RNA–Protein interactions for RNA: ENST00000538136.1

MSH6-209, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 4,055 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-209ENST00000538136 TPTE2Q6XPS3 522 aa9.01□□□□□ -0.97
MSH6-209ENST00000538136 DNAJC2Q99543 621 aaKnown RBP9.01□□□□□ -0.97
MSH6-209ENST00000538136 EIF2AK4Q9P2K8 1649 aaKnown RBP9.01□□□□□ -0.97
MSH6-209ENST00000538136 SNAP23O00161 211 aa9.01□□□□□ -0.97
MSH6-209ENST00000538136 APPP05067 770 aa9.01□□□□□ -0.97
MSH6-209ENST00000538136 FNBP4Q8N3X1 1017 aaPredicted RBP9.01□□□□□ -0.97
MSH6-209ENST00000538136 NLRP3Q96P20 1036 aa9.01□□□□□ -0.97
MSH6-209ENST00000538136 TRIM35Q9UPQ4 493 aa9.01□□□□□ -0.97
MSH6-209ENST00000538136 PTCH1Q13635 1447 aa9.01□□□□□ -0.97
MSH6-209ENST00000538136 TSHZ3Q63HK5 1081 aa9.01□□□□□ -0.97
MSH6-209ENST00000538136 NOL8Q76FK4 1167 aaKnown RBP9.01□□□□□ -0.97
MSH6-209ENST00000538136 ZNF594Q96JF6 807 aaPredicted RBP9.01□□□□□ -0.97
MSH6-209ENST00000538136 GPR101Q96P66 508 aaPredicted RBP9.01□□□□□ -0.97
MSH6-209ENST00000538136 RGS17Q9UGC6 210 aaPredicted RBP9.01□□□□□ -0.97
MSH6-209ENST00000538136 ASXL1Q8IXJ9 1541 aa9.01□□□□□ -0.97
MSH6-209ENST00000538136 ADAMTSL3P82987 1691 aa9.01□□□□□ -0.97
MSH6-209ENST00000538136 FKBP4Q02790 459 aaKnown RBP eCLIP9□□□□□ -0.97
MSH6-209ENST00000538136 DDX46Q7L014 1031 aaKnown RBP9□□□□□ -0.97
MSH6-209ENST00000538136 TMEM57Q8N5G2 664 aa9□□□□□ -0.97
MSH6-209ENST00000538136 DNAAF4Q8WXU2 420 aa9□□□□□ -0.97
MSH6-209ENST00000538136 ARHGEF1Q92888 912 aaKnown RBP9□□□□□ -0.97
MSH6-209ENST00000538136 PUS7Q96PZ0 661 aaKnown RBP9□□□□□ -0.97
MSH6-209ENST00000538136 PA2G4Q9UQ80 394 aaKnown RBP9□□□□□ -0.97
MSH6-209ENST00000538136 POLR3AO14802 1390 aaPredicted RBP9□□□□□ -0.97
MSH6-209ENST00000538136 KDM4AO75164 1064 aa9□□□□□ -0.97
MSH6-209ENST00000538136 FAM161AQ3B820 660 aa9□□□□□ -0.97
MSH6-209ENST00000538136 LDHAL6AQ6ZMR3 332 aa9□□□□□ -0.97
MSH6-209ENST00000538136 DIP2AQ14689 1571 aa9□□□□□ -0.97
MSH6-209ENST00000538136 ITPK1Q13572 414 aa9□□□□□ -0.97
MSH6-209ENST00000538136 LMBR1LQ6UX01 489 aa9□□□□□ -0.97
MSH6-209ENST00000538136 FGD1P98174 961 aa9□□□□□ -0.97
MSH6-209ENST00000538136 API5Q9BZZ5 524 aaKnown RBP9□□□□□ -0.97
MSH6-209ENST00000538136 AATKQ6ZMQ8 1374 aa8.99□□□□□ -0.97
MSH6-209ENST00000538136 TAF5LO75529 589 aa8.99□□□□□ -0.97
MSH6-209ENST00000538136 ST5P78524 1137 aa8.99□□□□□ -0.97
MSH6-209ENST00000538136 HLFQ16534 295 aa8.99□□□□□ -0.97
MSH6-209ENST00000538136 METTL24Q5JXM2 366 aa8.99□□□□□ -0.97
MSH6-209ENST00000538136 LRRFIP2Q9Y608 721 aaKnown RBP8.99□□□□□ -0.97
MSH6-209ENST00000538136 IGSF1Q8N6C5 1336 aa8.99□□□□□ -0.97
MSH6-209ENST00000538136 NKTRP30414 1462 aaKnown RBP8.99□□□□□ -0.97
MSH6-209ENST00000538136 SMARCA5O60264 1052 aaPredicted RBP8.99□□□□□ -0.97
MSH6-209ENST00000538136 EAPPQ56P03 285 aaPredicted RBP8.99□□□□□ -0.97
MSH6-209ENST00000538136 SSH2Q76I76 1423 aa8.99□□□□□ -0.97
MSH6-209ENST00000538136 CHMP4AQ9BY43 222 aa8.99□□□□□ -0.97
MSH6-209ENST00000538136 SPON1Q9HCB6 807 aa8.99□□□□□ -0.97
MSH6-209ENST00000538136 SCAF8Q9UPN6 1271 aaKnown RBP8.99□□□□□ -0.97
MSH6-209ENST00000538136 TTLL12Q14166 644 aaPredicted RBP8.99□□□□□ -0.97
MSH6-209ENST00000538136 ZSCAN29Q8IWY8 852 aaPredicted RBP8.99□□□□□ -0.97
MSH6-209ENST00000538136 MROH2AA6NES4 1674 aa8.98□□□□□ -0.97
MSH6-209ENST00000538136 CRB1P82279 1406 aa8.98□□□□□ -0.97
MSH6-209ENST00000538136 IRS4O14654 1257 aaPredicted RBP8.98□□□□□ -0.97
MSH6-209ENST00000538136 CCDC8Q9H0W5 538 aaPredicted RBP8.98□□□□□ -0.97
MSH6-209ENST00000538136 IFT57Q9NWB7 429 aa8.98□□□□□ -0.97
MSH6-209ENST00000538136 SLIT1O75093 1534 aa8.98□□□□□ -0.97
MSH6-209ENST00000538136 TULP4Q9NRJ4 1543 aa8.98□□□□□ -0.97
MSH6-209ENST00000538136 C21orf2O43822 256 aa8.98□□□□□ -0.97
MSH6-209ENST00000538136 GIGYF1O75420 1035 aaPredicted RBP8.98□□□□□ -0.97
MSH6-209ENST00000538136 IGHMBP2P38935 993 aaKnown RBP8.98□□□□□ -0.97
MSH6-209ENST00000538136 EIF4A1P60842 406 aaKnown RBP8.98□□□□□ -0.97
MSH6-209ENST00000538136 MEIS3Q99687 375 aa8.98□□□□□ -0.97
MSH6-209ENST00000538136 NSD2O96028 1365 aa8.98□□□□□ -0.97
MSH6-209ENST00000538136 ANKARQ7Z5J8 1434 aa8.98□□□□□ -0.97
MSH6-209ENST00000538136 SLFN5Q08AF3 891 aa8.98□□□□□ -0.97
MSH6-209ENST00000538136 IFIT5Q13325 482 aaKnown RBP8.98□□□□□ -0.97
MSH6-209ENST00000538136 TEX13AQ9BXU3 409 aaPredicted RBP8.98□□□□□ -0.97
MSH6-209ENST00000538136 CPSF1Q10570 1443 aaKnown RBP8.98□□□□□ -0.97
MSH6-209ENST00000538136 IFIT2P09913 472 aaKnown RBP8.97□□□□□ -0.97
MSH6-209ENST00000538136 ANO8Q9HCE9 1232 aaPredicted RBP8.97□□□□□ -0.97
MSH6-209ENST00000538136 ERVV-2B6SEH9 535 aa8.97□□□□□ -0.97
MSH6-209ENST00000538136 SERPINB2P05120 415 aa8.97□□□□□ -0.97
MSH6-209ENST00000538136 WASHC4Q2M389 1173 aa8.97□□□□□ -0.97
MSH6-209ENST00000538136 ERICH6Q7L0X2 663 aa8.97□□□□□ -0.97
MSH6-209ENST00000538136 LRRC4BQ9NT99 713 aa8.97□□□□□ -0.97
MSH6-209ENST00000538136 CWC25Q9NXE8 425 aaPredicted RBP8.97□□□□□ -0.97
MSH6-209ENST00000538136 IQGAP1P46940 1657 aa8.97□□□□□ -0.97
MSH6-209ENST00000538136 H0YIN7 160 aa8.97□□□□□ -0.97
MSH6-209ENST00000538136 HSP90AA1P07900 732 aaKnown RBP8.97□□□□□ -0.97
MSH6-209ENST00000538136 DOK7Q18PE1 504 aa8.97□□□□□ -0.97
MSH6-209ENST00000538136 OLFM4Q6UX06 510 aa8.97□□□□□ -0.97
MSH6-209ENST00000538136 C2CD5Q86YS7 1000 aa8.97□□□□□ -0.97
MSH6-209ENST00000538136 THRAP3Q9Y2W1 955 aaKnown RBP8.97□□□□□ -0.97
MSH6-209ENST00000538136 IQSEC2Q5JU85 1478 aa8.97□□□□□ -0.97
MSH6-209ENST00000538136 ATP2B2Q01814 1243 aa8.96□□□□□ -0.97
MSH6-209ENST00000538136 PPP1R42Q7Z4L9 355 aa8.96□□□□□ -0.97
MSH6-209ENST00000538136 SPRYD3Q8NCJ5 442 aa8.96□□□□□ -0.97
MSH6-209ENST00000538136 LINC00116Q8NCU8 138 aa8.96□□□□□ -0.97
MSH6-209ENST00000538136 UPF1Q92900 1129 aaKnown RBP eCLIP8.96□□□□□ -0.97
MSH6-209ENST00000538136 HYPKQ9NX55 129 aa8.96□□□□□ -0.97
MSH6-209ENST00000538136 EP400Q96L91 3159 aa8.96□□□□□ -0.97
MSH6-209ENST00000538136 UTP14AQ9BVJ6 771 aaKnown RBP8.96□□□□□ -0.97
MSH6-209ENST00000538136 ATF7IPQ6VMQ6 1270 aa8.96□□□□□ -0.98
MSH6-209ENST00000538136 NDUFB9Q9Y6M9 179 aa8.96□□□□□ -0.98
MSH6-209ENST00000538136 HMMRO75330 724 aa8.95□□□□□ -0.98
MSH6-209ENST00000538136 SLC15A2Q16348 729 aa8.95□□□□□ -0.98
MSH6-209ENST00000538136 WDR63Q8IWG1 891 aa8.95□□□□□ -0.98
MSH6-209ENST00000538136 CEP126Q9P2H0 1117 aa8.95□□□□□ -0.98
MSH6-209ENST00000538136 ZBED9Q6R2W3 1325 aa8.95□□□□□ -0.98
MSH6-209ENST00000538136 IDH1O75874 414 aaKnown RBP8.95□□□□□ -0.98
MSH6-209ENST00000538136 MS4A1P11836 297 aa8.95□□□□□ -0.98
MSH6-209ENST00000538136 RARSP54136 660 aaKnown RBP8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms