RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 DNAAF4Q8WXU2 420 aa25.88■■□□□ 1.73
VPS28-209ENST00000528142 BEND3Q5T5X7 828 aa25.88■■□□□ 1.73
VPS28-209ENST00000528142 DDX21Q9NR30 783 aaKnown RBP eCLIP25.88■■□□□ 1.73
VPS28-209ENST00000528142 HYPKQ9NX55 129 aa25.88■■□□□ 1.73
VPS28-209ENST00000528142 SRCIN1Q9C0H9 1055 aa25.87■■□□□ 1.73
VPS28-209ENST00000528142 SLIT2O94813 1529 aa25.87■■□□□ 1.73
VPS28-209ENST00000528142 ERVV-2B6SEH9 535 aa25.86■■□□□ 1.73
VPS28-209ENST00000528142 TTC5Q8N0Z6 440 aa25.86■■□□□ 1.73
VPS28-209ENST00000528142 HMMRO75330 724 aa25.86■■□□□ 1.73
VPS28-209ENST00000528142 SEC24BO95487 1268 aa25.86■■□□□ 1.73
VPS28-209ENST00000528142 USP35Q9P2H5 1018 aa25.86■■□□□ 1.73
VPS28-209ENST00000528142 SNRPA1P09661 255 aaKnown RBP25.85■■□□□ 1.73
VPS28-209ENST00000528142 FMNL2Q96PY5 1086 aa25.84■■□□□ 1.73
VPS28-209ENST00000528142 KSR2Q6VAB6 950 aa25.84■■□□□ 1.73
VPS28-209ENST00000528142 SHANK3Q9BYB0 1731 aa25.83■■□□□ 1.73
VPS28-209ENST00000528142 ATP8B2P98198 1209 aa25.83■■□□□ 1.73
VPS28-209ENST00000528142 DDX54Q8TDD1 881 aaKnown RBP25.83■■□□□ 1.73
VPS28-209ENST00000528142 NWD2Q9ULI1 1742 aa25.82■■□□□ 1.72
VPS28-209ENST00000528142 C5P01031 1676 aa25.82■■□□□ 1.72
VPS28-209ENST00000528142 SPATA31A6Q5VVP1 1343 aa25.82■■□□□ 1.72
VPS28-209ENST00000528142 UBTFL1P0CB47 393 aaPredicted RBP25.81■■□□□ 1.72
VPS28-209ENST00000528142 USP16Q9Y5T5 823 aa25.81■■□□□ 1.72
VPS28-209ENST00000528142 LRRFIP2Q9Y608 721 aaKnown RBP25.81■■□□□ 1.72
VPS28-209ENST00000528142 MAP3K2Q9Y2U5 619 aa25.81■■□□□ 1.72
VPS28-209ENST00000528142 DISP2A7MBM2 1401 aa25.8■■□□□ 1.72
VPS28-209ENST00000528142 BMP2KLQ5H9B9 411 aa25.79■■□□□ 1.72
VPS28-209ENST00000528142 BCL9LQ86UU0 1499 aa25.79■■□□□ 1.72
VPS28-209ENST00000528142 GLI3P10071 1580 aa25.79■■□□□ 1.72
VPS28-209ENST00000528142 LRP10Q7Z4F1 713 aa25.79■■□□□ 1.72
VPS28-209ENST00000528142 C8orf37Q96NL8 207 aa25.79■■□□□ 1.72
VPS28-209ENST00000528142 PNMA6EA0A0J9YXQ4 647 aa25.78■■□□□ 1.72
VPS28-209ENST00000528142 ALDH1L1O75891 902 aa25.78■■□□□ 1.72
VPS28-209ENST00000528142 DDX58O95786 925 aaKnown RBP25.77■■□□□ 1.72
VPS28-209ENST00000528142 PLEKHM2Q8IWE5 1019 aa25.77■■□□□ 1.72
VPS28-209ENST00000528142 NBPF7P0C2Y1 421 aaPredicted RBP25.77■■□□□ 1.72
VPS28-209ENST00000528142 SPATA31A1Q5TZJ5 1347 aa25.76■■□□□ 1.71
VPS28-209ENST00000528142 WNK3Q9BYP7 1800 aa25.76■■□□□ 1.71
VPS28-209ENST00000528142 NOP58Q9Y2X3 529 aaKnown RBP25.76■■□□□ 1.71
VPS28-209ENST00000528142 AIMP1Q12904 312 aaKnown RBP25.74■■□□□ 1.71
VPS28-209ENST00000528142 C16orf71Q8IYS4 520 aaPredicted RBP25.74■■□□□ 1.71
VPS28-209ENST00000528142 FNBP4Q8N3X1 1017 aaPredicted RBP25.74■■□□□ 1.71
VPS28-209ENST00000528142 NGLY1Q96IV0 654 aa25.74■■□□□ 1.71
VPS28-209ENST00000528142 ZBTB47Q9UFB7 747 aaPredicted RBP25.74■■□□□ 1.71
VPS28-209ENST00000528142 MYL6BP14649 208 aa25.74■■□□□ 1.71
VPS28-209ENST00000528142 SSH3Q8TE77 659 aa25.74■■□□□ 1.71
VPS28-209ENST00000528142 XAGE3Q8WTP9 111 aa25.74■■□□□ 1.71
VPS28-209ENST00000528142 DDRGK1Q96HY6 314 aa25.74■■□□□ 1.71
VPS28-209ENST00000528142 SPATA31A5Q5VU36 1347 aa25.73■■□□□ 1.71
VPS28-209ENST00000528142 SPATA31A7Q8IWB4 1347 aa25.73■■□□□ 1.71
VPS28-209ENST00000528142 SMARCA5O60264 1052 aaPredicted RBP25.73■■□□□ 1.71
VPS28-209ENST00000528142 LINS1Q8NG48 757 aa25.73■■□□□ 1.71
VPS28-209ENST00000528142 KCPQ6ZWJ8 1503 aa25.73■■□□□ 1.71
VPS28-209ENST00000528142 TNS2Q63HR2 1409 aa25.73■■□□□ 1.71
VPS28-209ENST00000528142 COPS6Q7L5N1 327 aa25.72■■□□□ 1.71
VPS28-209ENST00000528142 UNC5CLQ8IV45 518 aa25.72■■□□□ 1.71
VPS28-209ENST00000528142 PAPPAQ13219 1627 aa25.72■■□□□ 1.71
VPS28-209ENST00000528142 POLA2Q14181 598 aa25.72■■□□□ 1.71
VPS28-209ENST00000528142 IBTKQ9P2D0 1353 aaPredicted RBP25.71■■□□□ 1.71
VPS28-209ENST00000528142 EXOC6BQ9Y2D4 811 aa25.71■■□□□ 1.71
VPS28-209ENST00000528142 UBR2Q8IWV8 1755 aa25.71■■□□□ 1.71
VPS28-209ENST00000528142 APBB1O00213 710 aa25.7■■□□□ 1.71
VPS28-209ENST00000528142 CWF19L2Q2TBE0 894 aaKnown RBP25.7■■□□□ 1.71
VPS28-209ENST00000528142 OTUD7AQ8TE49 926 aaPredicted RBP25.7■■□□□ 1.71
VPS28-209ENST00000528142 ERBB4Q15303 1308 aa25.7■■□□□ 1.7
VPS28-209ENST00000528142 PPP1R42Q7Z4L9 355 aa25.7■■□□□ 1.7
VPS28-209ENST00000528142 RIC3Q7Z5B4 369 aa25.7■■□□□ 1.7
VPS28-209ENST00000528142 TOGARAM1Q9Y4F4 1720 aa25.7■■□□□ 1.7
VPS28-209ENST00000528142 UTYO14607 1347 aa25.69■■□□□ 1.7
VPS28-209ENST00000528142 GSPT1P15170 499 aaKnown RBP25.68■■□□□ 1.7
VPS28-209ENST00000528142 TBC1D32Q96NH3 1257 aa25.68■■□□□ 1.7
VPS28-209ENST00000528142 UPF2Q9HAU5 1272 aaKnown RBP25.68■■□□□ 1.7
VPS28-209ENST00000528142 TMOD3Q9NYL9 352 aa25.68■■□□□ 1.7
VPS28-209ENST00000528142 LAMB4A4D0S4 1761 aa25.68■■□□□ 1.7
VPS28-209ENST00000528142 IGKV5-2P06315 115 aa25.67■■□□□ 1.7
VPS28-209ENST00000528142 PIP4K2AP48426 406 aaPredicted RBP25.67■■□□□ 1.7
VPS28-209ENST00000528142 METTL22Q9BUU2 404 aaPredicted RBP25.67■■□□□ 1.7
VPS28-209ENST00000528142 C9orf78Q9NZ63 289 aaPredicted RBP25.67■■□□□ 1.7
VPS28-209ENST00000528142 MTX1Q13505 466 aa25.67■■□□□ 1.7
VPS28-209ENST00000528142 TTC22Q5TAA0 569 aa25.67■■□□□ 1.7
VPS28-209ENST00000528142 ANKRD13DQ6ZTN6 518 aa25.67■■□□□ 1.7
VPS28-209ENST00000528142 NBPF26B4DH59 902 aa25.66■■□□□ 1.7
VPS28-209ENST00000528142 NBPF14Q5TI25 921 aa25.66■■□□□ 1.7
VPS28-209ENST00000528142 NBPF10Q6P3W6 841 aaKnown RBP25.66■■□□□ 1.7
VPS28-209ENST00000528142 NBPF15Q8N660 670 aa25.66■■□□□ 1.7
VPS28-209ENST00000528142 LRRCC1Q9C099 1032 aa25.66■■□□□ 1.7
VPS28-209ENST00000528142 VPS72Q15906 364 aa25.65■■□□□ 1.7
VPS28-209ENST00000528142 PIGBQ92521 554 aa25.65■■□□□ 1.7
VPS28-209ENST00000528142 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.65■■□□□ 1.7
VPS28-209ENST00000528142 HDAC5Q9UQL6 1122 aa25.65■■□□□ 1.7
VPS28-209ENST00000528142 GRM8O00222 908 aa25.65■■□□□ 1.7
VPS28-209ENST00000528142 EXOC5O00471 708 aa25.65■■□□□ 1.7
VPS28-209ENST00000528142 SRGAP3O43295 1099 aa25.65■■□□□ 1.7
VPS28-209ENST00000528142 PTCD1O75127 700 aaKnown RBP25.65■■□□□ 1.7
VPS28-209ENST00000528142 USP21Q9UK80 565 aa25.65■■□□□ 1.7
VPS28-209ENST00000528142 THRAP3Q9Y2W1 955 aaKnown RBP25.65■■□□□ 1.7
VPS28-209ENST00000528142 OSBPL3Q9H4L5 887 aa25.64■■□□□ 1.7
VPS28-209ENST00000528142 CCDC9Q9Y3X0 531 aaKnown RBP25.64■■□□□ 1.7
VPS28-209ENST00000528142 SALL3Q9BXA9 1300 aa25.63■■□□□ 1.69
VPS28-209ENST00000528142 NEURL1BA8MQ27 555 aa25.63■■□□□ 1.69
VPS28-209ENST00000528142 NEXNQ0ZGT2 675 aa25.63■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms