RNA–Protein interactions for RNA: ENST00000544363.5

CCM2-219, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,620 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-219ENST00000544363 ATG3Q9NT62 314 aa38.6■■■■□ 3.77
CCM2-219ENST00000544363 ASAP1Q9ULH1 1129 aa38.6■■■■□ 3.77
CCM2-219ENST00000544363 INTS3Q68E01 1043 aaKnown RBP38.6■■■■□ 3.77
CCM2-219ENST00000544363 SYTL4Q96C24 671 aaPredicted RBP38.6■■■■□ 3.77
CCM2-219ENST00000544363 QTRT2Q9H974 415 aaKnown RBP38.6■■■■□ 3.77
CCM2-219ENST00000544363 USP16Q9Y5T5 823 aa38.6■■■■□ 3.77
CCM2-219ENST00000544363 KAT6BQ8WYB5 2073 aa38.59■■■■□ 3.77
CCM2-219ENST00000544363 ONECUT3O60422 494 aaPredicted RBP38.58■■■■□ 3.77
CCM2-219ENST00000544363 PTCD1O75127 700 aaKnown RBP38.58■■■■□ 3.77
CCM2-219ENST00000544363 DDX21Q9NR30 783 aaKnown RBP eCLIP38.58■■■■□ 3.77
CCM2-219ENST00000544363 LAMB4A4D0S4 1761 aa38.57■■■■□ 3.76
CCM2-219ENST00000544363 ANXA1P04083 346 aa38.56■■■■□ 3.76
CCM2-219ENST00000544363 CHMP4BQ9H444 224 aaKnown RBP38.56■■■■□ 3.76
CCM2-219ENST00000544363 HYPKQ9NX55 129 aa38.56■■■■□ 3.76
CCM2-219ENST00000544363 PDIA6Q15084 440 aa38.56■■■■□ 3.76
CCM2-219ENST00000544363 F6X3S4 739 aa38.55■■■■□ 3.76
CCM2-219ENST00000544363 PROSER3Q2NL68 480 aa38.55■■■■□ 3.76
CCM2-219ENST00000544363 ACSBG1Q96GR2 724 aa38.54■■■■□ 3.76
CCM2-219ENST00000544363 ZBTB40Q9NUA8 1239 aa38.54■■■■□ 3.76
CCM2-219ENST00000544363 ZBTB7BO15156 539 aaPredicted RBP38.53■■■■□ 3.76
CCM2-219ENST00000544363 FBXO41Q8TF61 875 aa38.52■■■■□ 3.76
CCM2-219ENST00000544363 VSIG10Q8N0Z9 540 aa38.52■■■■□ 3.76
CCM2-219ENST00000544363 CCT4P50991 539 aaKnown RBP38.5■■■■□ 3.75
CCM2-219ENST00000544363 SLC4A10Q6U841 1118 aa38.49■■■■□ 3.75
CCM2-219ENST00000544363 PCDHB15Q9Y5E8 787 aa38.49■■■■□ 3.75
CCM2-219ENST00000544363 ERBB4Q15303 1308 aa38.48■■■■□ 3.75
CCM2-219ENST00000544363 PXDNLA1KZ92 1463 aa38.48■■■■□ 3.75
CCM2-219ENST00000544363 SEPT12Q8IYM1 358 aa38.47■■■■□ 3.75
CCM2-219ENST00000544363 RBM42Q9BTD8 480 aaKnown RBP38.47■■■■□ 3.75
CCM2-219ENST00000544363 TEX13AQ9BXU3 409 aaPredicted RBP38.47■■■■□ 3.75
CCM2-219ENST00000544363 KDM2BQ8NHM5 1336 aa38.45■■■■□ 3.75
CCM2-219ENST00000544363 MYL6BP14649 208 aa38.45■■■■□ 3.75
CCM2-219ENST00000544363 ZNF772Q68DY9 489 aaPredicted RBP38.45■■■■□ 3.75
CCM2-219ENST00000544363 LRP10Q7Z4F1 713 aa38.44■■■■□ 3.74
CCM2-219ENST00000544363 PI4KAP2A4QPH2 592 aa38.43■■■■□ 3.74
CCM2-219ENST00000544363 CENPQQ7L2Z9 268 aaPredicted RBP38.43■■■■□ 3.74
CCM2-219ENST00000544363 PI4KAP1Q8N8J0 262 aa38.43■■■■□ 3.74
CCM2-219ENST00000544363 KCNQ2O43526 872 aa38.41■■■■□ 3.74
CCM2-219ENST00000544363 ADCY9O60503 1353 aa38.41■■■■□ 3.74
CCM2-219ENST00000544363 DNAAF4Q8WXU2 420 aa38.41■■■■□ 3.74
CCM2-219ENST00000544363 N4BP2Q86UW6 1770 aaPredicted RBP38.41■■■■□ 3.74
CCM2-219ENST00000544363 DDX58O95786 925 aaKnown RBP38.41■■■■□ 3.74
CCM2-219ENST00000544363 KSR2Q6VAB6 950 aa38.41■■■■□ 3.74
CCM2-219ENST00000544363 DNAJC10Q8IXB1 793 aa38.4■■■■□ 3.74
CCM2-219ENST00000544363 SLC4A9Q96Q91 983 aa38.39■■■■□ 3.74
CCM2-219ENST00000544363 NBPF26B4DH59 902 aa38.38■■■■□ 3.74
CCM2-219ENST00000544363 IGHDP01880 384 aa38.38■■■■□ 3.74
CCM2-219ENST00000544363 PIP4K2AP48426 406 aaPredicted RBP38.38■■■■□ 3.74
CCM2-219ENST00000544363 AIMP1Q12904 312 aaKnown RBP38.38■■■■□ 3.74
CCM2-219ENST00000544363 NBPF14Q5TI25 921 aa38.38■■■■□ 3.74
CCM2-219ENST00000544363 NBPF10Q6P3W6 841 aaKnown RBP38.38■■■■□ 3.74
CCM2-219ENST00000544363 NBPF15Q8N660 670 aa38.38■■■■□ 3.74
CCM2-219ENST00000544363 XAGE3Q8WTP9 111 aa38.38■■■■□ 3.74
CCM2-219ENST00000544363 A1BGP04217 495 aa38.38■■■■□ 3.73
CCM2-219ENST00000544363 COPS6Q7L5N1 327 aa38.38■■■■□ 3.73
CCM2-219ENST00000544363 PELP1Q8IZL8 1130 aaKnown RBP38.38■■■■□ 3.73
CCM2-219ENST00000544363 STARD3NLO95772 234 aa38.36■■■■□ 3.73
CCM2-219ENST00000544363 SMARCC1Q92922 1105 aaPredicted RBP38.36■■■■□ 3.73
CCM2-219ENST00000544363 MAP3K2Q9Y2U5 619 aa38.36■■■■□ 3.73
CCM2-219ENST00000544363 ATP10DQ9P241 1426 aa38.34■■■■□ 3.73
CCM2-219ENST00000544363 RWDD1Q9H446 243 aaPredicted RBP38.34■■■■□ 3.73
CCM2-219ENST00000544363 BEND3Q5T5X7 828 aa38.34■■■■□ 3.73
CCM2-219ENST00000544363 MEIS3Q99687 375 aa38.34■■■■□ 3.73
CCM2-219ENST00000544363 SRCIN1Q9C0H9 1055 aa38.34■■■■□ 3.73
CCM2-219ENST00000544363 RBM6P78332 1123 aaKnown RBP38.33■■■■□ 3.73
CCM2-219ENST00000544363 FAM182BQ5T319 152 aa38.33■■■■□ 3.73
CCM2-219ENST00000544363 PALLDQ8WX93 1383 aa38.32■■■■□ 3.72
CCM2-219ENST00000544363 C1orf115Q9H7X2 142 aa38.31■■■■□ 3.72
CCM2-219ENST00000544363 NHSQ6T4R5 1651 aa38.31■■■■□ 3.72
CCM2-219ENST00000544363 HDAC1Q13547 482 aaPredicted RBP38.3■■■■□ 3.72
CCM2-219ENST00000544363 TJP1Q07157 1748 aa38.3■■■■□ 3.72
CCM2-219ENST00000544363 CYP19A1P11511 503 aaPredicted RBP38.3■■■■□ 3.72
CCM2-219ENST00000544363 ANKRD13DQ6ZTN6 518 aa38.3■■■■□ 3.72
CCM2-219ENST00000544363 RIC3Q7Z5B4 369 aa38.3■■■■□ 3.72
CCM2-219ENST00000544363 LOC102724428A0A0B4J2F2 783 aa38.28■■■■□ 3.72
CCM2-219ENST00000544363 SIK1P57059 783 aa38.28■■■■□ 3.72
CCM2-219ENST00000544363 GNAI3P08754 354 aa38.27■■■■□ 3.72
CCM2-219ENST00000544363 ALDH1L1O75891 902 aa38.25■■■■□ 3.71
CCM2-219ENST00000544363 ATP6V1AP38606 617 aa38.25■■■■□ 3.71
CCM2-219ENST00000544363 CICQ96RK0 1608 aaPredicted RBP38.24■■■■□ 3.71
CCM2-219ENST00000544363 PTF1AQ7RTS3 328 aa38.24■■■■□ 3.71
CCM2-219ENST00000544363 PLBD2Q8NHP8 589 aa38.24■■■■□ 3.71
CCM2-219ENST00000544363 USP44Q9H0E7 712 aa38.24■■■■□ 3.71
CCM2-219ENST00000544363 KRT27Q7Z3Y8 459 aa38.23■■■■□ 3.71
CCM2-219ENST00000544363 LINS1Q8NG48 757 aa38.23■■■■□ 3.71
CCM2-219ENST00000544363 SBF2Q86WG5 1849 aa38.23■■■■□ 3.71
CCM2-219ENST00000544363 BRWD3Q6RI45 1802 aa38.23■■■■□ 3.71
CCM2-219ENST00000544363 METTL22Q9BUU2 404 aaPredicted RBP38.23■■■■□ 3.71
CCM2-219ENST00000544363 BTAF1O14981 1849 aa38.22■■■■□ 3.71
CCM2-219ENST00000544363 GNAI2P04899 355 aa38.2■■■■□ 3.71
CCM2-219ENST00000544363 NEXNQ0ZGT2 675 aa38.2■■■■□ 3.71
CCM2-219ENST00000544363 TTLL7Q6ZT98 887 aa38.2■■■■□ 3.71
CCM2-219ENST00000544363 RPAP2Q8IXW5 612 aaPredicted RBP38.2■■■■□ 3.7
CCM2-219ENST00000544363 ZNF831Q5JPB2 1677 aa38.19■■■■□ 3.7
CCM2-219ENST00000544363 SIRT2Q8IXJ6 389 aa38.19■■■■□ 3.7
CCM2-219ENST00000544363 ITPK1Q13572 414 aa38.18■■■■□ 3.7
CCM2-219ENST00000544363 FAM196AQ6ZSG2 479 aa38.18■■■■□ 3.7
CCM2-219ENST00000544363 ANKRD44Q8N8A2 993 aa38.18■■■■□ 3.7
CCM2-219ENST00000544363 ARFGEF2Q9Y6D5 1785 aa38.18■■■■□ 3.7
CCM2-219ENST00000544363 UBTFL1P0CB47 393 aaPredicted RBP38.17■■■■□ 3.7
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms