553544 RNMTO43148 476 aaKnown RBP15.99■□□□□ 0.15
SRP54-203ENST00000553544 CANXP27824 592 aaKnown RBP15.99■□□□□ 0.15
SRP54-203ENST00000553544 BCL2L12Q9HB09 334 aa15.99■□□□□ 0.15
SRP54-203ENST00000553544 ZBTB1Q9Y2K1 713 aa15.99■□□□□ 0.15
SRP54-203ENST00000553544 COL15A1P39059 1388 aa15.99■□□□□ 0.15
SRP54-203ENST00000553544 TNRC6CQ9HCJ0 1690 aaKnown RBP15.99■□□□□ 0.15
SRP54-203ENST00000553544 STARD3NLO95772 234 aa15.98■□□□□ 0.15
SRP54-203ENST00000553544 PDE6BP35913 854 aa15.98■□□□□ 0.15
SRP54-203ENST00000553544 ERFEQ4G0M1 354 aa15.98■□□□□ 0.15
SRP54-203ENST00000553544 BICDL1Q6ZP65 573 aa15.98■□□□□ 0.15
SRP54-203ENST00000553544 BRIP1Q9BX63 1249 aa15.98■□□□□ 0.15
SRP54-203ENST00000553544 VIRMAQ69YN4 1812 aaKnown RBP15.97■□□□□ 0.15
SRP54-203ENST00000553544 C21orf2O43822 256 aa15.97■□□□□ 0.15
SRP54-203ENST00000553544 CREBZFQ9NS37 354 aa15.97■□□□□ 0.15
SRP54-203ENST00000553544 EIF5P55010 431 aaKnown RBP15.96■□□□□ 0.15
SRP54-203ENST00000553544 CHADLQ6NUI6 762 aa15.96■□□□□ 0.15
SRP54-203ENST00000553544 ZNF219Q9P2Y4 722 aaPredicted RBP15.96■□□□□ 0.15
SRP54-203ENST00000553544 NPC1L1Q9UHC9 1359 aa15.96■□□□□ 0.15
SRP54-203ENST00000553544 TTC5Q8N0Z6 440 aa15.94■□□□□ 0.14
SRP54-203ENST00000553544 TEX13AQ9BXU3 409 aaPredicted RBP15.94■□□□□ 0.14
SRP54-203ENST00000553544 MKRN1Q9UHC7 482 aaKnown RBP15.94■□□□□ 0.14
SRP54-203ENST00000553544 HMOX1P09601 288 aa15.93■□□□□ 0.14
SRP54-203ENST00000553544 MTHFSDQ2M296 383 aaKnown RBP15.93■□□□□ 0.14
SRP54-203ENST00000553544 CC2D1BQ5T0F9 858 aaKnown RBP15.93■□□□□ 0.14
SRP54-203ENST00000553544 TBC1D9BQ66K14 1250 aa15.93■□□□□ 0.14
SRP54-203ENST00000553544 NPM2Q86SE8 214 aaKnown RBP15.93■□□□□ 0.14
SRP54-203ENST00000553544 CNKSR1Q969H4 720 aa15.93■□□□□ 0.14
SRP54-203ENST00000553544 TJP1Q07157 1748 aa15.93■□□□□ 0.14
SRP54-203ENST00000553544 DDNO94850 711 aaPredicted RBP15.92■□□□□ 0.14
SRP54-203ENST00000553544 TAOK3Q9H2K8 898 aa15.92■□□□□ 0.14
SRP54-203ENST00000553544 TBC1D2BQ9UPU7 963 aa15.92■□□□□ 0.14
SRP54-203ENST00000553544 ADAMTS7Q9UKP4 1686 aa15.92■□□□□ 0.14
SRP54-203ENST00000553544 LTBP3Q9NS15 1303 aa15.92■□□□□ 0.14
SRP54-203ENST00000553544 NPHP1O15259 732 aa15.91■□□□□ 0.14
SRP54-203ENST00000553544 SOGA3Q5TF21 947 aa15.91■□□□□ 0.14
SRP54-203ENST00000553544 PRR5LQ6MZQ0 368 aa15.91■□□□□ 0.14
SRP54-203ENST00000553544 SETDB2Q96T68 719 aa15.91■□□□□ 0.14
SRP54-203ENST00000553544 CARMIL3Q8ND23 1372 aa15.9■□□□□ 0.14
SRP54-203ENST00000553544 IQCA1LA6NCM1 817 aa15.9■□□□□ 0.14
SRP54-203ENST00000553544 STYK1Q6J9G0 422 aa15.9■□□□□ 0.14
SRP54-203ENST00000553544 CCDC24Q8N4L8 307 aa15.9■□□□□ 0.14
SRP54-203ENST00000553544 ZNF330Q9Y3S2 320 aaPredicted RBP15.9■□□□□ 0.14
SRP54-203ENST00000553544 IL6STP40189 918 aaPredicted RBP15.89■□□□□ 0.13
SRP54-203ENST00000553544 PRDM10Q9NQV6 1147 aa15.89■□□□□ 0.13
SRP54-203ENST00000553544 AFDNP55196 1824 aaKnown RBP15.89■□□□□ 0.13
SRP54-203ENST00000553544 NRXN2Q9P2S2 1712 aa15.88■□□□□ 0.13
SRP54-203ENST00000553544 SCN11AQ9UI33 1791 aa15.88■□□□□ 0.13
SRP54-203ENST00000553544 FOXN1O15353 648 aa15.88■□□□□ 0.13
SRP54-203ENST00000553544 DIAPH1O60610 1272 aaKnown RBP15.88■□□□□ 0.13
SRP54-203ENST00000553544 POTEIP0CG38 1075 aa15.88■□□□□ 0.13
SRP54-203ENST00000553544 POTEJP0CG39 1038 aa15.88■□□□□ 0.13
SRP54-203ENST00000553544 TEFQ10587 303 aa15.88■□□□□ 0.13
SRP54-203ENST00000553544 ZNF790Q6PG37 636 aa15.88■□□□□ 0.13
SRP54-203ENST00000553544 LDHDQ86WU2 507 aa15.88■□□□□ 0.13
SRP54-203ENST00000553544 CNBD1Q8NA66 436 aa15.88■□□□□ 0.13
SRP54-203ENST00000553544 AIDAQ96BJ3 306 aa15.88■□□□□ 0.13
SRP54-203ENST00000553544 MASTLQ96GX5 879 aa15.88■□□□□ 0.13
SRP54-203ENST00000553544 ZNF496Q96IT1 587 aaPredicted RBP15.88■□□□□ 0.13
SRP54-203ENST00000553544 SRGNP10124 158 aa15.87■□□□□ 0.13
SRP54-203ENST00000553544 CTCFP49711 727 aaPredicted RBP15.87■□□□□ 0.13
SRP54-203ENST00000553544 ST5P78524 1137 aa15.87■□□□□ 0.13
SRP54-203ENST00000553544 PRPF40BQ6NWY9 871 aaKnown RBP15.87■□□□□ 0.13
SRP54-203ENST00000553544 CNTNAP1P78357 1384 aa15.87■□□□□ 0.13
SRP54-203ENST00000553544 TMEM88BA6NKF7 163 aa15.86■□□□□ 0.13
SRP54-203ENST00000553544 L3MBTL3Q96JM7 780 aaPredicted RBP15.86■□□□□ 0.13
SRP54-203ENST00000553544 TAF1DQ9H5J8 278 aaPredicted RBP15.86■□□□□ 0.13
SRP54-203ENST00000553544 PASKQ96RG2 1323 aa15.86■□□□□ 0.13
SRP54-203ENST00000553544 MRC1P22897 1456 aa15.85■□□□□ 0.13
SRP54-203ENST00000553544 CCDC88AQ3V6T2 1871 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms