RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-223ENST00000533079 SOS1Q07889 1333 aaPredicted RBP17.07■□□□□ 0.32
CAPN1-223ENST00000533079 HSPA1AP0DMV8 641 aaKnown RBP17.07■□□□□ 0.32
CAPN1-223ENST00000533079 HSPA1BP0DMV9 641 aaKnown RBP17.07■□□□□ 0.32
CAPN1-223ENST00000533079 RASSF7Q02833 373 aa17.07■□□□□ 0.32
CAPN1-223ENST00000533079 NFATC2IPQ8NCF5 419 aa17.07■□□□□ 0.32
CAPN1-223ENST00000533079 TNNT2P45379 298 aaPredicted RBP17.06■□□□□ 0.32
CAPN1-223ENST00000533079 USPL1Q5W0Q7 1092 aa17.06■□□□□ 0.32
CAPN1-223ENST00000533079 TTLL6Q8N841 843 aa17.05■□□□□ 0.32
CAPN1-223ENST00000533079 NARFQ9UHQ1 456 aa17.04■□□□□ 0.32
CAPN1-223ENST00000533079 UBR2Q8IWV8 1755 aa17.03■□□□□ 0.32
CAPN1-223ENST00000533079 AKAP4Q5JQC9 854 aa17.03■□□□□ 0.32
CAPN1-223ENST00000533079 SCN7AQ01118 1682 aa17.03■□□□□ 0.32
CAPN1-223ENST00000533079 CYP19A1P11511 503 aaPredicted RBP17.02■□□□□ 0.32
CAPN1-223ENST00000533079 NFIXQ14938 502 aa17.02■□□□□ 0.32
CAPN1-223ENST00000533079 DPY19L2Q6NUT2 758 aa17.02■□□□□ 0.32
CAPN1-223ENST00000533079 AEBP1Q8IUX7 1158 aa17.02■□□□□ 0.32
CAPN1-223ENST00000533079 SLC52A2Q9HAB3 445 aa17.02■□□□□ 0.32
CAPN1-223ENST00000533079 TIMELESSQ9UNS1 1208 aa17.02■□□□□ 0.32
CAPN1-223ENST00000533079 PDZRN3Q9UPQ7 1066 aa17.02■□□□□ 0.32
CAPN1-223ENST00000533079 DNAJC10Q8IXB1 793 aa17.01■□□□□ 0.31
CAPN1-223ENST00000533079 VSIG10Q8N0Z9 540 aa17.01■□□□□ 0.31
CAPN1-223ENST00000533079 DICER1Q9UPY3 1922 aaKnown RBP17■□□□□ 0.31
CAPN1-223ENST00000533079 H0YIN7 160 aa17■□□□□ 0.31
CAPN1-223ENST00000533079 NFKBIEO00221 500 aa17■□□□□ 0.31
CAPN1-223ENST00000533079 SERPINB2P05120 415 aa17■□□□□ 0.31
CAPN1-223ENST00000533079 SULT6B1Q6IMI4 303 aa17■□□□□ 0.31
CAPN1-223ENST00000533079 CREBZFQ9NS37 354 aa17■□□□□ 0.31
CAPN1-223ENST00000533079 VIRMAQ69YN4 1812 aaKnown RBP17■□□□□ 0.31
CAPN1-223ENST00000533079 C2CD5Q86YS7 1000 aa16.99■□□□□ 0.31
CAPN1-223ENST00000533079 CARMIL3Q8ND23 1372 aa16.99■□□□□ 0.31
CAPN1-223ENST00000533079 FER1L6Q2WGJ9 1857 aa16.99■□□□□ 0.31
CAPN1-223ENST00000533079 CCDC88AQ3V6T2 1871 aa16.99■□□□□ 0.31
CAPN1-223ENST00000533079 COL11A2P13942 1736 aaPredicted RBP16.99■□□□□ 0.31
CAPN1-223ENST00000533079 LTBP3Q9NS15 1303 aa16.98■□□□□ 0.31
CAPN1-223ENST00000533079 ZBTB1Q9Y2K1 713 aa16.98■□□□□ 0.31
CAPN1-223ENST00000533079 ARFGEF2Q9Y6D5 1785 aa16.97■□□□□ 0.31
CAPN1-223ENST00000533079 ANKRD31Q8N7Z5 1873 aa16.97■□□□□ 0.31
CAPN1-223ENST00000533079 BCL2L12Q9HB09 334 aa16.97■□□□□ 0.31
CAPN1-223ENST00000533079 POTECB2RU33 542 aa16.96■□□□□ 0.31
CAPN1-223ENST00000533079 IL13P35225 146 aa16.96■□□□□ 0.31
CAPN1-223ENST00000533079 MORC1Q86VD1 984 aa16.96■□□□□ 0.31
CAPN1-223ENST00000533079 A0A087WZG4 1122 aa16.95■□□□□ 0.3
CAPN1-223ENST00000533079 PDE6BP35913 854 aa16.95■□□□□ 0.3
CAPN1-223ENST00000533079 ERFEQ4G0M1 354 aa16.95■□□□□ 0.3
CAPN1-223ENST00000533079 CHADLQ6NUI6 762 aa16.95■□□□□ 0.3
CAPN1-223ENST00000533079 POLR3GLQ9BT43 218 aa16.95■□□□□ 0.3
CAPN1-223ENST00000533079 RNMTO43148 476 aaKnown RBP16.94■□□□□ 0.3
CAPN1-223ENST00000533079 BRIP1Q9BX63 1249 aa16.94■□□□□ 0.3
CAPN1-223ENST00000533079 PANK3Q9H999 370 aa16.94■□□□□ 0.3
CAPN1-223ENST00000533079 CNTNAP1P78357 1384 aa16.93■□□□□ 0.3
CAPN1-223ENST00000533079 STARD3NLO95772 234 aa16.93■□□□□ 0.3
CAPN1-223ENST00000533079 SOGA3Q5TF21 947 aa16.93■□□□□ 0.3
CAPN1-223ENST00000533079 SCN4AP35499 1836 aa16.92■□□□□ 0.3
CAPN1-223ENST00000533079 IQCA1LA6NCM1 817 aa16.92■□□□□ 0.3
CAPN1-223ENST00000533079 EIF5P55010 431 aaKnown RBP16.92■□□□□ 0.3
CAPN1-223ENST00000533079 SLC39A6Q13433 755 aa16.92■□□□□ 0.3
CAPN1-223ENST00000533079 TAOK3Q9H2K8 898 aa16.92■□□□□ 0.3
CAPN1-223ENST00000533079 LGR6Q9HBX8 967 aa16.92■□□□□ 0.3
CAPN1-223ENST00000533079 PRDM10Q9NQV6 1147 aa16.92■□□□□ 0.3
CAPN1-223ENST00000533079 BCORQ6W2J9 1755 aa16.92■□□□□ 0.3
CAPN1-223ENST00000533079 TTC5Q8N0Z6 440 aa16.91■□□□□ 0.3
CAPN1-223ENST00000533079 C21orf2O43822 256 aa16.9■□□□□ 0.3
CAPN1-223ENST00000533079 CANXP27824 592 aaKnown RBP16.9■□□□□ 0.3
CAPN1-223ENST00000533079 ZNF622Q969S3 477 aaKnown RBP eCLIP16.9■□□□□ 0.33e-6■■■■□ 24.2
CAPN1-223ENST00000533079 MKRN1Q9UHC7 482 aaKnown RBP16.9■□□□□ 0.3
CAPN1-223ENST00000533079 TBC1D9BQ66K14 1250 aa16.89■□□□□ 0.29
CAPN1-223ENST00000533079 PRR5LQ6MZQ0 368 aa16.89■□□□□ 0.29
CAPN1-223ENST00000533079 LDHDQ86WU2 507 aa16.89■□□□□ 0.29
CAPN1-223ENST00000533079 CNKSR1Q969H4 720 aa16.89■□□□□ 0.29
CAPN1-223ENST00000533079 TEX13AQ9BXU3 409 aaPredicted RBP16.89■□□□□ 0.29
CAPN1-223ENST00000533079 PASKQ96RG2 1323 aa16.89■□□□□ 0.29
CAPN1-223ENST00000533079 CLSPNQ9HAW4 1339 aa16.89■□□□□ 0.29
CAPN1-223ENST00000533079 SIPA1L3O60292 1781 aaPredicted RBP16.89■□□□□ 0.29
CAPN1-223ENST00000533079 EIF4G2P78344 907 aaKnown RBP eCLIP16.88■□□□□ 0.29
CAPN1-223ENST00000533079 STYK1Q6J9G0 422 aa16.88■□□□□ 0.29
CAPN1-223ENST00000533079 BICDL1Q6ZP65 573 aa16.88■□□□□ 0.29
CAPN1-223ENST00000533079 AIDAQ96BJ3 306 aa16.88■□□□□ 0.29
CAPN1-223ENST00000533079 L3MBTL3Q96JM7 780 aaPredicted RBP16.88■□□□□ 0.29
CAPN1-223ENST00000533079 KNSTRNQ9Y448 316 aa16.88■□□□□ 0.29
CAPN1-223ENST00000533079 CACNA1SQ13698 1873 aa16.88■□□□□ 0.29
CAPN1-223ENST00000533079 HEG1Q9ULI3 1381 aa16.88■□□□□ 0.29
CAPN1-223ENST00000533079 ADAMTSL1Q8N6G6 1762 aa16.87■□□□□ 0.29
CAPN1-223ENST00000533079 FOXN1O15353 648 aa16.87■□□□□ 0.29
CAPN1-223ENST00000533079 IL6STP40189 918 aaPredicted RBP16.87■□□□□ 0.29
CAPN1-223ENST00000533079 CTCFP49711 727 aaPredicted RBP16.87■□□□□ 0.29
CAPN1-223ENST00000533079 ST5P78524 1137 aa16.87■□□□□ 0.29
CAPN1-223ENST00000533079 CNBD1Q8NA66 436 aa16.87■□□□□ 0.29
CAPN1-223ENST00000533079 DDNO94850 711 aaPredicted RBP16.86■□□□□ 0.29
CAPN1-223ENST00000533079 MTHFSDQ2M296 383 aaKnown RBP16.86■□□□□ 0.29
CAPN1-223ENST00000533079 PRPF40BQ6NWY9 871 aaKnown RBP16.86■□□□□ 0.29
CAPN1-223ENST00000533079 NPHP1O15259 732 aa16.85■□□□□ 0.29
CAPN1-223ENST00000533079 SRGNP10124 158 aa16.85■□□□□ 0.29
CAPN1-223ENST00000533079 NPM2Q86SE8 214 aaKnown RBP16.85■□□□□ 0.29
CAPN1-223ENST00000533079 SLX4Q8IY92 1834 aa16.84■□□□□ 0.29
CAPN1-223ENST00000533079 TMEM88BA6NKF7 163 aa16.84■□□□□ 0.29
CAPN1-223ENST00000533079 HMOX1P09601 288 aa16.84■□□□□ 0.29
CAPN1-223ENST00000533079 POTEIP0CG38 1075 aa16.84■□□□□ 0.29
CAPN1-223ENST00000533079 POTEJP0CG39 1038 aa16.84■□□□□ 0.29
CAPN1-223ENST00000533079 MASTLQ96GX5 879 aa16.84■□□□□ 0.29
CAPN1-223ENST00000533079 SETDB2Q96T68 719 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms