RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-223ENST00000544669 PPP1R9BQ96SB3 815 aa15.81■□□□□ 0.12
CPSF7-223ENST00000544669 RGPD8O14715 1765 aaPredicted RBP15.81■□□□□ 0.12
CPSF7-223ENST00000544669 PLEKHG2Q9H7P9 1386 aa15.81■□□□□ 0.12
CPSF7-223ENST00000544669 GLRX3O76003 335 aaKnown RBP15.8■□□□□ 0.12
CPSF7-223ENST00000544669 DDX58O95786 925 aaKnown RBP15.8■□□□□ 0.12
CPSF7-223ENST00000544669 BEND3Q5T5X7 828 aa15.8■□□□□ 0.12
CPSF7-223ENST00000544669 HIP1O00291 1037 aa15.8■□□□□ 0.12
CPSF7-223ENST00000544669 SRGAP3O43295 1099 aa15.8■□□□□ 0.12
CPSF7-223ENST00000544669 HSPA4P34932 840 aa15.8■□□□□ 0.12
CPSF7-223ENST00000544669 HYPKQ9NX55 129 aa15.8■□□□□ 0.12
CPSF7-223ENST00000544669 NFAT5O94916 1531 aa15.79■□□□□ 0.12
CPSF7-223ENST00000544669 ESPNB1AK53 854 aa15.79■□□□□ 0.12
CPSF7-223ENST00000544669 PHF14O94880 888 aa15.79■□□□□ 0.12
CPSF7-223ENST00000544669 NUTM2GQ5VZR2 741 aa15.79■□□□□ 0.12
CPSF7-223ENST00000544669 ZNF530Q6P9A1 599 aaPredicted RBP15.79■□□□□ 0.12
CPSF7-223ENST00000544669 CLASRPQ8N2M8 674 aaKnown RBP15.79■□□□□ 0.12
CPSF7-223ENST00000544669 PANK2Q9BZ23 570 aa15.79■□□□□ 0.12
CPSF7-223ENST00000544669 MARF1Q9Y4F3 1742 aaKnown RBP15.79■□□□□ 0.12
CPSF7-223ENST00000544669 WDR33Q9C0J8 1336 aaKnown RBP15.78■□□□□ 0.12
CPSF7-223ENST00000544669 NBPF6Q5VWK0 638 aa15.78■□□□□ 0.12
CPSF7-223ENST00000544669 NBPF4Q96M43 638 aa15.78■□□□□ 0.12
CPSF7-223ENST00000544669 ATP6V1DQ9Y5K8 247 aa15.78■□□□□ 0.12
CPSF7-223ENST00000544669 BRD1O95696 1058 aa15.78■□□□□ 0.12
CPSF7-223ENST00000544669 EIF2S2P20042 333 aaKnown RBP15.78■□□□□ 0.12
CPSF7-223ENST00000544669 ESCO1Q5FWF5 840 aa15.78■□□□□ 0.12
CPSF7-223ENST00000544669 NECTIN2Q92692 538 aa15.78■□□□□ 0.12
CPSF7-223ENST00000544669 ARXQ96QS3 562 aa15.78■□□□□ 0.12
CPSF7-223ENST00000544669 PI4KAP2A4QPH2 592 aa15.77■□□□□ 0.11
CPSF7-223ENST00000544669 KSR2Q6VAB6 950 aa15.77■□□□□ 0.11
CPSF7-223ENST00000544669 PI4KAP1Q8N8J0 262 aa15.77■□□□□ 0.11
CPSF7-223ENST00000544669 PHAXQ9H814 394 aaKnown RBP15.77■□□□□ 0.11
CPSF7-223ENST00000544669 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.77■□□□□ 0.11
CPSF7-223ENST00000544669 CHD2O14647 1828 aaKnown RBP15.77■□□□□ 0.11
CPSF7-223ENST00000544669 SGSM2O43147 1006 aa15.76■□□□□ 0.11
CPSF7-223ENST00000544669 PRPF40AO75400 957 aaKnown RBP15.76■□□□□ 0.11
CPSF7-223ENST00000544669 PLEKHG5O94827 1062 aa15.76■□□□□ 0.11
CPSF7-223ENST00000544669 ZSCAN23Q3MJ62 389 aa15.76■□□□□ 0.11
CPSF7-223ENST00000544669 ARHGEF25Q86VW2 580 aa15.76■□□□□ 0.11
CPSF7-223ENST00000544669 GAS2L3Q86XJ1 694 aa15.76■□□□□ 0.11
CPSF7-223ENST00000544669 RRAGDQ9NQL2 400 aaPredicted RBP15.76■□□□□ 0.11
CPSF7-223ENST00000544669 CHPF2Q9P2E5 772 aa15.76■□□□□ 0.11
CPSF7-223ENST00000544669 RAD50Q92878 1312 aa15.76■□□□□ 0.11
CPSF7-223ENST00000544669 RNMTO43148 476 aaKnown RBP15.75■□□□□ 0.11
CPSF7-223ENST00000544669 OS9Q13438 667 aaPredicted RBP15.75■□□□□ 0.11
CPSF7-223ENST00000544669 CSPP1Q1MSJ5 1256 aa15.75■□□□□ 0.11
CPSF7-223ENST00000544669 ZGPATQ8N5A5 531 aaKnown RBP15.75■□□□□ 0.11
CPSF7-223ENST00000544669 C9orf78Q9NZ63 289 aaPredicted RBP15.75■□□□□ 0.11
CPSF7-223ENST00000544669 LETM1O95202 739 aaPredicted RBP15.75■□□□□ 0.11
CPSF7-223ENST00000544669 GCP02774 474 aa15.75■□□□□ 0.11
CPSF7-223ENST00000544669 CAVIN1Q6NZI2 390 aaKnown RBP15.75■□□□□ 0.11
CPSF7-223ENST00000544669 PI4K2BQ8TCG2 481 aa15.75■□□□□ 0.11
CPSF7-223ENST00000544669 ZSCAN31Q96LW9 406 aaPredicted RBP15.75■□□□□ 0.11
CPSF7-223ENST00000544669 LMO7Q8WWI1 1683 aa15.75■□□□□ 0.11
CPSF7-223ENST00000544669 LINS1Q8NG48 757 aa15.74■□□□□ 0.11
CPSF7-223ENST00000544669 HEG1Q9ULI3 1381 aa15.74■□□□□ 0.11
CPSF7-223ENST00000544669 TM6SF1Q9BZW5 370 aa15.73■□□□□ 0.11
CPSF7-223ENST00000544669 LGR6Q9HBX8 967 aa15.73■□□□□ 0.11
CPSF7-223ENST00000544669 IL1RAPL2Q9NP60 686 aa15.73■□□□□ 0.11
CPSF7-223ENST00000544669 DIAPH3Q9NSV4 1193 aa15.73■□□□□ 0.11
CPSF7-223ENST00000544669 ECHDC1Q9NTX5 307 aa15.73■□□□□ 0.11
CPSF7-223ENST00000544669 ZDHHC9Q9Y397 364 aa15.73■□□□□ 0.11
CPSF7-223ENST00000544669 LTN1O94822 1766 aa15.73■□□□□ 0.11
CPSF7-223ENST00000544669 KDM3BQ7LBC6 1761 aa15.73■□□□□ 0.11
CPSF7-223ENST00000544669 SLIT3O75094 1523 aa15.73■□□□□ 0.11
CPSF7-223ENST00000544669 MST1RQ04912 1400 aa15.73■□□□□ 0.11
CPSF7-223ENST00000544669 GIGYF1O75420 1035 aaPredicted RBP15.73■□□□□ 0.11
CPSF7-223ENST00000544669 IFIT2P09913 472 aaKnown RBP15.73■□□□□ 0.11
CPSF7-223ENST00000544669 LRSAM1Q6UWE0 723 aa15.73■□□□□ 0.11
CPSF7-223ENST00000544669 USHBP1Q8N6Y0 703 aa15.73■□□□□ 0.11
CPSF7-223ENST00000544669 EVI5LQ96CN4 794 aa15.73■□□□□ 0.11
CPSF7-223ENST00000544669 ZNF142P52746 1687 aaPredicted RBP15.73■□□□□ 0.11
CPSF7-223ENST00000544669 NBPF7P0C2Y1 421 aaPredicted RBP15.72■□□□□ 0.11
CPSF7-223ENST00000544669 NUTM1Q86Y26 1132 aa15.72■□□□□ 0.11
CPSF7-223ENST00000544669 SH2B1Q9NRF2 756 aaPredicted RBP15.72■□□□□ 0.11
CPSF7-223ENST00000544669 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.72■□□□□ 0.114e-9■■■□□ 15.2
CPSF7-223ENST00000544669 LIMCH1Q9UPQ0 1083 aa15.72■□□□□ 0.11
CPSF7-223ENST00000544669 UTYO14607 1347 aa15.72■□□□□ 0.11
CPSF7-223ENST00000544669 MCM5P33992 734 aa15.71■□□□□ 0.11
CPSF7-223ENST00000544669 ZSCAN30Q86W11 494 aa15.71■□□□□ 0.11
CPSF7-223ENST00000544669 DDX21Q9NR30 783 aaKnown RBP eCLIP15.71■□□□□ 0.11
CPSF7-223ENST00000544669 TUBGCP6Q96RT7 1819 aa15.71■□□□□ 0.11
CPSF7-223ENST00000544669 ZKSCAN1P17029 563 aaPredicted RBP15.71■□□□□ 0.1
CPSF7-223ENST00000544669 MSNP26038 577 aaKnown RBP15.71■□□□□ 0.1
CPSF7-223ENST00000544669 NEXNQ0ZGT2 675 aa15.71■□□□□ 0.1
CPSF7-223ENST00000544669 FAM184AQ8NB25 1140 aa15.71■□□□□ 0.1
CPSF7-223ENST00000544669 ANKRD24Q8TF21 1146 aa15.71■□□□□ 0.1
CPSF7-223ENST00000544669 G3BP1Q13283 466 aaKnown RBP eCLIP15.7■□□□□ 0.1
CPSF7-223ENST00000544669 TSHZ3Q63HK5 1081 aa15.7■□□□□ 0.1
CPSF7-223ENST00000544669 LARP1Q6PKG0 1096 aaKnown RBP15.7■□□□□ 0.1
CPSF7-223ENST00000544669 PALD1Q9ULE6 856 aa15.7■□□□□ 0.1
CPSF7-223ENST00000544669 MAP3K2Q9Y2U5 619 aa15.7■□□□□ 0.1
CPSF7-223ENST00000544669 ADCY9O60503 1353 aa15.7■□□□□ 0.1
CPSF7-223ENST00000544669 PSMA5P28066 241 aa15.69■□□□□ 0.1
CPSF7-223ENST00000544669 VPS53Q5VIR6 699 aa15.69■□□□□ 0.1
CPSF7-223ENST00000544669 MPRIPQ6WCQ1 1025 aa15.69■□□□□ 0.1
CPSF7-223ENST00000544669 TICAM2Q86XR7 235 aa15.69■□□□□ 0.1
CPSF7-223ENST00000544669 TMEM87AQ8NBN3 555 aa15.69■□□□□ 0.1
CPSF7-223ENST00000544669 LSG1Q9H089 658 aaKnown RBP15.69■□□□□ 0.1
CPSF7-223ENST00000544669 NPHP4O75161 1426 aaPredicted RBP15.69■□□□□ 0.1
CPSF7-223ENST00000544669 PKP1Q13835 747 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms