RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 LRRN4Q8WUT4 740 aa8.38□□□□□ -1.07
USP28-207ENST00000538475 CLUAP1Q96AJ1 413 aa8.38□□□□□ -1.07
USP28-207ENST00000538475 WASF2Q9Y6W5 498 aa8.38□□□□□ -1.07
USP28-207ENST00000538475 ZNF500O60304 480 aaPredicted RBP8.37□□□□□ -1.07
USP28-207ENST00000538475 RFC5P40937 340 aa8.37□□□□□ -1.07
USP28-207ENST00000538475 RGS3P49796 1198 aa8.37□□□□□ -1.07
USP28-207ENST00000538475 WDR43Q15061 677 aaKnown RBP eCLIP8.37□□□□□ -1.07
USP28-207ENST00000538475 NBPF14Q5TI25 921 aa8.37□□□□□ -1.07
USP28-207ENST00000538475 KIAA1211Q6ZU35 1233 aa8.37□□□□□ -1.07
USP28-207ENST00000538475 CDK13Q14004 1512 aaKnown RBP8.37□□□□□ -1.07
USP28-207ENST00000538475 SYNJ2O15056 1496 aa8.37□□□□□ -1.07
USP28-207ENST00000538475 TROQ12816 1431 aaPredicted RBP8.37□□□□□ -1.07
USP28-207ENST00000538475 ERBINQ96RT1 1412 aa8.37□□□□□ -1.07
USP28-207ENST00000538475 UNC13BO14795 1591 aa8.36□□□□□ -1.07
USP28-207ENST00000538475 ASXL1Q8IXJ9 1541 aa8.36□□□□□ -1.07
USP28-207ENST00000538475 ST8SIA5O15466 376 aa8.36□□□□□ -1.07
USP28-207ENST00000538475 SIAH2O43255 324 aa8.36□□□□□ -1.07
USP28-207ENST00000538475 MSNP26038 577 aaKnown RBP8.36□□□□□ -1.07
USP28-207ENST00000538475 DDIT3P35638 169 aa8.36□□□□□ -1.07
USP28-207ENST00000538475 C20orf194Q5TEA3 1177 aa8.36□□□□□ -1.07
USP28-207ENST00000538475 TAF3Q5VWG9 929 aa8.36□□□□□ -1.07
USP28-207ENST00000538475 BPHLQ86WA6 291 aaPredicted RBP8.36□□□□□ -1.07
USP28-207ENST00000538475 FAM174AQ8TBP5 190 aa8.36□□□□□ -1.07
USP28-207ENST00000538475 FOXJ1Q92949 421 aa8.36□□□□□ -1.07
USP28-207ENST00000538475 POLR3GLQ9BT43 218 aa8.36□□□□□ -1.07
USP28-207ENST00000538475 ATP10AO60312 1499 aa8.36□□□□□ -1.07
USP28-207ENST00000538475 PLEKHH1Q9ULM0 1364 aa8.35□□□□□ -1.07
USP28-207ENST00000538475 GOLGA6L22H0YM25 854 aa8.35□□□□□ -1.07
USP28-207ENST00000538475 AXIN1O15169 862 aa8.35□□□□□ -1.07
USP28-207ENST00000538475 AVPP01185 164 aa8.35□□□□□ -1.07
USP28-207ENST00000538475 TNNT2P45379 298 aaPredicted RBP8.35□□□□□ -1.07
USP28-207ENST00000538475 TMF1P82094 1093 aa8.35□□□□□ -1.07
USP28-207ENST00000538475 HSCBQ8IWL3 235 aa8.35□□□□□ -1.07
USP28-207ENST00000538475 SMC5Q8IY18 1101 aa8.35□□□□□ -1.07
USP28-207ENST00000538475 SLKQ9H2G2 1235 aaPredicted RBP8.35□□□□□ -1.07
USP28-207ENST00000538475 RWDD1Q9H446 243 aaPredicted RBP8.35□□□□□ -1.07
USP28-207ENST00000538475 AAASQ9NRG9 546 aa8.35□□□□□ -1.07
USP28-207ENST00000538475 KIAA0556O60303 1618 aa8.35□□□□□ -1.07
USP28-207ENST00000538475 ADAMTS12P58397 1594 aa8.35□□□□□ -1.07
USP28-207ENST00000538475 KANK1Q14678 1352 aa8.35□□□□□ -1.07
USP28-207ENST00000538475 KIF16BQ96L93 1317 aa8.34□□□□□ -1.07
USP28-207ENST00000538475 KDM5AP29375 1690 aaKnown RBP8.34□□□□□ -1.07
USP28-207ENST00000538475 TARBP1Q13395 1621 aaKnown RBP8.34□□□□□ -1.07
USP28-207ENST00000538475 USP17L8P0C7I0 530 aa8.34□□□□□ -1.07
USP28-207ENST00000538475 ARID5BQ14865 1188 aa8.34□□□□□ -1.07
USP28-207ENST00000538475 NR6A1Q15406 480 aa8.34□□□□□ -1.07
USP28-207ENST00000538475 CTC1Q2NKJ3 1217 aa8.34□□□□□ -1.07
USP28-207ENST00000538475 TMEM259Q4ZIN3 620 aa8.34□□□□□ -1.07
USP28-207ENST00000538475 PANK2Q9BZ23 570 aa8.34□□□□□ -1.07
USP28-207ENST00000538475 GTPBP4Q9BZE4 634 aaKnown RBP8.34□□□□□ -1.07
USP28-207ENST00000538475 TLL2Q9Y6L7 1015 aa8.34□□□□□ -1.07
USP28-207ENST00000538475 RTEL1-TNFRSF6BF6WH68 1400 aa8.34□□□□□ -1.07
USP28-207ENST00000538475 GRIN2AQ12879 1464 aa8.33□□□□□ -1.08
USP28-207ENST00000538475 KIF20AO95235 890 aa8.33□□□□□ -1.08
USP28-207ENST00000538475 CT47B1P0C2W7 299 aaPredicted RBP8.33□□□□□ -1.08
USP28-207ENST00000538475 RBM25P49756 843 aaKnown RBP8.33□□□□□ -1.08
USP28-207ENST00000538475 PNMA1Q8ND90 353 aa8.33□□□□□ -1.08
USP28-207ENST00000538475 HPS1Q92902 700 aa8.33□□□□□ -1.08
USP28-207ENST00000538475 GPKOWQ92917 476 aaPredicted RBP eCLIP8.33□□□□□ -1.08
USP28-207ENST00000538475 NOL7Q9UMY1 257 aaKnown RBP8.33□□□□□ -1.08
USP28-207ENST00000538475 ADAMTS8Q9UP79 889 aa8.33□□□□□ -1.08
USP28-207ENST00000538475 MAST1Q9Y2H9 1570 aa8.33□□□□□ -1.08
USP28-207ENST00000538475 FAM135AQ9P2D6 1515 aa8.33□□□□□ -1.08
USP28-207ENST00000538475 GPATCH8Q9UKJ3 1502 aaKnown RBP8.33□□□□□ -1.08
USP28-207ENST00000538475 IQGAP3Q86VI3 1631 aa8.32□□□□□ -1.08
USP28-207ENST00000538475 NEURL4Q96JN8 1562 aa8.32□□□□□ -1.08
USP28-207ENST00000538475 MAGEB6P1A0A0J9YX57 407 aa8.32□□□□□ -1.08
USP28-207ENST00000538475 ZNF445P59923 1031 aa8.32□□□□□ -1.08
USP28-207ENST00000538475 RBM10P98175 930 aaKnown RBP8.32□□□□□ -1.08
USP28-207ENST00000538475 CRIPAKQ8N1N5 446 aa8.32□□□□□ -1.08
USP28-207ENST00000538475 TESK2Q96S53 571 aa8.32□□□□□ -1.08
USP28-207ENST00000538475 C22orf23Q9BZE7 217 aa8.32□□□□□ -1.08
USP28-207ENST00000538475 FKBPLQ9UIM3 349 aa8.32□□□□□ -1.08
USP28-207ENST00000538475 MYOM1P52179 1685 aa8.32□□□□□ -1.08
USP28-207ENST00000538475 UHRF1BP1LA0JNW5 1464 aa8.32□□□□□ -1.08
USP28-207ENST00000538475 NUP153P49790 1475 aaKnown RBP8.32□□□□□ -1.08
USP28-207ENST00000538475 WDR7Q9Y4E6 1490 aa8.32□□□□□ -1.08
USP28-207ENST00000538475 ERBB4Q15303 1308 aa8.31□□□□□ -1.08
USP28-207ENST00000538475 IGHDP01880 384 aa8.31□□□□□ -1.08
USP28-207ENST00000538475 PPP2R1AP30153 589 aa8.31□□□□□ -1.08
USP28-207ENST00000538475 FGD1P98174 961 aa8.31□□□□□ -1.08
USP28-207ENST00000538475 RAB3GAP1Q15042 981 aa8.31□□□□□ -1.08
USP28-207ENST00000538475 KLHL40Q2TBA0 621 aa8.31□□□□□ -1.08
USP28-207ENST00000538475 PDLIM2Q96JY6 352 aa8.31□□□□□ -1.08
USP28-207ENST00000538475 CARD14Q9BXL6 1004 aa8.31□□□□□ -1.08
USP28-207ENST00000538475 NUP155O75694 1391 aa8.31□□□□□ -1.08
USP28-207ENST00000538475 SPHKAPQ2M3C7 1700 aa8.31□□□□□ -1.08
USP28-207ENST00000538475 NASPP49321 788 aaPredicted RBP8.3□□□□□ -1.08
USP28-207ENST00000538475 SMCPP49901 116 aaPredicted RBP8.3□□□□□ -1.08
USP28-207ENST00000538475 RIPK4P57078 832 aa8.3□□□□□ -1.08
USP28-207ENST00000538475 DMTNQ08495 405 aa8.3□□□□□ -1.08
USP28-207ENST00000538475 ZNF326Q5BKZ1 582 aaKnown RBP8.3□□□□□ -1.08
USP28-207ENST00000538475 SASS6Q6UVJ0 657 aa8.3□□□□□ -1.08
USP28-207ENST00000538475 MPNDQ8N594 471 aa8.3□□□□□ -1.08
USP28-207ENST00000538475 CCDC94Q9BW85 323 aaPredicted RBP8.3□□□□□ -1.08
USP28-207ENST00000538475 PANK3Q9H999 370 aa8.3□□□□□ -1.08
USP28-207ENST00000538475 KNSTRNQ9Y448 316 aa8.3□□□□□ -1.08
USP28-207ENST00000538475 DUOX2Q9NRD8 1548 aa8.29□□□□□ -1.08
USP28-207ENST00000538475 CEP152O94986 1710 aa8.29□□□□□ -1.08
USP28-207ENST00000538475 LETM1O95202 739 aaPredicted RBP8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 184.5 ms