RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 C6orf229H3BNL8 230 aa21.12■□□□□ 0.97
SFSWAP-203ENST00000535236 FGFR1OPO95684 399 aaKnown RBP21.12■□□□□ 0.97
SFSWAP-203ENST00000535236 SSRP1Q08945 709 aaKnown RBP21.12■□□□□ 0.97
SFSWAP-203ENST00000535236 TAF3Q5VWG9 929 aa21.12■□□□□ 0.97
SFSWAP-203ENST00000535236 CCDC82Q8N4S0 544 aa21.12■□□□□ 0.97
SFSWAP-203ENST00000535236 CCDC102AQ96A19 550 aa21.12■□□□□ 0.97
SFSWAP-203ENST00000535236 NLRP5P59047 1200 aa21.11■□□□□ 0.97
SFSWAP-203ENST00000535236 SH2B1Q9NRF2 756 aaPredicted RBP21.11■□□□□ 0.97
SFSWAP-203ENST00000535236 KIF20AO95235 890 aa21.11■□□□□ 0.97
SFSWAP-203ENST00000535236 GOLGA8AA7E2F4 631 aa21.1■□□□□ 0.97
SFSWAP-203ENST00000535236 GOLGA8BA8MQT2 603 aa21.1■□□□□ 0.97
SFSWAP-203ENST00000535236 FOXO3O43524 673 aa21.1■□□□□ 0.97
SFSWAP-203ENST00000535236 ANO10Q9NW15 660 aa21.1■□□□□ 0.97
SFSWAP-203ENST00000535236 BRPF3Q9ULD4 1205 aa21.1■□□□□ 0.97
SFSWAP-203ENST00000535236 IFIT3O14879 490 aaKnown RBP21.1■□□□□ 0.97
SFSWAP-203ENST00000535236 A0A087WZG4 1122 aa21.1■□□□□ 0.97
SFSWAP-203ENST00000535236 CATIPQ7Z7H3 387 aa21.1■□□□□ 0.97
SFSWAP-203ENST00000535236 SCAND2PQ9GZW5 306 aaPredicted RBP21.1■□□□□ 0.97
SFSWAP-203ENST00000535236 ABCC11Q96J66 1382 aa21.1■□□□□ 0.97
SFSWAP-203ENST00000535236 DBF4Q9UBU7 674 aaPredicted RBP21.1■□□□□ 0.97
SFSWAP-203ENST00000535236 TMEM87AQ8NBN3 555 aa21.1■□□□□ 0.97
SFSWAP-203ENST00000535236 BAG4O95429 457 aaKnown RBP21.09■□□□□ 0.97
SFSWAP-203ENST00000535236 MCM4P33991 863 aa21.09■□□□□ 0.97
SFSWAP-203ENST00000535236 GPTP24298 496 aa21.09■□□□□ 0.97
SFSWAP-203ENST00000535236 CCDC91Q7Z6B0 441 aa21.09■□□□□ 0.97
SFSWAP-203ENST00000535236 SFPQP23246 707 aaKnown RBP eCLIP21.08■□□□□ 0.97
SFSWAP-203ENST00000535236 FEZ1Q99689 392 aa21.08■□□□□ 0.97
SFSWAP-203ENST00000535236 AMOTL2Q9Y2J4 779 aa21.08■□□□□ 0.97
SFSWAP-203ENST00000535236 PPM1FP49593 454 aaPredicted RBP21.08■□□□□ 0.96
SFSWAP-203ENST00000535236 GUCY1B3Q02153 619 aa21.08■□□□□ 0.96
SFSWAP-203ENST00000535236 SYCE3A1L190 88 aa21.08■□□□□ 0.96
SFSWAP-203ENST00000535236 F6X3S4 739 aa21.08■□□□□ 0.96
SFSWAP-203ENST00000535236 ZBTB3Q9H5J0 574 aa21.08■□□□□ 0.96
SFSWAP-203ENST00000535236 LRPPRCP42704 1394 aaKnown RBP21.08■□□□□ 0.96
SFSWAP-203ENST00000535236 ZSCAN12O43309 604 aa21.07■□□□□ 0.96
SFSWAP-203ENST00000535236 LDHCP07864 332 aa21.07■□□□□ 0.96
SFSWAP-203ENST00000535236 SSH1Q8WYL5 1049 aa21.07■□□□□ 0.96
SFSWAP-203ENST00000535236 TEX13AQ9BXU3 409 aaPredicted RBP21.07■□□□□ 0.96
SFSWAP-203ENST00000535236 LIG1P18858 919 aa21.07■□□□□ 0.96
SFSWAP-203ENST00000535236 UBXN4Q92575 508 aa21.07■□□□□ 0.96
SFSWAP-203ENST00000535236 CDC5LQ99459 802 aaKnown RBP21.07■□□□□ 0.96
SFSWAP-203ENST00000535236 CCDC141Q6ZP82 1450 aa21.07■□□□□ 0.96
SFSWAP-203ENST00000535236 EMILIN1Q9Y6C2 1016 aa21.06■□□□□ 0.96
SFSWAP-203ENST00000535236 NESP48681 1621 aa21.06■□□□□ 0.96
SFSWAP-203ENST00000535236 TTF1Q15361 905 aaPredicted RBP21.06■□□□□ 0.96
SFSWAP-203ENST00000535236 CCDC12Q8WUD4 166 aaPredicted RBP21.06■□□□□ 0.96
SFSWAP-203ENST00000535236 POLA1P09884 1462 aaPredicted RBP21.06■□□□□ 0.96
SFSWAP-203ENST00000535236 SPDYE4A6NLX3 237 aa21.06■□□□□ 0.96
SFSWAP-203ENST00000535236 DDX46Q7L014 1031 aaKnown RBP21.06■□□□□ 0.96
SFSWAP-203ENST00000535236 GBP3Q9H0R5 595 aa21.06■□□□□ 0.96
SFSWAP-203ENST00000535236 SUPT6HQ7KZ85 1726 aaKnown RBP21.05■□□□□ 0.96
SFSWAP-203ENST00000535236 CABP5Q9NP86 173 aa21.05■□□□□ 0.96
SFSWAP-203ENST00000535236 CRACR2AQ9BSW2 395 aa21.05■□□□□ 0.96
SFSWAP-203ENST00000535236 UQCRHLA0A096LP55 91 aa21.05■□□□□ 0.96
SFSWAP-203ENST00000535236 UQCRHP07919 91 aa21.05■□□□□ 0.96
SFSWAP-203ENST00000535236 KIF5CO60282 957 aa21.04■□□□□ 0.96
SFSWAP-203ENST00000535236 CCDC178Q5BJE1 867 aa21.04■□□□□ 0.96
SFSWAP-203ENST00000535236 TOP1P11387 765 aaKnown RBP21.04■□□□□ 0.96
SFSWAP-203ENST00000535236 DYDC1Q8WWB3 177 aa21.04■□□□□ 0.96
SFSWAP-203ENST00000535236 WASLO00401 505 aaPredicted RBP21.04■□□□□ 0.96
SFSWAP-203ENST00000535236 BAG3O95817 575 aa21.04■□□□□ 0.96
SFSWAP-203ENST00000535236 KIF2AO00139 706 aaPredicted RBP21.04■□□□□ 0.96
SFSWAP-203ENST00000535236 GSTTP1A0A1W2PQM5 241 aa21.03■□□□□ 0.96
SFSWAP-203ENST00000535236 CETN1Q12798 172 aa21.03■□□□□ 0.96
SFSWAP-203ENST00000535236 CD109Q6YHK3 1445 aa21.03■□□□□ 0.96
SFSWAP-203ENST00000535236 CNNM3Q8NE01 707 aa21.03■□□□□ 0.96
SFSWAP-203ENST00000535236 CTNNBL1Q8WYA6 563 aaPredicted RBP21.03■□□□□ 0.96
SFSWAP-203ENST00000535236 CCDC113Q9H0I3 377 aa21.03■□□□□ 0.96
SFSWAP-203ENST00000535236 PLEKHH1Q9ULM0 1364 aa21.03■□□□□ 0.96
SFSWAP-203ENST00000535236 KIF5BP33176 963 aa21.03■□□□□ 0.96
SFSWAP-203ENST00000535236 RARSP54136 660 aaKnown RBP21.03■□□□□ 0.96
SFSWAP-203ENST00000535236 CCDC183Q5T5S1 534 aa21.03■□□□□ 0.96
SFSWAP-203ENST00000535236 KRT28Q7Z3Y7 464 aa21.03■□□□□ 0.96
SFSWAP-203ENST00000535236 CALML4Q96GE6 196 aa21.03■□□□□ 0.96
SFSWAP-203ENST00000535236 PPP1R42Q7Z4L9 355 aa21.03■□□□□ 0.96
SFSWAP-203ENST00000535236 LUZP1Q86V48 1076 aa21.03■□□□□ 0.96
SFSWAP-203ENST00000535236 DHX37Q8IY37 1157 aaKnown RBP21.03■□□□□ 0.96
SFSWAP-203ENST00000535236 IFNL2Q8IZJ0 200 aa21.03■□□□□ 0.96
SFSWAP-203ENST00000535236 HLA-DOAP06340 250 aa21.02■□□□□ 0.96
SFSWAP-203ENST00000535236 LDHAL6AQ6ZMR3 332 aa21.02■□□□□ 0.96
SFSWAP-203ENST00000535236 CWC25Q9NXE8 425 aaPredicted RBP21.02■□□□□ 0.96
SFSWAP-203ENST00000535236 PDE4BQ07343 736 aa21.02■□□□□ 0.96
SFSWAP-203ENST00000535236 TDRD12Q587J7 1177 aaKnown RBP21.02■□□□□ 0.96
SFSWAP-203ENST00000535236 EVI5LQ96CN4 794 aa21.02■□□□□ 0.96
SFSWAP-203ENST00000535236 MAP3K2Q9Y2U5 619 aa21.02■□□□□ 0.96
SFSWAP-203ENST00000535236 SPTY2D1Q68D10 685 aaPredicted RBP21.02■□□□□ 0.96
SFSWAP-203ENST00000535236 NUP88Q99567 741 aaPredicted RBP21.02■□□□□ 0.96
SFSWAP-203ENST00000535236 USO1O60763 962 aaKnown RBP21.02■□□□□ 0.95
SFSWAP-203ENST00000535236 FERMT2Q96AC1 680 aa21.02■□□□□ 0.95
SFSWAP-203ENST00000535236 LIMCH1Q9UPQ0 1083 aa21.02■□□□□ 0.95
SFSWAP-203ENST00000535236 MACROD2A1Z1Q3 448 aa21.01■□□□□ 0.95
SFSWAP-203ENST00000535236 CCT2P78371 535 aaKnown RBP21.01■□□□□ 0.95
SFSWAP-203ENST00000535236 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP21.01■□□□□ 0.95
SFSWAP-203ENST00000535236 KAT14Q9H8E8 782 aa21.01■□□□□ 0.95
SFSWAP-203ENST00000535236 CASQ1P31415 396 aa21.01■□□□□ 0.95
SFSWAP-203ENST00000535236 TCP11L1Q9NUJ3 509 aa21.01■□□□□ 0.95
SFSWAP-203ENST00000535236 GOLIM4O00461 696 aa21.01■□□□□ 0.95
SFSWAP-203ENST00000535236 AMPD3Q01432 767 aa21.01■□□□□ 0.95
SFSWAP-203ENST00000535236 ZNF622Q969S3 477 aaKnown RBP eCLIP21.01■□□□□ 0.953e-7■□□□□ 10.5
SFSWAP-203ENST00000535236 PTPRCP08575 1304 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms