RNA–Protein interactions for RNA: ENST00000528865.5

CSTF3-208, Transcript of cleavage stimulation factor subunit 3, human

TSL 5

Gene CSTF3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSTF3-208	ENST00000528865	AKAP4	Q5JQC9	854 aa		10.17	□□□□□ -0.78
CSTF3-208	ENST00000528865	TSHZ3	Q63HK5	1081 aa		10.17	□□□□□ -0.78
CSTF3-208	ENST00000528865	LRSAM1	Q6UWE0	723 aa		10.17	□□□□□ -0.78
CSTF3-208	ENST00000528865	KLHL34	Q8N239	644 aa		10.17	□□□□□ -0.78
CSTF3-208	ENST00000528865	KCNH5	Q8NCM2	988 aa		10.17	□□□□□ -0.78
CSTF3-208	ENST00000528865	DNAAF4	Q8WXU2	420 aa		10.17	□□□□□ -0.78
CSTF3-208	ENST00000528865	KCNB2	Q92953	911 aa		10.17	□□□□□ -0.78
CSTF3-208	ENST00000528865	RILPL2	Q969X0	211 aa		10.17	□□□□□ -0.78
CSTF3-208	ENST00000528865	HEG1	Q9ULI3	1381 aa		10.16	□□□□□ -0.78
CSTF3-208	ENST00000528865	TTC41P	Q6P2S7	1318 aa		10.16	□□□□□ -0.78
CSTF3-208	ENST00000528865	ALDH1L1	O75891	902 aa		10.16	□□□□□ -0.78
CSTF3-208	ENST00000528865	PRIM1	P49642	420 aa	Known RBP	10.16	□□□□□ -0.78
CSTF3-208	ENST00000528865	AMOT	Q4VCS5	1084 aa		10.16	□□□□□ -0.78
CSTF3-208	ENST00000528865	PLEKHO1	Q53GL0	409 aa	Predicted RBP	10.16	□□□□□ -0.78
CSTF3-208	ENST00000528865	NBPF6	Q5VWK0	638 aa		10.16	□□□□□ -0.78
CSTF3-208	ENST00000528865	ZSCAN30	Q86W11	494 aa		10.16	□□□□□ -0.78
CSTF3-208	ENST00000528865	ANP32B	Q92688	251 aa	Known RBP	10.16	□□□□□ -0.78
CSTF3-208	ENST00000528865	NECTIN2	Q92692	538 aa		10.16	□□□□□ -0.78
CSTF3-208	ENST00000528865	NBPF4	Q96M43	638 aa		10.16	□□□□□ -0.78
CSTF3-208	ENST00000528865	TTC14	Q96N46	770 aa		10.16	□□□□□ -0.78
CSTF3-208	ENST00000528865	LSG1	Q9H089	658 aa	Known RBP	10.16	□□□□□ -0.78
CSTF3-208	ENST00000528865	LGR6	Q9HBX8	967 aa		10.16	□□□□□ -0.78
CSTF3-208	ENST00000528865	ANO2	Q9NQ90	1003 aa		10.16	□□□□□ -0.78
CSTF3-208	ENST00000528865	TMEM63C	Q9P1W3	806 aa		10.16	□□□□□ -0.78
CSTF3-208	ENST00000528865	NFAT5	O94916	1531 aa		10.16	□□□□□ -0.78
CSTF3-208	ENST00000528865	OVOS2	A0A0G2JMS6	1433 aa		10.16	□□□□□ -0.78
CSTF3-208	ENST00000528865	RAD50	Q92878	1312 aa		10.15	□□□□□ -0.78
CSTF3-208	ENST00000528865	NCL	P19338	710 aa	Known RBP	10.15	□□□□□ -0.78
CSTF3-208	ENST00000528865	NUTM2G	Q5VZR2	741 aa		10.15	□□□□□ -0.78
CSTF3-208	ENST00000528865	NUTM1	Q86Y26	1132 aa		10.15	□□□□□ -0.78
CSTF3-208	ENST00000528865	TMEM87A	Q8NBN3	555 aa		10.15	□□□□□ -0.78
CSTF3-208	ENST00000528865	LTV1	Q96GA3	475 aa	Predicted RBP	10.15	□□□□□ -0.78
CSTF3-208	ENST00000528865	IL1RAPL2	Q9NP60	686 aa		10.15	□□□□□ -0.78
CSTF3-208	ENST00000528865	HDAC5	Q9UQL6	1122 aa		10.15	□□□□□ -0.78
CSTF3-208	ENST00000528865	LMTK3	Q96Q04	1460 aa		10.15	□□□□□ -0.78
CSTF3-208	ENST00000528865	AK9	Q5TCS8	1911 aa		10.15	□□□□□ -0.79
CSTF3-208	ENST00000528865	PHRF1	Q9P1Y6	1649 aa	Known RBP	10.15	□□□□□ -0.79
CSTF3-208	ENST00000528865	KDM3B	Q7LBC6	1761 aa		10.14	□□□□□ -0.79
CSTF3-208	ENST00000528865	WDR33	Q9C0J8	1336 aa	Known RBP	10.14	□□□□□ -0.79
CSTF3-208	ENST00000528865	RNMT	O43148	476 aa	Known RBP	10.14	□□□□□ -0.79
CSTF3-208	ENST00000528865	SRGAP3	O43295	1099 aa		10.14	□□□□□ -0.79
CSTF3-208	ENST00000528865	KCNQ3	O43525	872 aa		10.14	□□□□□ -0.79
CSTF3-208	ENST00000528865	GLRX3	O76003	335 aa	Known RBP	10.14	□□□□□ -0.79
CSTF3-208	ENST00000528865	NBPF7	P0C2Y1	421 aa	Predicted RBP	10.14	□□□□□ -0.79
CSTF3-208	ENST00000528865	CNTROB	Q8N137	903 aa		10.14	□□□□□ -0.79
CSTF3-208	ENST00000528865	IL25	Q9H293	177 aa		10.14	□□□□□ -0.79
CSTF3-208	ENST00000528865	CHPF2	Q9P2E5	772 aa		10.14	□□□□□ -0.79
CSTF3-208	ENST00000528865	RBM27	Q9P2N5	1060 aa	Known RBP	10.14	□□□□□ -0.79
CSTF3-208	ENST00000528865	NSFL1C	Q9UNZ2	370 aa	Known RBP	10.14	□□□□□ -0.79
CSTF3-208	ENST00000528865	SNX14	Q9Y5W7	946 aa		10.14	□□□□□ -0.79
CSTF3-208	ENST00000528865	ADCY9	O60503	1353 aa		10.14	□□□□□ -0.79
CSTF3-208	ENST00000528865	UTY	O14607	1347 aa		10.13	□□□□□ -0.79
CSTF3-208	ENST00000528865	PI4KAP2	A4QPH2	592 aa		10.13	□□□□□ -0.79
CSTF3-208	ENST00000528865	BTBD11	A6QL63	1104 aa		10.13	□□□□□ -0.79
CSTF3-208	ENST00000528865	EIF2S2	P20042	333 aa	Known RBP	10.13	□□□□□ -0.79
CSTF3-208	ENST00000528865	MCM5	P33992	734 aa		10.13	□□□□□ -0.79
CSTF3-208	ENST00000528865	TERF1	P54274	439 aa		10.13	□□□□□ -0.79
CSTF3-208	ENST00000528865	KSR2	Q6VAB6	950 aa		10.13	□□□□□ -0.79
CSTF3-208	ENST00000528865	ARHGEF25	Q86VW2	580 aa		10.13	□□□□□ -0.79
CSTF3-208	ENST00000528865	USHBP1	Q8N6Y0	703 aa		10.13	□□□□□ -0.79
CSTF3-208	ENST00000528865	PI4KAP1	Q8N8J0	262 aa		10.13	□□□□□ -0.79
CSTF3-208	ENST00000528865	TM6SF1	Q9BZW5	370 aa		10.13	□□□□□ -0.79
CSTF3-208	ENST00000528865	SNRK	Q9NRH2	765 aa		10.13	□□□□□ -0.79
CSTF3-208	ENST00000528865	DBF4	Q9UBU7	674 aa	Predicted RBP	10.13	□□□□□ -0.79
CSTF3-208	ENST00000528865	NOL7	Q9UMY1	257 aa	Known RBP	10.13	□□□□□ -0.79
CSTF3-208	ENST00000528865	CRYBG1	Q9Y4K1	1723 aa		10.13	□□□□□ -0.79
CSTF3-208	ENST00000528865	LMO7	Q8WWI1	1683 aa		10.12	□□□□□ -0.79
CSTF3-208	ENST00000528865	ZNF500	O60304	480 aa	Predicted RBP	10.12	□□□□□ -0.79
CSTF3-208	ENST00000528865	OFD1	O75665	1012 aa		10.12	□□□□□ -0.79
CSTF3-208	ENST00000528865	ERC1	Q8IUD2	1116 aa		10.12	□□□□□ -0.79
CSTF3-208	ENST00000528865	SYAP1	Q96A49	352 aa	Predicted RBP	10.12	□□□□□ -0.79
CSTF3-208	ENST00000528865	CHD2	O14647	1828 aa	Known RBP	10.12	□□□□□ -0.79
CSTF3-208	ENST00000528865	FER1L4	A9Z1Z3	1794 aa		10.11	□□□□□ -0.79
CSTF3-208	ENST00000528865	GIGYF1	O75420	1035 aa	Predicted RBP	10.11	□□□□□ -0.79
CSTF3-208	ENST00000528865	TPM2	P07951	284 aa		10.11	□□□□□ -0.79
CSTF3-208	ENST00000528865	PSME1	Q06323	249 aa		10.11	□□□□□ -0.79
CSTF3-208	ENST00000528865	TEF	Q10587	303 aa		10.11	□□□□□ -0.79
CSTF3-208	ENST00000528865	UVSSA	Q2YD98	709 aa		10.11	□□□□□ -0.79
CSTF3-208	ENST00000528865	ZNF530	Q6P9A1	599 aa	Predicted RBP	10.11	□□□□□ -0.79
CSTF3-208	ENST00000528865	KIAA1211	Q6ZU35	1233 aa		10.11	□□□□□ -0.79
CSTF3-208	ENST00000528865	ANKLE2	Q86XL3	938 aa		10.11	□□□□□ -0.79
CSTF3-208	ENST00000528865	RASEF	Q8IZ41	740 aa		10.11	□□□□□ -0.79
CSTF3-208	ENST00000528865	RUFY2	Q8WXA3	655 aa		10.11	□□□□□ -0.79
CSTF3-208	ENST00000528865	CHAMP1	Q96JM3	812 aa		10.11	□□□□□ -0.79
CSTF3-208	ENST00000528865	NAP1L5	Q96NT1	182 aa	Predicted RBP	10.11	□□□□□ -0.79
CSTF3-208	ENST00000528865	ECHDC1	Q9NTX5	307 aa		10.11	□□□□□ -0.79
CSTF3-208	ENST00000528865	LIMCH1	Q9UPQ0	1083 aa		10.11	□□□□□ -0.79
CSTF3-208	ENST00000528865	SLIT3	O75094	1523 aa		10.11	□□□□□ -0.79
CSTF3-208	ENST00000528865	RPAP1	Q9BWH6	1393 aa	Predicted RBP	10.11	□□□□□ -0.79
CSTF3-208	ENST00000528865	SYCE3	A1L190	88 aa		10.1	□□□□□ -0.79
CSTF3-208	ENST00000528865	VPS53	Q5VIR6	699 aa		10.1	□□□□□ -0.79
CSTF3-208	ENST00000528865	USP48	Q86UV5	1035 aa		10.1	□□□□□ -0.79
CSTF3-208	ENST00000528865	CLASRP	Q8N2M8	674 aa	Known RBP	10.1	□□□□□ -0.79
CSTF3-208	ENST00000528865	EVI5L	Q96CN4	794 aa		10.1	□□□□□ -0.79
CSTF3-208	ENST00000528865	ZSCAN31	Q96LW9	406 aa	Predicted RBP	10.1	□□□□□ -0.79
CSTF3-208	ENST00000528865	UPF3B	Q9BZI7	483 aa	Known RBP	10.1	□□□□□ -0.79
CSTF3-208	ENST00000528865	ZSWIM6	Q9HCJ5	1215 aa		10.1	□□□□□ -0.79
CSTF3-208	ENST00000528865	HYPK	Q9NX55	129 aa		10.1	□□□□□ -0.79
CSTF3-208	ENST00000528865	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	10.1	□□□□□ -0.79
CSTF3-208	ENST00000528865	LTN1	O94822	1766 aa		10.1	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms