RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 DOT1LQ8TEK3 1739 aa22.5■■□□□ 1.19
CLIP1-215ENST00000541108 KAT6BQ8WYB5 2073 aa22.5■■□□□ 1.19
CLIP1-215ENST00000541108 A0A0G2JS52 829 aa22.5■■□□□ 1.19
CLIP1-215ENST00000541108 MYT1Q01538 1121 aa22.5■■□□□ 1.19
CLIP1-215ENST00000541108 ZNF772Q68DY9 489 aaPredicted RBP22.5■■□□□ 1.19
CLIP1-215ENST00000541108 INTS3Q68E01 1043 aaKnown RBP22.5■■□□□ 1.19
CLIP1-215ENST00000541108 DDX21Q9NR30 783 aaKnown RBP eCLIP22.5■■□□□ 1.19
CLIP1-215ENST00000541108 HYPKQ9NX55 129 aa22.5■■□□□ 1.19
CLIP1-215ENST00000541108 C5P01031 1676 aa22.5■■□□□ 1.19
CLIP1-215ENST00000541108 SYTL4Q96C24 671 aaPredicted RBP22.49■■□□□ 1.19
CLIP1-215ENST00000541108 ASAP1Q9ULH1 1129 aa22.49■■□□□ 1.19
CLIP1-215ENST00000541108 USP16Q9Y5T5 823 aa22.49■■□□□ 1.19
CLIP1-215ENST00000541108 FKBP5Q13451 457 aaPredicted RBP22.49■■□□□ 1.19
CLIP1-215ENST00000541108 TEX13AQ9BXU3 409 aaPredicted RBP22.49■■□□□ 1.19
CLIP1-215ENST00000541108 ERBB4Q15303 1308 aa22.48■■□□□ 1.19
CLIP1-215ENST00000541108 PHAXQ9H814 394 aaKnown RBP22.48■■□□□ 1.19
CLIP1-215ENST00000541108 LAMB4A4D0S4 1761 aa22.47■■□□□ 1.19
CLIP1-215ENST00000541108 PTCD1O75127 700 aaKnown RBP22.47■■□□□ 1.19
CLIP1-215ENST00000541108 PDIA6Q15084 440 aa22.47■■□□□ 1.19
CLIP1-215ENST00000541108 ZBTB7BO15156 539 aaPredicted RBP22.46■■□□□ 1.19
CLIP1-215ENST00000541108 CCT4P50991 539 aaKnown RBP22.45■■□□□ 1.18
CLIP1-215ENST00000541108 SEPT12Q8IYM1 358 aa22.45■■□□□ 1.18
CLIP1-215ENST00000541108 ZBTB40Q9NUA8 1239 aa22.45■■□□□ 1.18
CLIP1-215ENST00000541108 ACSBG1Q96GR2 724 aa22.43■■□□□ 1.18
CLIP1-215ENST00000541108 PXDNLA1KZ92 1463 aa22.43■■□□□ 1.18
CLIP1-215ENST00000541108 PROSER3Q2NL68 480 aa22.42■■□□□ 1.18
CLIP1-215ENST00000541108 F6X3S4 739 aa22.42■■□□□ 1.18
CLIP1-215ENST00000541108 ANXA1P04083 346 aa22.42■■□□□ 1.18
CLIP1-215ENST00000541108 DDX58O95786 925 aaKnown RBP22.41■■□□□ 1.18
CLIP1-215ENST00000541108 RBM6P78332 1123 aaKnown RBP22.41■■□□□ 1.18
CLIP1-215ENST00000541108 LRP10Q7Z4F1 713 aa22.41■■□□□ 1.18
CLIP1-215ENST00000541108 SMARCC1Q92922 1105 aaPredicted RBP22.41■■□□□ 1.18
CLIP1-215ENST00000541108 SLC4A10Q6U841 1118 aa22.4■■□□□ 1.18
CLIP1-215ENST00000541108 KSR2Q6VAB6 950 aa22.4■■□□□ 1.18
CLIP1-215ENST00000541108 RBM42Q9BTD8 480 aaKnown RBP22.4■■□□□ 1.18
CLIP1-215ENST00000541108 PI4KAP2A4QPH2 592 aa22.39■■□□□ 1.18
CLIP1-215ENST00000541108 STARD3NLO95772 234 aa22.39■■□□□ 1.18
CLIP1-215ENST00000541108 PI4KAP1Q8N8J0 262 aa22.39■■□□□ 1.18
CLIP1-215ENST00000541108 KCNQ2O43526 872 aa22.39■■□□□ 1.17
CLIP1-215ENST00000541108 DNAAF4Q8WXU2 420 aa22.39■■□□□ 1.17
CLIP1-215ENST00000541108 MYL6BP14649 208 aa22.38■■□□□ 1.17
CLIP1-215ENST00000541108 PCDHB15Q9Y5E8 787 aa22.38■■□□□ 1.17
CLIP1-215ENST00000541108 N4BP2Q86UW6 1770 aaPredicted RBP22.37■■□□□ 1.17
CLIP1-215ENST00000541108 CENPQQ7L2Z9 268 aaPredicted RBP22.37■■□□□ 1.17
CLIP1-215ENST00000541108 SLC4A9Q96Q91 983 aa22.37■■□□□ 1.17
CLIP1-215ENST00000541108 ADCY9O60503 1353 aa22.37■■□□□ 1.17
CLIP1-215ENST00000541108 NBPF26B4DH59 902 aa22.36■■□□□ 1.17
CLIP1-215ENST00000541108 NBPF14Q5TI25 921 aa22.36■■□□□ 1.17
CLIP1-215ENST00000541108 NBPF10Q6P3W6 841 aaKnown RBP22.36■■□□□ 1.17
CLIP1-215ENST00000541108 COPS6Q7L5N1 327 aa22.36■■□□□ 1.17
CLIP1-215ENST00000541108 DNAJC10Q8IXB1 793 aa22.36■■□□□ 1.17
CLIP1-215ENST00000541108 NBPF15Q8N660 670 aa22.36■■□□□ 1.17
CLIP1-215ENST00000541108 KDM2BQ8NHM5 1336 aa22.36■■□□□ 1.17
CLIP1-215ENST00000541108 ATP10DQ9P241 1426 aa22.36■■□□□ 1.17
CLIP1-215ENST00000541108 A1BGP04217 495 aa22.35■■□□□ 1.17
CLIP1-215ENST00000541108 XAGE3Q8WTP9 111 aa22.35■■□□□ 1.17
CLIP1-215ENST00000541108 NHSQ6T4R5 1651 aa22.35■■□□□ 1.17
CLIP1-215ENST00000541108 PALLDQ8WX93 1383 aa22.35■■□□□ 1.17
CLIP1-215ENST00000541108 LOC102724428A0A0B4J2F2 783 aa22.34■■□□□ 1.17
CLIP1-215ENST00000541108 SIK1P57059 783 aa22.34■■□□□ 1.17
CLIP1-215ENST00000541108 AIMP1Q12904 312 aaKnown RBP22.34■■□□□ 1.17
CLIP1-215ENST00000541108 BEND3Q5T5X7 828 aa22.34■■□□□ 1.17
CLIP1-215ENST00000541108 ANKRD13DQ6ZTN6 518 aa22.34■■□□□ 1.17
CLIP1-215ENST00000541108 SRCIN1Q9C0H9 1055 aa22.34■■□□□ 1.17
CLIP1-215ENST00000541108 RWDD1Q9H446 243 aaPredicted RBP22.34■■□□□ 1.17
CLIP1-215ENST00000541108 MAP3K2Q9Y2U5 619 aa22.34■■□□□ 1.17
CLIP1-215ENST00000541108 CICQ96RK0 1608 aaPredicted RBP22.34■■□□□ 1.17
CLIP1-215ENST00000541108 CYP19A1P11511 503 aaPredicted RBP22.33■■□□□ 1.17
CLIP1-215ENST00000541108 KRT27Q7Z3Y8 459 aa22.33■■□□□ 1.17
CLIP1-215ENST00000541108 PELP1Q8IZL8 1130 aaKnown RBP22.33■■□□□ 1.17
CLIP1-215ENST00000541108 ZNF831Q5JPB2 1677 aa22.33■■□□□ 1.17
CLIP1-215ENST00000541108 FAM196AQ6ZSG2 479 aa22.33■■□□□ 1.16
CLIP1-215ENST00000541108 IBTKQ9P2D0 1353 aaPredicted RBP22.32■■□□□ 1.16
CLIP1-215ENST00000541108 HDAC1Q13547 482 aaPredicted RBP22.32■■□□□ 1.16
CLIP1-215ENST00000541108 RIC3Q7Z5B4 369 aa22.32■■□□□ 1.16
CLIP1-215ENST00000541108 SBF2Q86WG5 1849 aa22.31■■□□□ 1.16
CLIP1-215ENST00000541108 ALDH1L1O75891 902 aa22.31■■□□□ 1.16
CLIP1-215ENST00000541108 IGHDP01880 384 aa22.31■■□□□ 1.16
CLIP1-215ENST00000541108 GNAI3P08754 354 aa22.31■■□□□ 1.16
CLIP1-215ENST00000541108 ATP6V1AP38606 617 aa22.31■■□□□ 1.16
CLIP1-215ENST00000541108 PIP4K2AP48426 406 aaPredicted RBP22.31■■□□□ 1.16
CLIP1-215ENST00000541108 FAM182BQ5T319 152 aa22.31■■□□□ 1.16
CLIP1-215ENST00000541108 PLBD2Q8NHP8 589 aa22.31■■□□□ 1.16
CLIP1-215ENST00000541108 TJP1Q07157 1748 aa22.31■■□□□ 1.16
CLIP1-215ENST00000541108 RXRBP28702 533 aa22.3■■□□□ 1.16
CLIP1-215ENST00000541108 LINS1Q8NG48 757 aa22.3■■□□□ 1.16
CLIP1-215ENST00000541108 MEIS3Q99687 375 aa22.3■■□□□ 1.16
CLIP1-215ENST00000541108 BRWD3Q6RI45 1802 aa22.29■■□□□ 1.16
CLIP1-215ENST00000541108 NEXNQ0ZGT2 675 aa22.29■■□□□ 1.16
CLIP1-215ENST00000541108 METTL22Q9BUU2 404 aaPredicted RBP22.29■■□□□ 1.16
CLIP1-215ENST00000541108 BCL11BQ9C0K0 894 aaPredicted RBP22.29■■□□□ 1.16
CLIP1-215ENST00000541108 USP44Q9H0E7 712 aa22.29■■□□□ 1.16
CLIP1-215ENST00000541108 BTAF1O14981 1849 aa22.28■■□□□ 1.16
CLIP1-215ENST00000541108 RPAP2Q8IXW5 612 aaPredicted RBP22.28■■□□□ 1.16
CLIP1-215ENST00000541108 IL6STP40189 918 aaPredicted RBP22.26■■□□□ 1.15
CLIP1-215ENST00000541108 PTF1AQ7RTS3 328 aa22.26■■□□□ 1.15
CLIP1-215ENST00000541108 RGS17Q9UGC6 210 aaPredicted RBP22.26■■□□□ 1.15
CLIP1-215ENST00000541108 GNAI2P04899 355 aa22.26■■□□□ 1.15
CLIP1-215ENST00000541108 HDAC5Q9UQL6 1122 aa22.26■■□□□ 1.15
CLIP1-215ENST00000541108 ITPK1Q13572 414 aa22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms