RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 PWP2Q15269 919 aaKnown RBP11.44□□□□□ -0.58
CTNNA1-243ENST00000540387 SYCP1Q15431 976 aa11.44□□□□□ -0.58
CTNNA1-243ENST00000540387 RARSP54136 660 aaKnown RBP11.43□□□□□ -0.58
CTNNA1-243ENST00000540387 SOS2Q07890 1332 aaPredicted RBP11.43□□□□□ -0.58
CTNNA1-243ENST00000540387 PIK3C2AO00443 1686 aa11.43□□□□□ -0.58
CTNNA1-243ENST00000540387 MAP3K19Q56UN5 1328 aa11.43□□□□□ -0.58
CTNNA1-243ENST00000540387 KIF1AQ12756 1690 aa11.43□□□□□ -0.58
CTNNA1-243ENST00000540387 TOM1O60784 492 aa11.43□□□□□ -0.58
CTNNA1-243ENST00000540387 GCP02774 474 aa11.43□□□□□ -0.58
CTNNA1-243ENST00000540387 HNRNPH2P55795 449 aaKnown RBP11.43□□□□□ -0.58
CTNNA1-243ENST00000540387 PIP4K2BP78356 416 aa11.43□□□□□ -0.58
CTNNA1-243ENST00000540387 SPATA31A3Q5VYP0 1347 aa11.43□□□□□ -0.58
CTNNA1-243ENST00000540387 PNPLA6Q8IY17 1366 aa11.43□□□□□ -0.58
CTNNA1-243ENST00000540387 CNPY4Q8N129 248 aa11.43□□□□□ -0.58
CTNNA1-243ENST00000540387 KIAA1524Q8TCG1 905 aa11.43□□□□□ -0.58
CTNNA1-243ENST00000540387 CABLES1Q8TDN4 633 aa11.43□□□□□ -0.58
CTNNA1-243ENST00000540387 USP25Q9UHP3 1055 aa11.43□□□□□ -0.58
CTNNA1-243ENST00000540387 ANKRD26Q9UPS8 1709 aa11.43□□□□□ -0.58
CTNNA1-243ENST00000540387 SBNO1A3KN83 1393 aa11.42□□□□□ -0.58
CTNNA1-243ENST00000540387 RAD51AP2Q09MP3 1159 aa11.42□□□□□ -0.58
CTNNA1-243ENST00000540387 HSP90AB2PQ58FF8 381 aa11.42□□□□□ -0.58
CTNNA1-243ENST00000540387 RSPH14Q9UHP6 348 aa11.42□□□□□ -0.58
CTNNA1-243ENST00000540387 PXDNQ92626 1479 aa11.42□□□□□ -0.58
CTNNA1-243ENST00000540387 DIAPH1O60610 1272 aaKnown RBP11.42□□□□□ -0.58
CTNNA1-243ENST00000540387 AXDND1Q5T1B0 1012 aaPredicted RBP11.42□□□□□ -0.58
CTNNA1-243ENST00000540387 CHAMP1Q96JM3 812 aa11.42□□□□□ -0.58
CTNNA1-243ENST00000540387 UBAP1LF5GYI3 381 aa11.41□□□□□ -0.58
CTNNA1-243ENST00000540387 U2SURPO15042 1029 aaKnown RBP11.41□□□□□ -0.58
CTNNA1-243ENST00000540387 ADCY5O95622 1261 aa11.41□□□□□ -0.58
CTNNA1-243ENST00000540387 PRR29P0C7W0 189 aa11.41□□□□□ -0.58
CTNNA1-243ENST00000540387 FAM193AP78312 1265 aa11.41□□□□□ -0.58
CTNNA1-243ENST00000540387 MBD3O95983 291 aa11.41□□□□□ -0.58
CTNNA1-243ENST00000540387 NOP2P46087 812 aaKnown RBP11.41□□□□□ -0.58
CTNNA1-243ENST00000540387 AMPHP49418 695 aa11.41□□□□□ -0.58
CTNNA1-243ENST00000540387 KCNH5Q8NCM2 988 aa11.41□□□□□ -0.58
CTNNA1-243ENST00000540387 BCL2L13Q9BXK5 485 aa11.41□□□□□ -0.58
CTNNA1-243ENST00000540387 PYCARDQ9ULZ3 195 aa11.41□□□□□ -0.58
CTNNA1-243ENST00000540387 U2AF1L5P0DN76 240 aaPredicted RBP11.4□□□□□ -0.58
CTNNA1-243ENST00000540387 U2AF1Q01081 240 aaKnown RBP eCLIP11.4□□□□□ -0.58
CTNNA1-243ENST00000540387 MVPQ14764 893 aaKnown RBP11.4□□□□□ -0.58
CTNNA1-243ENST00000540387 NAA30Q147X3 362 aaPredicted RBP11.4□□□□□ -0.58
CTNNA1-243ENST00000540387 UVSSAQ2YD98 709 aa11.4□□□□□ -0.58
CTNNA1-243ENST00000540387 CERKQ8TCT0 537 aa11.4□□□□□ -0.58
CTNNA1-243ENST00000540387 CREBRFQ8IUR6 639 aa11.4□□□□□ -0.59
CTNNA1-243ENST00000540387 ZNF622Q969S3 477 aaKnown RBP eCLIP11.4□□□□□ -0.592e-10■□□□□ 9.9
CTNNA1-243ENST00000540387 TNS3Q68CZ2 1445 aa11.4□□□□□ -0.59
CTNNA1-243ENST00000540387 MAP2P11137 1827 aaKnown RBP11.39□□□□□ -0.59
CTNNA1-243ENST00000540387 CYP2C19P33261 490 aa11.39□□□□□ -0.59
CTNNA1-243ENST00000540387 IL13P35225 146 aa11.39□□□□□ -0.59
CTNNA1-243ENST00000540387 HDAC1Q13547 482 aaPredicted RBP11.39□□□□□ -0.59
CTNNA1-243ENST00000540387 WWC1Q8IX03 1113 aa11.39□□□□□ -0.59
CTNNA1-243ENST00000540387 FAM53CQ9NYF3 392 aa11.39□□□□□ -0.59
CTNNA1-243ENST00000540387 ZDHHC9Q9Y397 364 aa11.39□□□□□ -0.59
CTNNA1-243ENST00000540387 TRPM3Q9HCF6 1732 aaPredicted RBP11.39□□□□□ -0.59
CTNNA1-243ENST00000540387 GTF2A1P52655 376 aaPredicted RBP11.39□□□□□ -0.59
CTNNA1-243ENST00000540387 ZC3H6P61129 1189 aaKnown RBP11.39□□□□□ -0.59
CTNNA1-243ENST00000540387 DHX16O60231 1041 aaKnown RBP11.38□□□□□ -0.59
CTNNA1-243ENST00000540387 KCNF1Q9H3M0 494 aa11.38□□□□□ -0.59
CTNNA1-243ENST00000540387 ST7Q9NRC1 585 aa11.38□□□□□ -0.59
CTNNA1-243ENST00000540387 COL3A1P02461 1466 aaPredicted RBP11.38□□□□□ -0.59
CTNNA1-243ENST00000540387 HOXC9P31274 260 aa11.38□□□□□ -0.59
CTNNA1-243ENST00000540387 EIF4A2Q14240 407 aaKnown RBP11.38□□□□□ -0.59
CTNNA1-243ENST00000540387 ARHGEF25Q86VW2 580 aa11.38□□□□□ -0.59
CTNNA1-243ENST00000540387 FAM184AQ8NB25 1140 aa11.38□□□□□ -0.59
CTNNA1-243ENST00000540387 TMX1Q9H3N1 280 aa11.38□□□□□ -0.59
CTNNA1-243ENST00000540387 RASSF4Q9H2L5 321 aa11.37□□□□□ -0.59
CTNNA1-243ENST00000540387 LRRC59Q96AG4 307 aaKnown RBP11.37□□□□□ -0.59
CTNNA1-243ENST00000540387 CWC22Q9HCG8 908 aaKnown RBP11.37□□□□□ -0.59
CTNNA1-243ENST00000540387 ARHGEF10O15013 1369 aa11.37□□□□□ -0.59
CTNNA1-243ENST00000540387 CDK12Q9NYV4 1490 aaPredicted RBP11.36□□□□□ -0.59
CTNNA1-243ENST00000540387 FLT4P35916 1363 aa11.36□□□□□ -0.59
CTNNA1-243ENST00000540387 SMTNL1A8MU46 457 aa11.36□□□□□ -0.59
CTNNA1-243ENST00000540387 HMOX1P09601 288 aa11.36□□□□□ -0.59
CTNNA1-243ENST00000540387 LTV1Q96GA3 475 aaPredicted RBP11.36□□□□□ -0.59
CTNNA1-243ENST00000540387 MARF1Q9Y4F3 1742 aaKnown RBP11.36□□□□□ -0.59
CTNNA1-243ENST00000540387 BMP2KLQ5H9B9 411 aa11.36□□□□□ -0.59
CTNNA1-243ENST00000540387 ZGPATQ8N5A5 531 aaKnown RBP11.36□□□□□ -0.59
CTNNA1-243ENST00000540387 IP6K1Q92551 441 aa11.36□□□□□ -0.59
CTNNA1-243ENST00000540387 MYCBPQ99417 103 aaPredicted RBP11.36□□□□□ -0.59
CTNNA1-243ENST00000540387 ROBO1Q9Y6N7 1651 aa11.36□□□□□ -0.59
CTNNA1-243ENST00000540387 KMT5BQ4FZB7 885 aa11.35□□□□□ -0.59
CTNNA1-243ENST00000540387 TBC1D9Q6ZT07 1266 aa11.35□□□□□ -0.59
CTNNA1-243ENST00000540387 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.35□□□□□ -0.59
CTNNA1-243ENST00000540387 ZNF397Q8NF99 534 aaPredicted RBP11.35□□□□□ -0.59
CTNNA1-243ENST00000540387 SYAP1Q96A49 352 aaPredicted RBP11.35□□□□□ -0.59
CTNNA1-243ENST00000540387 LNPKQ9C0E8 428 aa11.35□□□□□ -0.59
CTNNA1-243ENST00000540387 ALS2Q96Q42 1657 aa11.35□□□□□ -0.59
CTNNA1-243ENST00000540387 RABEP1Q15276 862 aa11.35□□□□□ -0.59
CTNNA1-243ENST00000540387 EP400NLQ6ZTU2 488 aa11.35□□□□□ -0.59
CTNNA1-243ENST00000540387 NOL10Q9BSC4 688 aaKnown RBP11.35□□□□□ -0.59
CTNNA1-243ENST00000540387 AXIN2Q9Y2T1 843 aa11.35□□□□□ -0.59
CTNNA1-243ENST00000540387 MED1Q15648 1581 aaPredicted RBP11.35□□□□□ -0.59
CTNNA1-243ENST00000540387 NFAT5O94916 1531 aa11.35□□□□□ -0.59
CTNNA1-243ENST00000540387 REC8O95072 547 aa11.34□□□□□ -0.59
CTNNA1-243ENST00000540387 LMOD3Q0VAK6 560 aa11.34□□□□□ -0.59
CTNNA1-243ENST00000540387 ICE2Q659A1 982 aa11.34□□□□□ -0.59
CTNNA1-243ENST00000540387 NCAPGQ9BPX3 1015 aa11.34□□□□□ -0.59
CTNNA1-243ENST00000540387 SLIT3O75094 1523 aa11.34□□□□□ -0.59
CTNNA1-243ENST00000540387 PEAK1Q9H792 1746 aa11.34□□□□□ -0.59
CTNNA1-243ENST00000540387 PHF14O94880 888 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms