RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 CDC42BPAQ5VT25 1732 aa19.34■□□□□ 0.69
CUX1-213ENST00000549414 GCP02774 474 aa19.34■□□□□ 0.69
CUX1-213ENST00000549414 PLEKHM2Q8IWE5 1019 aa19.34■□□□□ 0.69
CUX1-213ENST00000549414 TBX22Q9Y458 520 aa19.34■□□□□ 0.69
CUX1-213ENST00000549414 CHD1O14646 1710 aa19.34■□□□□ 0.69
CUX1-213ENST00000549414 STK38Q15208 465 aa19.34■□□□□ 0.69
CUX1-213ENST00000549414 CWF19L2Q2TBE0 894 aaKnown RBP19.34■□□□□ 0.69
CUX1-213ENST00000549414 METTL24Q5JXM2 366 aa19.34■□□□□ 0.69
CUX1-213ENST00000549414 SNRKQ9NRH2 765 aa19.34■□□□□ 0.69
CUX1-213ENST00000549414 SF3B2Q13435 895 aaKnown RBP19.33■□□□□ 0.69
CUX1-213ENST00000549414 TCEANC2Q96MN5 208 aa19.33■□□□□ 0.69
CUX1-213ENST00000549414 EDC4Q6P2E9 1401 aaKnown RBP19.33■□□□□ 0.69
CUX1-213ENST00000549414 ATP8B2P98198 1209 aa19.33■□□□□ 0.68
CUX1-213ENST00000549414 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.33■□□□□ 0.688e-7■■■□□ 15.1
CUX1-213ENST00000549414 STARD3NLO95772 234 aa19.33■□□□□ 0.68
CUX1-213ENST00000549414 ME1P48163 572 aa19.33■□□□□ 0.68
CUX1-213ENST00000549414 CCDC173Q0VFZ6 552 aa19.33■□□□□ 0.68
CUX1-213ENST00000549414 ORAI2Q96SN7 254 aa19.32■□□□□ 0.68
CUX1-213ENST00000549414 KDM5DQ9BY66 1539 aa19.32■□□□□ 0.68
CUX1-213ENST00000549414 IFIT1P09914 478 aaKnown RBP19.32■□□□□ 0.68
CUX1-213ENST00000549414 ANKRD13DQ6ZTN6 518 aa19.32■□□□□ 0.68
CUX1-213ENST00000549414 CCAR2Q8N163 923 aaKnown RBP19.32■□□□□ 0.68
CUX1-213ENST00000549414 ZSCAN31Q96LW9 406 aaPredicted RBP19.32■□□□□ 0.68
CUX1-213ENST00000549414 SBNO2Q9Y2G9 1366 aa19.32■□□□□ 0.68
CUX1-213ENST00000549414 BAG4O95429 457 aaKnown RBP19.31■□□□□ 0.68
CUX1-213ENST00000549414 NFATC2IPQ8NCF5 419 aa19.31■□□□□ 0.68
CUX1-213ENST00000549414 CCDC39Q9UFE4 941 aa19.31■□□□□ 0.68
CUX1-213ENST00000549414 MSH6P52701 1360 aa19.31■□□□□ 0.68
CUX1-213ENST00000549414 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.31■□□□□ 0.68
CUX1-213ENST00000549414 SPATA32Q96LK8 384 aa19.31■□□□□ 0.68
CUX1-213ENST00000549414 SART3Q15020 963 aaKnown RBP19.3■□□□□ 0.68
CUX1-213ENST00000549414 AKAP4Q5JQC9 854 aa19.3■□□□□ 0.68
CUX1-213ENST00000549414 TNMDQ9H2S6 317 aa19.3■□□□□ 0.68
CUX1-213ENST00000549414 CHL1O00533 1208 aa19.3■□□□□ 0.68
CUX1-213ENST00000549414 CADPS2Q86UW7 1296 aa19.3■□□□□ 0.68
CUX1-213ENST00000549414 BCORL1Q5H9F3 1711 aa19.3■□□□□ 0.68
CUX1-213ENST00000549414 TRPM2O94759 1503 aa19.29■□□□□ 0.68
CUX1-213ENST00000549414 SNRPA1P09661 255 aaKnown RBP19.29■□□□□ 0.68
CUX1-213ENST00000549414 LIMCH1Q9UPQ0 1083 aa19.29■□□□□ 0.68
CUX1-213ENST00000549414 GOLIM4O00461 696 aa19.29■□□□□ 0.68
CUX1-213ENST00000549414 TMX3Q96JJ7 454 aa19.29■□□□□ 0.68
CUX1-213ENST00000549414 ABCF2Q9UG63 623 aa19.29■□□□□ 0.68
CUX1-213ENST00000549414 ZNF521Q96K83 1311 aa19.29■□□□□ 0.68
CUX1-213ENST00000549414 KDM5AP29375 1690 aaKnown RBP19.29■□□□□ 0.68
CUX1-213ENST00000549414 KRT32Q14532 448 aa19.29■□□□□ 0.68
CUX1-213ENST00000549414 ESYT1Q9BSJ8 1104 aa19.29■□□□□ 0.68
CUX1-213ENST00000549414 LGR6Q9HBX8 967 aa19.29■□□□□ 0.68
CUX1-213ENST00000549414 ZCCHC11Q5TAX3 1644 aaKnown RBP19.28■□□□□ 0.68
CUX1-213ENST00000549414 ESPNB1AK53 854 aa19.28■□□□□ 0.68
CUX1-213ENST00000549414 GUCY1B3Q02153 619 aa19.28■□□□□ 0.68
CUX1-213ENST00000549414 CAMK4Q16566 473 aa19.28■□□□□ 0.68
CUX1-213ENST00000549414 PRDM15P57071 1507 aaPredicted RBP19.28■□□□□ 0.68
CUX1-213ENST00000549414 RBM27Q9P2N5 1060 aaKnown RBP19.28■□□□□ 0.68
CUX1-213ENST00000549414 MAP3K5Q99683 1374 aa19.28■□□□□ 0.68
CUX1-213ENST00000549414 DDX46Q7L014 1031 aaKnown RBP19.28■□□□□ 0.68
CUX1-213ENST00000549414 HOMER1Q86YM7 354 aa19.28■□□□□ 0.68
CUX1-213ENST00000549414 NUP133Q8WUM0 1156 aa19.28■□□□□ 0.68
CUX1-213ENST00000549414 INSRP06213 1382 aa19.28■□□□□ 0.68
CUX1-213ENST00000549414 NEO1Q92859 1461 aa19.27■□□□□ 0.68
CUX1-213ENST00000549414 GRM8O00222 908 aa19.27■□□□□ 0.68
CUX1-213ENST00000549414 EVI5LQ96CN4 794 aa19.27■□□□□ 0.68
CUX1-213ENST00000549414 METP08581 1390 aa19.27■□□□□ 0.67
CUX1-213ENST00000549414 CCDC192P0DO97 292 aa19.27■□□□□ 0.67
CUX1-213ENST00000549414 IFIT5Q13325 482 aaKnown RBP19.27■□□□□ 0.67
CUX1-213ENST00000549414 KSR2Q6VAB6 950 aa19.27■□□□□ 0.67
CUX1-213ENST00000549414 TRMT2AQ8IZ69 625 aaKnown RBP19.27■□□□□ 0.67
CUX1-213ENST00000549414 TRMT112Q9UI30 125 aaKnown RBP19.27■□□□□ 0.67
CUX1-213ENST00000549414 LETM1O95202 739 aaPredicted RBP19.26■□□□□ 0.67
CUX1-213ENST00000549414 ZNF396Q96N95 335 aaPredicted RBP19.26■□□□□ 0.67
CUX1-213ENST00000549414 TDO2P48775 406 aa19.25■□□□□ 0.67
CUX1-213ENST00000549414 IP6K1Q92551 441 aa19.25■□□□□ 0.67
CUX1-213ENST00000549414 TFIP11Q9UBB9 837 aaKnown RBP19.25■□□□□ 0.67
CUX1-213ENST00000549414 NECAB1Q8N987 351 aa19.25■□□□□ 0.67
CUX1-213ENST00000549414 ANO8Q9HCE9 1232 aaPredicted RBP19.25■□□□□ 0.67
CUX1-213ENST00000549414 LRP2BPQ9P2M1 347 aa19.25■□□□□ 0.67
CUX1-213ENST00000549414 TMEM2Q9UHN6 1383 aa19.25■□□□□ 0.67
CUX1-213ENST00000549414 TPM3P06753 285 aa19.25■□□□□ 0.67
CUX1-213ENST00000549414 CCT2P78371 535 aaKnown RBP19.25■□□□□ 0.67
CUX1-213ENST00000549414 PLEKHF1Q96S99 279 aa19.24■□□□□ 0.67
CUX1-213ENST00000549414 CTNNA3Q9UI47 895 aa19.24■□□□□ 0.67
CUX1-213ENST00000549414 UBAP1LF5GYI3 381 aa19.24■□□□□ 0.67
CUX1-213ENST00000549414 ZGPATQ8N5A5 531 aaKnown RBP19.24■□□□□ 0.67
CUX1-213ENST00000549414 RAI14Q9P0K7 980 aa19.24■□□□□ 0.67
CUX1-213ENST00000549414 HOOK1Q9UJC3 728 aaKnown RBP19.24■□□□□ 0.67
CUX1-213ENST00000549414 LMBR1LQ6UX01 489 aa19.24■□□□□ 0.67
CUX1-213ENST00000549414 HAND2P61296 217 aa19.23■□□□□ 0.67
CUX1-213ENST00000549414 NACAP1Q9BZK3 213 aa19.23■□□□□ 0.67
CUX1-213ENST00000549414 NUP62CLQ9H1M0 184 aa19.23■□□□□ 0.67
CUX1-213ENST00000549414 DDX17Q92841 729 aaKnown RBP19.23■□□□□ 0.67
CUX1-213ENST00000549414 CWC25Q9NXE8 425 aaPredicted RBP19.23■□□□□ 0.67
CUX1-213ENST00000549414 IMMTQ16891 758 aaKnown RBP19.23■□□□□ 0.67
CUX1-213ENST00000549414 AIDAQ96BJ3 306 aa19.23■□□□□ 0.67
CUX1-213ENST00000549414 SMC2O95347 1197 aa19.23■□□□□ 0.67
CUX1-213ENST00000549414 RAB11FIP4Q86YS3 637 aa19.23■□□□□ 0.67
CUX1-213ENST00000549414 PIBF1Q8WXW3 757 aa19.23■□□□□ 0.67
CUX1-213ENST00000549414 LRRC2Q9BYS8 371 aa19.23■□□□□ 0.67
CUX1-213ENST00000549414 U3KPZ7 1027 aaPredicted RBP19.23■□□□□ 0.67
CUX1-213ENST00000549414 PDE4CQ08493 712 aa19.22■□□□□ 0.67
CUX1-213ENST00000549414 CCDC82Q8N4S0 544 aa19.22■□□□□ 0.67
CUX1-213ENST00000549414 GNL3LQ9NVN8 582 aaKnown RBP19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms