RNA–Protein interactions for RNA: ENST00000535997.6

CHMP1A-202, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2 BASIC

Gene CHMP1A, Length 2,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-202ENST00000535997 MED1Q15648 1581 aaPredicted RBP19.5■□□□□ 0.71
CHMP1A-202ENST00000535997 PRPF40AO75400 957 aaKnown RBP19.49■□□□□ 0.71
CHMP1A-202ENST00000535997 NASPP49321 788 aaPredicted RBP19.49■□□□□ 0.71
CHMP1A-202ENST00000535997 TEFQ10587 303 aa19.49■□□□□ 0.71
CHMP1A-202ENST00000535997 AMOTQ4VCS5 1084 aa19.49■□□□□ 0.71
CHMP1A-202ENST00000535997 PLEKHO1Q53GL0 409 aaPredicted RBP19.49■□□□□ 0.71
CHMP1A-202ENST00000535997 CHPF2Q9P2E5 772 aa19.49■□□□□ 0.71
CHMP1A-202ENST00000535997 CHD2O14647 1828 aaKnown RBP19.49■□□□□ 0.71
CHMP1A-202ENST00000535997 ESPNB1AK53 854 aa19.49■□□□□ 0.71
CHMP1A-202ENST00000535997 NBPF7P0C2Y1 421 aaPredicted RBP19.49■□□□□ 0.71
CHMP1A-202ENST00000535997 NCLP19338 710 aaKnown RBP19.49■□□□□ 0.71
CHMP1A-202ENST00000535997 NUTM1Q86Y26 1132 aa19.49■□□□□ 0.71
CHMP1A-202ENST00000535997 ANP32BQ92688 251 aaKnown RBP19.49■□□□□ 0.71
CHMP1A-202ENST00000535997 ADGRL3Q9HAR2 1447 aa19.48■□□□□ 0.71
CHMP1A-202ENST00000535997 BTBD11A6QL63 1104 aa19.48■□□□□ 0.71
CHMP1A-202ENST00000535997 CCDC173Q0VFZ6 552 aa19.48■□□□□ 0.71
CHMP1A-202ENST00000535997 CAVIN1Q6NZI2 390 aaKnown RBP19.48■□□□□ 0.71
CHMP1A-202ENST00000535997 SETD1BQ9UPS6 1966 aaKnown RBP19.48■□□□□ 0.71
CHMP1A-202ENST00000535997 HSPA4P34932 840 aa19.48■□□□□ 0.71
CHMP1A-202ENST00000535997 ZSCAN23Q3MJ62 389 aa19.48■□□□□ 0.71
CHMP1A-202ENST00000535997 ESCO1Q5FWF5 840 aa19.48■□□□□ 0.71
CHMP1A-202ENST00000535997 PI4K2BQ8TCG2 481 aa19.48■□□□□ 0.71
CHMP1A-202ENST00000535997 PPP1R9BQ96SB3 815 aa19.48■□□□□ 0.71
CHMP1A-202ENST00000535997 BRD1O95696 1058 aa19.46■□□□□ 0.71
CHMP1A-202ENST00000535997 DBF4Q9UBU7 674 aaPredicted RBP19.46■□□□□ 0.71
CHMP1A-202ENST00000535997 ZNF530Q6P9A1 599 aaPredicted RBP19.46■□□□□ 0.71
CHMP1A-202ENST00000535997 KDM3BQ7LBC6 1761 aa19.46■□□□□ 0.71
CHMP1A-202ENST00000535997 KCNQ3O43525 872 aa19.45■□□□□ 0.7
CHMP1A-202ENST00000535997 DNAJC5Q9H3Z4 198 aa19.45■□□□□ 0.7
CHMP1A-202ENST00000535997 MTX1Q13505 466 aa19.45■□□□□ 0.7
CHMP1A-202ENST00000535997 GPT2Q8TD30 523 aa19.45■□□□□ 0.7
CHMP1A-202ENST00000535997 PHRF1Q9P1Y6 1649 aaKnown RBP19.44■□□□□ 0.7
CHMP1A-202ENST00000535997 MPRIPQ6WCQ1 1025 aa19.44■□□□□ 0.7
CHMP1A-202ENST00000535997 CNTROBQ8N137 903 aa19.44■□□□□ 0.7
CHMP1A-202ENST00000535997 HDAC5Q9UQL6 1122 aa19.44■□□□□ 0.7
CHMP1A-202ENST00000535997 SGSM2O43147 1006 aa19.44■□□□□ 0.7
CHMP1A-202ENST00000535997 LRRC59Q96AG4 307 aaKnown RBP19.43■□□□□ 0.7
CHMP1A-202ENST00000535997 IL25Q9H293 177 aa19.43■□□□□ 0.7
CHMP1A-202ENST00000535997 LMO7Q8WWI1 1683 aa19.43■□□□□ 0.7
CHMP1A-202ENST00000535997 TTC41PQ6P2S7 1318 aa19.43■□□□□ 0.7
CHMP1A-202ENST00000535997 USP42Q9H9J4 1324 aaKnown RBP19.43■□□□□ 0.7
CHMP1A-202ENST00000535997 RNMTO43148 476 aaKnown RBP19.42■□□□□ 0.7
CHMP1A-202ENST00000535997 ALDH1L1O75891 902 aa19.42■□□□□ 0.7
CHMP1A-202ENST00000535997 MBD3O95983 291 aa19.42■□□□□ 0.7
CHMP1A-202ENST00000535997 GCP02774 474 aa19.42■□□□□ 0.7
CHMP1A-202ENST00000535997 C1orf141Q5JVX7 400 aa19.42■□□□□ 0.7
CHMP1A-202ENST00000535997 ARHGEF25Q86VW2 580 aa19.42■□□□□ 0.7
CHMP1A-202ENST00000535997 ADCY9O60503 1353 aa19.42■□□□□ 0.7
CHMP1A-202ENST00000535997 RBM33Q96EV2 1170 aaKnown RBP19.42■□□□□ 0.7
CHMP1A-202ENST00000535997 UPF3BQ9BZI7 483 aaKnown RBP19.42■□□□□ 0.7
CHMP1A-202ENST00000535997 NCAPD2Q15021 1401 aa19.42■□□□□ 0.7
CHMP1A-202ENST00000535997 RAD50Q92878 1312 aa19.41■□□□□ 0.7
CHMP1A-202ENST00000535997 ZBTB7CA1YPR0 619 aa19.41■□□□□ 0.7
CHMP1A-202ENST00000535997 GIGYF1O75420 1035 aaPredicted RBP19.41■□□□□ 0.7
CHMP1A-202ENST00000535997 PLEKHG5O94827 1062 aa19.41■□□□□ 0.7
CHMP1A-202ENST00000535997 OVOS2A0A0G2JMS6 1433 aa19.41■□□□□ 0.7
CHMP1A-202ENST00000535997 GLRX3O76003 335 aaKnown RBP19.4■□□□□ 0.7
CHMP1A-202ENST00000535997 KSR2Q6VAB6 950 aa19.4■□□□□ 0.7
CHMP1A-202ENST00000535997 HEG1Q9ULI3 1381 aa19.4■□□□□ 0.7
CHMP1A-202ENST00000535997 ERBB4Q15303 1308 aa19.4■□□□□ 0.7
CHMP1A-202ENST00000535997 MAP4K4O95819 1239 aaPredicted RBP19.4■□□□□ 0.7
CHMP1A-202ENST00000535997 ANXA1P04083 346 aa19.4■□□□□ 0.7
CHMP1A-202ENST00000535997 CLASRPQ8N2M8 674 aaKnown RBP19.4■□□□□ 0.7
CHMP1A-202ENST00000535997 PRIM1P49642 420 aaKnown RBP19.39■□□□□ 0.69
CHMP1A-202ENST00000535997 KIAA1211Q6ZU35 1233 aa19.39■□□□□ 0.69
CHMP1A-202ENST00000535997 C9orf78Q9NZ63 289 aaPredicted RBP19.39■□□□□ 0.69
CHMP1A-202ENST00000535997 RGPD2P0DJD1 1756 aa19.39■□□□□ 0.69
CHMP1A-202ENST00000535997 LSG1Q9H089 658 aaKnown RBP19.39■□□□□ 0.69
CHMP1A-202ENST00000535997 MAP3K2Q9Y2U5 619 aa19.39■□□□□ 0.69
CHMP1A-202ENST00000535997 OS9Q13438 667 aaPredicted RBP19.38■□□□□ 0.69
CHMP1A-202ENST00000535997 NOL8Q76FK4 1167 aaKnown RBP19.38■□□□□ 0.69
CHMP1A-202ENST00000535997 ERC1Q8IUD2 1116 aa19.38■□□□□ 0.69
CHMP1A-202ENST00000535997 FOXD4L5Q5VV16 416 aaPredicted RBP19.37■□□□□ 0.69
CHMP1A-202ENST00000535997 LRSAM1Q6UWE0 723 aa19.37■□□□□ 0.69
CHMP1A-202ENST00000535997 FOXD4L4Q8WXT5 416 aaPredicted RBP19.37■□□□□ 0.69
CHMP1A-202ENST00000535997 RBSNQ9H1K0 784 aa19.37■□□□□ 0.69
CHMP1A-202ENST00000535997 HYPKQ9NX55 129 aa19.37■□□□□ 0.69
CHMP1A-202ENST00000535997 TMEM63CQ9P1W3 806 aa19.37■□□□□ 0.69
CHMP1A-202ENST00000535997 SNX14Q9Y5W7 946 aa19.37■□□□□ 0.69
CHMP1A-202ENST00000535997 WDR33Q9C0J8 1336 aaKnown RBP19.37■□□□□ 0.69
CHMP1A-202ENST00000535997 ANKRD24Q8TF21 1146 aa19.37■□□□□ 0.69
CHMP1A-202ENST00000535997 RUFY2Q8WXA3 655 aa19.37■□□□□ 0.69
CHMP1A-202ENST00000535997 CHAMP1Q96JM3 812 aa19.37■□□□□ 0.69
CHMP1A-202ENST00000535997 RBM27Q9P2N5 1060 aaKnown RBP19.36■□□□□ 0.69
CHMP1A-202ENST00000535997 HS1BP3Q53T59 392 aa19.36■□□□□ 0.69
CHMP1A-202ENST00000535997 CWC27Q6UX04 472 aaKnown RBP19.36■□□□□ 0.69
CHMP1A-202ENST00000535997 TTC14Q96N46 770 aa19.36■□□□□ 0.69
CHMP1A-202ENST00000535997 ECHDC1Q9NTX5 307 aa19.36■□□□□ 0.69
CHMP1A-202ENST00000535997 GPATCH3Q96I76 525 aa19.35■□□□□ 0.69
CHMP1A-202ENST00000535997 ORAI2Q96SN7 254 aa19.35■□□□□ 0.69
CHMP1A-202ENST00000535997 LINS1Q8NG48 757 aa19.35■□□□□ 0.69
CHMP1A-202ENST00000535997 NSFL1CQ9UNZ2 370 aaKnown RBP19.35■□□□□ 0.69
CHMP1A-202ENST00000535997 ZSCAN30Q86W11 494 aa19.34■□□□□ 0.69
CHMP1A-202ENST00000535997 DIAPH3Q9NSV4 1193 aa19.34■□□□□ 0.69
CHMP1A-202ENST00000535997 LIMCH1Q9UPQ0 1083 aa19.34■□□□□ 0.69
CHMP1A-202ENST00000535997 SLIT3O75094 1523 aa19.34■□□□□ 0.69
CHMP1A-202ENST00000535997 DDX58O95786 925 aaKnown RBP19.34■□□□□ 0.69
CHMP1A-202ENST00000535997 PROSER3Q2NL68 480 aa19.34■□□□□ 0.69
CHMP1A-202ENST00000535997 RASEFQ8IZ41 740 aa19.34■□□□□ 0.69
CHMP1A-202ENST00000535997 PDLIM2Q96JY6 352 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms