RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 C1orf141Q5JVX7 400 aa14.39□□□□□ -0.11
CPSF1-203ENST00000527916 TTLL6Q8N841 843 aa14.38□□□□□ -0.11
CPSF1-203ENST00000527916 NFATC2IPQ8NCF5 419 aa14.37□□□□□ -0.11
CPSF1-203ENST00000527916 TNNT2P45379 298 aaPredicted RBP14.36□□□□□ -0.11
CPSF1-203ENST00000527916 USPL1Q5W0Q7 1092 aa14.36□□□□□ -0.11
CPSF1-203ENST00000527916 INTS5Q6P9B9 1019 aaKnown RBP14.36□□□□□ -0.11
CPSF1-203ENST00000527916 CREBZFQ9NS37 354 aa14.36□□□□□ -0.11
CPSF1-203ENST00000527916 H0YIN7 160 aa14.35□□□□□ -0.11
CPSF1-203ENST00000527916 CCDC88AQ3V6T2 1871 aa14.35□□□□□ -0.11
CPSF1-203ENST00000527916 NFIXQ14938 502 aa14.34□□□□□ -0.11
CPSF1-203ENST00000527916 C2CD5Q86YS7 1000 aa14.34□□□□□ -0.11
CPSF1-203ENST00000527916 MKRN1Q9UHC7 482 aaKnown RBP14.34□□□□□ -0.11
CPSF1-203ENST00000527916 NARFQ9UHQ1 456 aa14.34□□□□□ -0.11
CPSF1-203ENST00000527916 SERPINB2P05120 415 aa14.33□□□□□ -0.12
CPSF1-203ENST00000527916 CHADLQ6NUI6 762 aa14.33□□□□□ -0.12
CPSF1-203ENST00000527916 AIDAQ96BJ3 306 aa14.33□□□□□ -0.12
CPSF1-203ENST00000527916 PRDM10Q9NQV6 1147 aa14.33□□□□□ -0.12
CPSF1-203ENST00000527916 KNSTRNQ9Y448 316 aa14.33□□□□□ -0.12
CPSF1-203ENST00000527916 SOS1Q07889 1333 aaPredicted RBP14.33□□□□□ -0.12
CPSF1-203ENST00000527916 TIAM2Q8IVF5 1701 aa14.32□□□□□ -0.12
CPSF1-203ENST00000527916 POTECB2RU33 542 aa14.32□□□□□ -0.12
CPSF1-203ENST00000527916 NFKBIEO00221 500 aa14.32□□□□□ -0.12
CPSF1-203ENST00000527916 ERFEQ4G0M1 354 aa14.32□□□□□ -0.12
CPSF1-203ENST00000527916 PDZRN3Q9UPQ7 1066 aa14.32□□□□□ -0.12
CPSF1-203ENST00000527916 TJP1Q07157 1748 aa14.32□□□□□ -0.12
CPSF1-203ENST00000527916 AFDNP55196 1824 aaKnown RBP14.31□□□□□ -0.12
CPSF1-203ENST00000527916 DNAJC10Q8IXB1 793 aa14.31□□□□□ -0.12
CPSF1-203ENST00000527916 KIF7Q2M1P5 1343 aa14.31□□□□□ -0.12
CPSF1-203ENST00000527916 DLEC1Q9Y238 1755 aa14.31□□□□□ -0.12
CPSF1-203ENST00000527916 FOXN1O15353 648 aa14.3□□□□□ -0.12
CPSF1-203ENST00000527916 CTCFP49711 727 aaPredicted RBP14.3□□□□□ -0.12
CPSF1-203ENST00000527916 MORC1Q86VD1 984 aa14.3□□□□□ -0.12
CPSF1-203ENST00000527916 COL15A1P39059 1388 aa14.3□□□□□ -0.12
CPSF1-203ENST00000527916 ADAMTS7Q9UKP4 1686 aa14.3□□□□□ -0.12
CPSF1-203ENST00000527916 SLC34A2O95436 690 aa14.29□□□□□ -0.12
CPSF1-203ENST00000527916 CYP19A1P11511 503 aaPredicted RBP14.29□□□□□ -0.12
CPSF1-203ENST00000527916 ZNF622Q969S3 477 aaKnown RBP eCLIP14.29□□□□□ -0.124e-8■■□□□ 11.8
CPSF1-203ENST00000527916 CNTNAP1P78357 1384 aa14.29□□□□□ -0.12
CPSF1-203ENST00000527916 NRXN2Q9P2S2 1712 aa14.29□□□□□ -0.12
CPSF1-203ENST00000527916 IQCA1LA6NCM1 817 aa14.28□□□□□ -0.12
CPSF1-203ENST00000527916 PDE6BP35913 854 aa14.28□□□□□ -0.12
CPSF1-203ENST00000527916 AMER1Q5JTC6 1135 aaPredicted RBP14.28□□□□□ -0.12
CPSF1-203ENST00000527916 SULT6B1Q6IMI4 303 aa14.28□□□□□ -0.12
CPSF1-203ENST00000527916 AEBP1Q8IUX7 1158 aa14.28□□□□□ -0.12
CPSF1-203ENST00000527916 SLC52A2Q9HAB3 445 aa14.28□□□□□ -0.12
CPSF1-203ENST00000527916 DICER1Q9UPY3 1922 aaKnown RBP14.27□□□□□ -0.12
CPSF1-203ENST00000527916 PER1O15534 1290 aaPredicted RBP14.27□□□□□ -0.13
CPSF1-203ENST00000527916 C21orf2O43822 256 aa14.27□□□□□ -0.13
CPSF1-203ENST00000527916 AKAP4Q5JQC9 854 aa14.27□□□□□ -0.13
CPSF1-203ENST00000527916 TAOK3Q9H2K8 898 aa14.27□□□□□ -0.13
CPSF1-203ENST00000527916 ZBTB1Q9Y2K1 713 aa14.27□□□□□ -0.13
CPSF1-203ENST00000527916 SCN11AQ9UI33 1791 aa14.27□□□□□ -0.13
CPSF1-203ENST00000527916 LTBP3Q9NS15 1303 aa14.26□□□□□ -0.13
CPSF1-203ENST00000527916 A0A087WZG4 1122 aa14.26□□□□□ -0.13
CPSF1-203ENST00000527916 BICDL1Q6ZP65 573 aa14.26□□□□□ -0.13
CPSF1-203ENST00000527916 LDHDQ86WU2 507 aa14.26□□□□□ -0.13
CPSF1-203ENST00000527916 VSIG10Q8N0Z9 540 aa14.26□□□□□ -0.13
CPSF1-203ENST00000527916 BRIP1Q9BX63 1249 aa14.26□□□□□ -0.13
CPSF1-203ENST00000527916 BCL2L12Q9HB09 334 aa14.26□□□□□ -0.13
CPSF1-203ENST00000527916 ZNF219Q9P2Y4 722 aaPredicted RBP14.26□□□□□ -0.13
CPSF1-203ENST00000527916 TMEM88BA6NKF7 163 aa14.25□□□□□ -0.13
CPSF1-203ENST00000527916 DDNO94850 711 aaPredicted RBP14.25□□□□□ -0.13
CPSF1-203ENST00000527916 SOGA3Q5TF21 947 aa14.25□□□□□ -0.13
CPSF1-203ENST00000527916 CARMIL3Q8ND23 1372 aa14.24□□□□□ -0.13
CPSF1-203ENST00000527916 STARD3NLO95772 234 aa14.24□□□□□ -0.13
CPSF1-203ENST00000527916 POTEIP0CG38 1075 aa14.24□□□□□ -0.13
CPSF1-203ENST00000527916 POTEJP0CG39 1038 aa14.24□□□□□ -0.13
CPSF1-203ENST00000527916 CANXP27824 592 aaKnown RBP14.24□□□□□ -0.13
CPSF1-203ENST00000527916 VEGFBP49765 207 aa14.24□□□□□ -0.13
CPSF1-203ENST00000527916 SLC39A6Q13433 755 aa14.24□□□□□ -0.13
CPSF1-203ENST00000527916 CNKSR1Q969H4 720 aa14.24□□□□□ -0.13
CPSF1-203ENST00000527916 FER1L6Q2WGJ9 1857 aa14.24□□□□□ -0.13
CPSF1-203ENST00000527916 PASKQ96RG2 1323 aa14.23□□□□□ -0.13
CPSF1-203ENST00000527916 NPHP1O15259 732 aa14.23□□□□□ -0.13
CPSF1-203ENST00000527916 LGR6Q9HBX8 967 aa14.23□□□□□ -0.13
CPSF1-203ENST00000527916 NPC1L1Q9UHC9 1359 aa14.22□□□□□ -0.13
CPSF1-203ENST00000527916 RNMTO43148 476 aaKnown RBP14.22□□□□□ -0.13
CPSF1-203ENST00000527916 IL13P35225 146 aa14.22□□□□□ -0.13
CPSF1-203ENST00000527916 LBX1P52954 281 aa14.22□□□□□ -0.13
CPSF1-203ENST00000527916 NPM2Q86SE8 214 aaKnown RBP14.22□□□□□ -0.13
CPSF1-203ENST00000527916 WBP1LQ9NX94 342 aa14.22□□□□□ -0.13
CPSF1-203ENST00000527916 EIF5P55010 431 aaKnown RBP14.21□□□□□ -0.13
CPSF1-203ENST00000527916 TBC1D9BQ66K14 1250 aa14.21□□□□□ -0.13
CPSF1-203ENST00000527916 STYK1Q6J9G0 422 aa14.21□□□□□ -0.13
CPSF1-203ENST00000527916 PRR5LQ6MZQ0 368 aa14.21□□□□□ -0.13
CPSF1-203ENST00000527916 L3MBTL3Q96JM7 780 aaPredicted RBP14.21□□□□□ -0.13
CPSF1-203ENST00000527916 TAF1DQ9H5J8 278 aaPredicted RBP14.21□□□□□ -0.13
CPSF1-203ENST00000527916 SCN4AP35499 1836 aa14.2□□□□□ -0.14
CPSF1-203ENST00000527916 MAP2K1Q02750 393 aaPredicted RBP14.2□□□□□ -0.14
CPSF1-203ENST00000527916 EAPPQ56P03 285 aaPredicted RBP14.2□□□□□ -0.14
CPSF1-203ENST00000527916 TTC5Q8N0Z6 440 aa14.2□□□□□ -0.14
CPSF1-203ENST00000527916 CNBD1Q8NA66 436 aa14.2□□□□□ -0.14
CPSF1-203ENST00000527916 ABHD8Q96I13 439 aa14.2□□□□□ -0.14
CPSF1-203ENST00000527916 SETDB2Q96T68 719 aa14.2□□□□□ -0.14
CPSF1-203ENST00000527916 CLEC11AQ9Y240 323 aa14.2□□□□□ -0.14
CPSF1-203ENST00000527916 MRC1P22897 1456 aa14.19□□□□□ -0.14
CPSF1-203ENST00000527916 ANKRD31Q8N7Z5 1873 aa14.19□□□□□ -0.14
CPSF1-203ENST00000527916 ITGBL1O95965 494 aaPredicted RBP14.19□□□□□ -0.14
CPSF1-203ENST00000527916 ST5P78524 1137 aa14.19□□□□□ -0.14
CPSF1-203ENST00000527916 DEFB115Q30KQ5 88 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms