RNA–Protein interactions for RNA: ENST00000538654.5

SNHG1-209, Transcript of small nucleolar RNA host gene 1, human

TSL 2

Gene SNHG1, Length 2,768 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-209	ENST00000538654	PPME1	Q9Y570	386 aa		10.81	□□□□□ -0.68
SNHG1-209	ENST00000538654	CPSF1	Q10570	1443 aa	Known RBP	10.81	□□□□□ -0.68
SNHG1-209	ENST00000538654	HCLS1	P14317	486 aa	Predicted RBP	10.81	□□□□□ -0.68
SNHG1-209	ENST00000538654	VTI1A	Q96AJ9	217 aa		10.81	□□□□□ -0.68
SNHG1-209	ENST00000538654	SPATA32	Q96LK8	384 aa		10.81	□□□□□ -0.68
SNHG1-209	ENST00000538654	ARHGEF40	Q8TER5	1519 aa		10.8	□□□□□ -0.68
SNHG1-209	ENST00000538654	ESYT1	Q9BSJ8	1104 aa		10.8	□□□□□ -0.68
SNHG1-209	ENST00000538654	KIAA1522	Q9P206	1035 aa	Predicted RBP	10.8	□□□□□ -0.68
SNHG1-209	ENST00000538654	ANKRD62	A6NC57	917 aa		10.8	□□□□□ -0.68
SNHG1-209	ENST00000538654	ELL2	O00472	640 aa	Predicted RBP	10.8	□□□□□ -0.68
SNHG1-209	ENST00000538654	ZNF771	Q7L3S4	317 aa	Predicted RBP	10.8	□□□□□ -0.68
SNHG1-209	ENST00000538654	TCHH	Q07283	1943 aa		10.79	□□□□□ -0.68
SNHG1-209	ENST00000538654	PDE1A	P54750	535 aa		10.79	□□□□□ -0.68
SNHG1-209	ENST00000538654	C17orf53	Q8N3J3	647 aa	Predicted RBP	10.79	□□□□□ -0.68
SNHG1-209	ENST00000538654	CGN	Q9P2M7	1197 aa	Known RBP	10.79	□□□□□ -0.68
SNHG1-209	ENST00000538654	PTPRC	P08575	1304 aa		10.79	□□□□□ -0.68
SNHG1-209	ENST00000538654	RPAP1	Q9BWH6	1393 aa	Predicted RBP	10.79	□□□□□ -0.68
SNHG1-209	ENST00000538654	CHD1	O14646	1710 aa		10.79	□□□□□ -0.68
SNHG1-209	ENST00000538654	U2AF2	P26368	475 aa	Known RBP eCLIP	10.79	□□□□□ -0.68	1e-8	■■■□□ 19
SNHG1-209	ENST00000538654	PROM2	Q8N271	834 aa		10.79	□□□□□ -0.68
SNHG1-209	ENST00000538654	C8orf58	Q8NAV2	365 aa		10.79	□□□□□ -0.68
SNHG1-209	ENST00000538654	MICAL1	Q8TDZ2	1067 aa		10.79	□□□□□ -0.68
SNHG1-209	ENST00000538654	GIMAP6	Q6P9H5	292 aa		10.78	□□□□□ -0.68
SNHG1-209	ENST00000538654	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	10.78	□□□□□ -0.68
SNHG1-209	ENST00000538654	MPND	Q8N594	471 aa		10.78	□□□□□ -0.68
SNHG1-209	ENST00000538654	CD163L1	Q9NR16	1453 aa		10.78	□□□□□ -0.68
SNHG1-209	ENST00000538654	DLG5	Q8TDM6	1919 aa		10.78	□□□□□ -0.68
SNHG1-209	ENST00000538654	SMTNL1	A8MU46	457 aa		10.78	□□□□□ -0.68
SNHG1-209	ENST00000538654	TUBGCP6	Q96RT7	1819 aa		10.78	□□□□□ -0.68
SNHG1-209	ENST00000538654	SRCIN1	Q9C0H9	1055 aa		10.78	□□□□□ -0.68
SNHG1-209	ENST00000538654	GDPD2	Q9HCC8	539 aa		10.78	□□□□□ -0.68
SNHG1-209	ENST00000538654	RIMS2	Q9UQ26	1411 aa		10.78	□□□□□ -0.68
SNHG1-209	ENST00000538654	PIK3C2B	O00750	1634 aa		10.78	□□□□□ -0.68
SNHG1-209	ENST00000538654	NPAT	Q14207	1427 aa		10.77	□□□□□ -0.68
SNHG1-209	ENST00000538654	FAM177B	A6PVY3	158 aa		10.77	□□□□□ -0.68
SNHG1-209	ENST00000538654	POLA2	Q14181	598 aa		10.77	□□□□□ -0.68
SNHG1-209	ENST00000538654	PHACTR3	Q96KR7	559 aa		10.77	□□□□□ -0.68
SNHG1-209	ENST00000538654	THUMPD2	Q9BTF0	503 aa	Known RBP	10.77	□□□□□ -0.68
SNHG1-209	ENST00000538654	IGSF5	Q9NSI5	407 aa		10.77	□□□□□ -0.68
SNHG1-209	ENST00000538654	RNF216	Q9NWF9	866 aa	Predicted RBP	10.77	□□□□□ -0.68
SNHG1-209	ENST00000538654	ABCC3	O15438	1527 aa		10.77	□□□□□ -0.69
SNHG1-209	ENST00000538654	CCDC66	A2RUB6	948 aa		10.77	□□□□□ -0.69
SNHG1-209	ENST00000538654	PATL2	C9JE40	543 aa	Known RBP	10.77	□□□□□ -0.69
SNHG1-209	ENST00000538654	RAB11FIP3	O75154	756 aa		10.77	□□□□□ -0.69
SNHG1-209	ENST00000538654	ZSCAN22	P10073	491 aa	Predicted RBP	10.77	□□□□□ -0.69
SNHG1-209	ENST00000538654	FUCA2	Q9BTY2	467 aa		10.77	□□□□□ -0.69
SNHG1-209	ENST00000538654	PAXBP1	Q9Y5B6	917 aa		10.77	□□□□□ -0.69
SNHG1-209	ENST00000538654	NEXMIF	Q5QGS0	1516 aa		10.77	□□□□□ -0.69
SNHG1-209	ENST00000538654	CCDC192	P0DO97	292 aa		10.77	□□□□□ -0.69
SNHG1-209	ENST00000538654	FAM193A	P78312	1265 aa		10.77	□□□□□ -0.69
SNHG1-209	ENST00000538654	DNAJC2	Q99543	621 aa	Known RBP	10.77	□□□□□ -0.69
SNHG1-209	ENST00000538654	KCNF1	Q9H3M0	494 aa		10.77	□□□□□ -0.69
SNHG1-209	ENST00000538654	ANO2	Q9NQ90	1003 aa		10.77	□□□□□ -0.69
SNHG1-209	ENST00000538654	PYCARD	Q9ULZ3	195 aa		10.77	□□□□□ -0.69
SNHG1-209	ENST00000538654	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	10.77	□□□□□ -0.69
SNHG1-209	ENST00000538654	MSH6	P52701	1360 aa		10.76	□□□□□ -0.69
SNHG1-209	ENST00000538654	MAFG	O15525	162 aa		10.76	□□□□□ -0.69
SNHG1-209	ENST00000538654	MAP2	P11137	1827 aa	Known RBP	10.76	□□□□□ -0.69
SNHG1-209	ENST00000538654	KIDINS220	Q9ULH0	1771 aa		10.76	□□□□□ -0.69
SNHG1-209	ENST00000538654	NCBP1	Q09161	790 aa	Known RBP	10.76	□□□□□ -0.69
SNHG1-209	ENST00000538654	CCDC97	Q96F63	343 aa	Predicted RBP	10.76	□□□□□ -0.69
SNHG1-209	ENST00000538654	POLK	Q9UBT6	870 aa		10.76	□□□□□ -0.69
SNHG1-209	ENST00000538654	CTNNA3	Q9UI47	895 aa		10.76	□□□□□ -0.69
SNHG1-209	ENST00000538654	CNPY2	Q9Y2B0	182 aa		10.76	□□□□□ -0.69
SNHG1-209	ENST00000538654	CFAP65	Q6ZU64	1925 aa	Known RBP	10.75	□□□□□ -0.69
SNHG1-209	ENST00000538654	HECW2	Q9P2P5	1572 aa		10.75	□□□□□ -0.69
SNHG1-209	ENST00000538654	HSP90AB4P	Q58FF6	505 aa		10.75	□□□□□ -0.69
SNHG1-209	ENST00000538654	DDX41	Q9UJV9	622 aa	Known RBP	10.75	□□□□□ -0.69
SNHG1-209	ENST00000538654	SUGT1	Q9Y2Z0	365 aa		10.75	□□□□□ -0.69
SNHG1-209	ENST00000538654	ARIH1	Q9Y4X5	557 aa	Predicted RBP	10.75	□□□□□ -0.69
SNHG1-209	ENST00000538654	CDK12	Q9NYV4	1490 aa	Predicted RBP	10.75	□□□□□ -0.69
SNHG1-209	ENST00000538654	HMOX1	P09601	288 aa		10.75	□□□□□ -0.69
SNHG1-209	ENST00000538654	CHML	P26374	656 aa		10.75	□□□□□ -0.69
SNHG1-209	ENST00000538654	GTF2E1	P29083	439 aa	Predicted RBP	10.75	□□□□□ -0.69
SNHG1-209	ENST00000538654	PALD1	Q9ULE6	856 aa		10.75	□□□□□ -0.69
SNHG1-209	ENST00000538654	MORC2	Q9Y6X9	1032 aa	Predicted RBP	10.75	□□□□□ -0.69
SNHG1-209	ENST00000538654	KIAA0232	Q92628	1395 aa		10.74	□□□□□ -0.69
SNHG1-209	ENST00000538654	TPD52L2	O43399	206 aa	Known RBP	10.74	□□□□□ -0.69
SNHG1-209	ENST00000538654	STX6	O43752	255 aa		10.74	□□□□□ -0.69
SNHG1-209	ENST00000538654	GRIPAP1	Q4V328	841 aa		10.74	□□□□□ -0.69
SNHG1-209	ENST00000538654	CREBRF	Q8IUR6	639 aa		10.74	□□□□□ -0.69
SNHG1-209	ENST00000538654	ERCC6L2	Q5T890	1561 aa		10.74	□□□□□ -0.69
SNHG1-209	ENST00000538654	PTPRM	P28827	1452 aa		10.74	□□□□□ -0.69
SNHG1-209	ENST00000538654	AOX1	Q06278	1338 aa		10.73	□□□□□ -0.69
SNHG1-209	ENST00000538654	PLEKHG3	A1L390	1219 aa		10.73	□□□□□ -0.69
SNHG1-209	ENST00000538654	F13A1	P00488	732 aa		10.73	□□□□□ -0.69
SNHG1-209	ENST00000538654	SAFB2	Q14151	953 aa	Known RBP eCLIP	10.73	□□□□□ -0.69
SNHG1-209	ENST00000538654	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	10.73	□□□□□ -0.69
SNHG1-209	ENST00000538654	ANKRD13A	Q8IZ07	590 aa		10.73	□□□□□ -0.69
SNHG1-209	ENST00000538654	CCDC112	Q8NEF3	446 aa		10.73	□□□□□ -0.69
SNHG1-209	ENST00000538654	FAM200A	Q8TCP9	573 aa		10.73	□□□□□ -0.69
SNHG1-209	ENST00000538654	MEIS3	Q99687	375 aa		10.73	□□□□□ -0.69
SNHG1-209	ENST00000538654	SALL3	Q9BXA9	1300 aa		10.73	□□□□□ -0.69
SNHG1-209	ENST00000538654	YTHDC2	Q9H6S0	1430 aa	Known RBP	10.73	□□□□□ -0.69
SNHG1-209	ENST00000538654	HSPA4	P34932	840 aa		10.73	□□□□□ -0.69
SNHG1-209	ENST00000538654	IL13	P35225	146 aa		10.73	□□□□□ -0.69
SNHG1-209	ENST00000538654	CCT4	P50991	539 aa	Known RBP	10.73	□□□□□ -0.69
SNHG1-209	ENST00000538654	SET	Q01105	290 aa	Predicted RBP	10.73	□□□□□ -0.69
SNHG1-209	ENST00000538654	SPC24	Q8NBT2	197 aa		10.73	□□□□□ -0.69
SNHG1-209	ENST00000538654	LRRCC1	Q9C099	1032 aa		10.73	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms