RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 VIRMAQ69YN4 1812 aaKnown RBP11.79□□□□□ -0.52
CLSTN3-212ENST00000541770 NPC1L1Q9UHC9 1359 aa11.79□□□□□ -0.52
CLSTN3-212ENST00000541770 SCN11AQ9UI33 1791 aa11.78□□□□□ -0.52
CLSTN3-212ENST00000541770 ZPR1O75312 459 aa11.78□□□□□ -0.52
CLSTN3-212ENST00000541770 HSPA1AP0DMV8 641 aaKnown RBP11.78□□□□□ -0.52
CLSTN3-212ENST00000541770 HSPA1BP0DMV9 641 aaKnown RBP11.78□□□□□ -0.52
CLSTN3-212ENST00000541770 USPL1Q5W0Q7 1092 aa11.78□□□□□ -0.52
CLSTN3-212ENST00000541770 POLRMTO00411 1230 aaKnown RBP11.77□□□□□ -0.53
CLSTN3-212ENST00000541770 PRELPP51888 382 aa11.77□□□□□ -0.53
CLSTN3-212ENST00000541770 AMOTQ4VCS5 1084 aa11.77□□□□□ -0.53
CLSTN3-212ENST00000541770 DLEC1Q9Y238 1755 aa11.77□□□□□ -0.53
CLSTN3-212ENST00000541770 VEGFAP15692 232 aaPredicted RBP11.76□□□□□ -0.53
CLSTN3-212ENST00000541770 ADAMTS7Q9UKP4 1686 aa11.75□□□□□ -0.53
CLSTN3-212ENST00000541770 LMNB1P20700 586 aa11.75□□□□□ -0.53
CLSTN3-212ENST00000541770 TM4SF1P30408 202 aa11.75□□□□□ -0.53
CLSTN3-212ENST00000541770 AEBP1Q8IUX7 1158 aa11.75□□□□□ -0.53
CLSTN3-212ENST00000541770 DNAJC10Q8IXB1 793 aa11.75□□□□□ -0.53
CLSTN3-212ENST00000541770 CACNA1SQ13698 1873 aa11.74□□□□□ -0.53
CLSTN3-212ENST00000541770 GLTPD2A6NH11 291 aa11.74□□□□□ -0.53
CLSTN3-212ENST00000541770 DDX10Q13206 875 aaKnown RBP11.74□□□□□ -0.53
CLSTN3-212ENST00000541770 SULT6B1Q6IMI4 303 aa11.74□□□□□ -0.53
CLSTN3-212ENST00000541770 INTS5Q6P9B9 1019 aaKnown RBP11.74□□□□□ -0.53
CLSTN3-212ENST00000541770 NFIXQ14938 502 aa11.73□□□□□ -0.53
CLSTN3-212ENST00000541770 BICDL1Q6ZP65 573 aa11.73□□□□□ -0.53
CLSTN3-212ENST00000541770 MORC1Q86VD1 984 aa11.73□□□□□ -0.53
CLSTN3-212ENST00000541770 C2CD5Q86YS7 1000 aa11.73□□□□□ -0.53
CLSTN3-212ENST00000541770 TTLL6Q8N841 843 aa11.73□□□□□ -0.53
CLSTN3-212ENST00000541770 ZNF219Q9P2Y4 722 aaPredicted RBP11.73□□□□□ -0.53
CLSTN3-212ENST00000541770 ZC3H4Q9UPT8 1303 aaKnown RBP11.73□□□□□ -0.53
CLSTN3-212ENST00000541770 NRXN2Q9P2S2 1712 aa11.72□□□□□ -0.53
CLSTN3-212ENST00000541770 COL15A1P39059 1388 aa11.72□□□□□ -0.53
CLSTN3-212ENST00000541770 SOS1Q07889 1333 aaPredicted RBP11.72□□□□□ -0.53
CLSTN3-212ENST00000541770 SERPINB2P05120 415 aa11.72□□□□□ -0.53
CLSTN3-212ENST00000541770 SLC39A6Q13433 755 aa11.72□□□□□ -0.53
CLSTN3-212ENST00000541770 DICER1Q9UPY3 1922 aaKnown RBP11.72□□□□□ -0.53
CLSTN3-212ENST00000541770 H0YIN7 160 aa11.71□□□□□ -0.53
CLSTN3-212ENST00000541770 CC2D1BQ5T0F9 858 aaKnown RBP11.71□□□□□ -0.53
CLSTN3-212ENST00000541770 DPY19L2Q6NUT2 758 aa11.71□□□□□ -0.53
CLSTN3-212ENST00000541770 ZNF622Q969S3 477 aaKnown RBP eCLIP11.71□□□□□ -0.53
CLSTN3-212ENST00000541770 NARFQ9UHQ1 456 aa11.71□□□□□ -0.53
CLSTN3-212ENST00000541770 CANXP27824 592 aaKnown RBP11.7□□□□□ -0.54
CLSTN3-212ENST00000541770 SLC52A2Q9HAB3 445 aa11.7□□□□□ -0.54
CLSTN3-212ENST00000541770 LGR6Q9HBX8 967 aa11.7□□□□□ -0.54
CLSTN3-212ENST00000541770 MKRN1Q9UHC7 482 aaKnown RBP11.7□□□□□ -0.54
CLSTN3-212ENST00000541770 ZBTB1Q9Y2K1 713 aa11.7□□□□□ -0.54
CLSTN3-212ENST00000541770 CARMIL3Q8ND23 1372 aa11.69□□□□□ -0.54
CLSTN3-212ENST00000541770 CYP19A1P11511 503 aaPredicted RBP11.69□□□□□ -0.54
CLSTN3-212ENST00000541770 ERFEQ4G0M1 354 aa11.69□□□□□ -0.54
CLSTN3-212ENST00000541770 AKAP4Q5JQC9 854 aa11.69□□□□□ -0.54
CLSTN3-212ENST00000541770 ANKRD31Q8N7Z5 1873 aa11.69□□□□□ -0.54
CLSTN3-212ENST00000541770 FER1L6Q2WGJ9 1857 aa11.68□□□□□ -0.54
CLSTN3-212ENST00000541770 NFKBIEO00221 500 aa11.68□□□□□ -0.54
CLSTN3-212ENST00000541770 C21orf2O43822 256 aa11.68□□□□□ -0.54
CLSTN3-212ENST00000541770 CCDC24Q8N4L8 307 aa11.68□□□□□ -0.54
CLSTN3-212ENST00000541770 BCL2L12Q9HB09 334 aa11.68□□□□□ -0.54
CLSTN3-212ENST00000541770 ZNF330Q9Y3S2 320 aaPredicted RBP11.68□□□□□ -0.54
CLSTN3-212ENST00000541770 COL11A2P13942 1736 aaPredicted RBP11.67□□□□□ -0.54
CLSTN3-212ENST00000541770 POTECB2RU33 542 aa11.67□□□□□ -0.54
CLSTN3-212ENST00000541770 NPHP1O15259 732 aa11.67□□□□□ -0.54
CLSTN3-212ENST00000541770 RNMTO43148 476 aaKnown RBP11.67□□□□□ -0.54
CLSTN3-212ENST00000541770 HMOX1P09601 288 aa11.67□□□□□ -0.54
CLSTN3-212ENST00000541770 CHADLQ6NUI6 762 aa11.66□□□□□ -0.54
CLSTN3-212ENST00000541770 UBR2Q8IWV8 1755 aa11.65□□□□□ -0.54
CLSTN3-212ENST00000541770 DDNO94850 711 aaPredicted RBP11.65□□□□□ -0.54
CLSTN3-212ENST00000541770 POTEIP0CG38 1075 aa11.65□□□□□ -0.54
CLSTN3-212ENST00000541770 POTEJP0CG39 1038 aa11.65□□□□□ -0.54
CLSTN3-212ENST00000541770 IL13P35225 146 aa11.65□□□□□ -0.54
CLSTN3-212ENST00000541770 RALBP1Q15311 655 aa11.65□□□□□ -0.54
CLSTN3-212ENST00000541770 TBC1D9BQ66K14 1250 aa11.65□□□□□ -0.54
CLSTN3-212ENST00000541770 TTC5Q8N0Z6 440 aa11.65□□□□□ -0.54
CLSTN3-212ENST00000541770 CREBZFQ9NS37 354 aa11.65□□□□□ -0.54
CLSTN3-212ENST00000541770 STARD3NLO95772 234 aa11.64□□□□□ -0.55
CLSTN3-212ENST00000541770 PDE6BP35913 854 aa11.64□□□□□ -0.55
CLSTN3-212ENST00000541770 NPM2Q86SE8 214 aaKnown RBP11.64□□□□□ -0.55
CLSTN3-212ENST00000541770 AIDAQ96BJ3 306 aa11.64□□□□□ -0.55
CLSTN3-212ENST00000541770 TAOK3Q9H2K8 898 aa11.64□□□□□ -0.55
CLSTN3-212ENST00000541770 TBC1D2BQ9UPU7 963 aa11.64□□□□□ -0.55
CLSTN3-212ENST00000541770 SLX4Q8IY92 1834 aa11.64□□□□□ -0.55
CLSTN3-212ENST00000541770 SCN7AQ01118 1682 aa11.64□□□□□ -0.55
CLSTN3-212ENST00000541770 MRC1P22897 1456 aa11.63□□□□□ -0.55
CLSTN3-212ENST00000541770 A0A087WZG4 1122 aa11.63□□□□□ -0.55
CLSTN3-212ENST00000541770 FOXN1O15353 648 aa11.63□□□□□ -0.55
CLSTN3-212ENST00000541770 PPP2R1AP30153 589 aa11.63□□□□□ -0.55
CLSTN3-212ENST00000541770 CNGB1Q14028 1251 aaPredicted RBP11.63□□□□□ -0.55
CLSTN3-212ENST00000541770 ARFGEF2Q9Y6D5 1785 aa11.62□□□□□ -0.55
CLSTN3-212ENST00000541770 MTHFSDQ2M296 383 aaKnown RBP11.62□□□□□ -0.55
CLSTN3-212ENST00000541770 PRR5LQ6MZQ0 368 aa11.62□□□□□ -0.55
CLSTN3-212ENST00000541770 VSIG10Q8N0Z9 540 aa11.62□□□□□ -0.55
CLSTN3-212ENST00000541770 BRIP1Q9BX63 1249 aa11.62□□□□□ -0.55
CLSTN3-212ENST00000541770 PDZRN3Q9UPQ7 1066 aa11.62□□□□□ -0.55
CLSTN3-212ENST00000541770 CLEC11AQ9Y240 323 aa11.62□□□□□ -0.55
CLSTN3-212ENST00000541770 SCN4AP35499 1836 aa11.62□□□□□ -0.55
CLSTN3-212ENST00000541770 EIF5P55010 431 aaKnown RBP11.61□□□□□ -0.55
CLSTN3-212ENST00000541770 ST5P78524 1137 aa11.61□□□□□ -0.55
CLSTN3-212ENST00000541770 EAPPQ56P03 285 aaPredicted RBP11.61□□□□□ -0.55
CLSTN3-212ENST00000541770 CNKSR1Q969H4 720 aa11.61□□□□□ -0.55
CLSTN3-212ENST00000541770 PRKRIP1Q9H875 184 aaPredicted RBP11.61□□□□□ -0.55
CLSTN3-212ENST00000541770 CNTNAP1P78357 1384 aa11.61□□□□□ -0.55
CLSTN3-212ENST00000541770 PCNTO95613 3336 aa11.61□□□□□ -0.55
CLSTN3-212ENST00000541770 IQCA1LA6NCM1 817 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms