RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 HOOK1Q9UJC3 728 aaKnown RBP13.83□□□□□ -0.2
SYNPO-204ENST00000519664 SART3Q15020 963 aaKnown RBP13.83□□□□□ -0.2
SYNPO-204ENST00000519664 AMOTQ4VCS5 1084 aa13.82□□□□□ -0.2
SYNPO-204ENST00000519664 OLFM4Q6UX06 510 aa13.82□□□□□ -0.2
SYNPO-204ENST00000519664 AMOTL1Q8IY63 956 aa13.82□□□□□ -0.2
SYNPO-204ENST00000519664 MAP3K19Q56UN5 1328 aa13.82□□□□□ -0.2
SYNPO-204ENST00000519664 CLCN1P35523 988 aa13.82□□□□□ -0.2
SYNPO-204ENST00000519664 CWF19L2Q2TBE0 894 aaKnown RBP13.82□□□□□ -0.2
SYNPO-204ENST00000519664 UQCRHLA0A096LP55 91 aa13.82□□□□□ -0.2
SYNPO-204ENST00000519664 UQCRHP07919 91 aa13.82□□□□□ -0.2
SYNPO-204ENST00000519664 IFIT1P09914 478 aaKnown RBP13.82□□□□□ -0.2
SYNPO-204ENST00000519664 KRT28Q7Z3Y7 464 aa13.82□□□□□ -0.2
SYNPO-204ENST00000519664 MNS1Q8NEH6 495 aa13.82□□□□□ -0.2
SYNPO-204ENST00000519664 ANKRD24Q8TF21 1146 aa13.82□□□□□ -0.2
SYNPO-204ENST00000519664 HAND2P61296 217 aa13.81□□□□□ -0.2
SYNPO-204ENST00000519664 DDX46Q7L014 1031 aaKnown RBP13.81□□□□□ -0.2
SYNPO-204ENST00000519664 ZNF518AQ6AHZ1 1483 aa13.81□□□□□ -0.2
SYNPO-204ENST00000519664 GOLIM4O00461 696 aa13.81□□□□□ -0.2
SYNPO-204ENST00000519664 GJB2P29033 226 aa13.81□□□□□ -0.2
SYNPO-204ENST00000519664 METTL24Q5JXM2 366 aa13.81□□□□□ -0.2
SYNPO-204ENST00000519664 CABLES1Q8TDN4 633 aa13.81□□□□□ -0.2
SYNPO-204ENST00000519664 ABCA5Q8WWZ7 1642 aa13.81□□□□□ -0.2
SYNPO-204ENST00000519664 MAP3K11Q16584 847 aa13.81□□□□□ -0.2
SYNPO-204ENST00000519664 ESYT1Q9BSJ8 1104 aa13.81□□□□□ -0.2
SYNPO-204ENST00000519664 MAGI2Q86UL8 1455 aa13.81□□□□□ -0.2
SYNPO-204ENST00000519664 STX6O43752 255 aa13.81□□□□□ -0.2
SYNPO-204ENST00000519664 CPA1P15085 419 aa13.81□□□□□ -0.2
SYNPO-204ENST00000519664 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.81□□□□□ -0.2
SYNPO-204ENST00000519664 KLHL40Q2TBA0 621 aa13.8□□□□□ -0.2
SYNPO-204ENST00000519664 COPS6Q7L5N1 327 aa13.8□□□□□ -0.2
SYNPO-204ENST00000519664 HCLS1P14317 486 aaPredicted RBP13.8□□□□□ -0.2
SYNPO-204ENST00000519664 IPO7O95373 1038 aaKnown RBP13.8□□□□□ -0.2
SYNPO-204ENST00000519664 SERPINC1P01008 464 aa13.8□□□□□ -0.2
SYNPO-204ENST00000519664 KRT32Q14532 448 aa13.8□□□□□ -0.2
SYNPO-204ENST00000519664 HYPKQ9NX55 129 aa13.8□□□□□ -0.2
SYNPO-204ENST00000519664 RIMS2Q9UQ26 1411 aa13.8□□□□□ -0.2
SYNPO-204ENST00000519664 ATP8B2P98198 1209 aa13.8□□□□□ -0.2
SYNPO-204ENST00000519664 ANKRD20A12PQ8NF67 263 aa13.8□□□□□ -0.2
SYNPO-204ENST00000519664 ZSCAN23Q3MJ62 389 aa13.79□□□□□ -0.2
SYNPO-204ENST00000519664 GIMAP6Q6P9H5 292 aa13.79□□□□□ -0.2
SYNPO-204ENST00000519664 GOLGA6L1Q8N7Z2 621 aa13.79□□□□□ -0.2
SYNPO-204ENST00000519664 ZNF830Q96NB3 372 aaPredicted RBP13.79□□□□□ -0.2
SYNPO-204ENST00000519664 CFAP45Q9UL16 551 aa13.79□□□□□ -0.2
SYNPO-204ENST00000519664 IL13P35225 146 aa13.79□□□□□ -0.2
SYNPO-204ENST00000519664 PTPRTO14522 1441 aa13.79□□□□□ -0.2
SYNPO-204ENST00000519664 TDO2P48775 406 aa13.79□□□□□ -0.2
SYNPO-204ENST00000519664 XAGE3Q8WTP9 111 aa13.79□□□□□ -0.2
SYNPO-204ENST00000519664 TNRQ92752 1358 aa13.79□□□□□ -0.2
SYNPO-204ENST00000519664 LRP2BPQ9P2M1 347 aa13.78□□□□□ -0.2
SYNPO-204ENST00000519664 NPATQ14207 1427 aa13.78□□□□□ -0.2
SYNPO-204ENST00000519664 POGZQ7Z3K3 1410 aa13.78□□□□□ -0.2
SYNPO-204ENST00000519664 KCNA6P17658 529 aa13.78□□□□□ -0.2
SYNPO-204ENST00000519664 YTHDC2Q9H6S0 1430 aaKnown RBP13.78□□□□□ -0.2
SYNPO-204ENST00000519664 PIK3R4Q99570 1358 aa13.78□□□□□ -0.2
SYNPO-204ENST00000519664 XBP1P17861 261 aa13.78□□□□□ -0.2
SYNPO-204ENST00000519664 ANKRD13DQ6ZTN6 518 aa13.78□□□□□ -0.2
SYNPO-204ENST00000519664 MBD5Q9P267 1494 aa13.77□□□□□ -0.2
SYNPO-204ENST00000519664 EVI5LQ96CN4 794 aa13.77□□□□□ -0.2
SYNPO-204ENST00000519664 CNPY2Q9Y2B0 182 aa13.77□□□□□ -0.2
SYNPO-204ENST00000519664 ZMYM4Q5VZL5 1548 aa13.77□□□□□ -0.2
SYNPO-204ENST00000519664 CCDC183Q5T5S1 534 aa13.77□□□□□ -0.21
SYNPO-204ENST00000519664 U3KPZ7 1027 aaPredicted RBP13.77□□□□□ -0.21
SYNPO-204ENST00000519664 UHRF1BP1LA0JNW5 1464 aa13.77□□□□□ -0.21
SYNPO-204ENST00000519664 CCDC66A2RUB6 948 aa13.77□□□□□ -0.21
SYNPO-204ENST00000519664 PRIM1P49642 420 aaKnown RBP13.77□□□□□ -0.21
SYNPO-204ENST00000519664 CCDC69A6NI79 296 aa13.76□□□□□ -0.21
SYNPO-204ENST00000519664 HMGN5P82970 282 aaKnown RBP13.76□□□□□ -0.21
SYNPO-204ENST00000519664 IMMTQ16891 758 aaKnown RBP13.76□□□□□ -0.21
SYNPO-204ENST00000519664 TRIM22Q8IYM9 498 aa13.76□□□□□ -0.21
SYNPO-204ENST00000519664 SNX21Q969T3 373 aa13.76□□□□□ -0.21
SYNPO-204ENST00000519664 RAI14Q9P0K7 980 aa13.76□□□□□ -0.21
SYNPO-204ENST00000519664 NPC1L1Q9UHC9 1359 aa13.76□□□□□ -0.21
SYNPO-204ENST00000519664 AIDAQ96BJ3 306 aa13.76□□□□□ -0.21
SYNPO-204ENST00000519664 PUS7Q96PZ0 661 aaKnown RBP13.76□□□□□ -0.21
SYNPO-204ENST00000519664 USP26Q9BXU7 913 aa13.76□□□□□ -0.21
SYNPO-204ENST00000519664 CTNNA3Q9UI47 895 aa13.76□□□□□ -0.21
SYNPO-204ENST00000519664 MINDY4BA8MYZ0 360 aa13.76□□□□□ -0.21
SYNPO-204ENST00000519664 CCDC144CPQ8IYA2 1237 aa13.76□□□□□ -0.21
SYNPO-204ENST00000519664 NFATC2IPQ8NCF5 419 aa13.76□□□□□ -0.21
SYNPO-204ENST00000519664 SH2B1Q9NRF2 756 aaPredicted RBP13.76□□□□□ -0.21
SYNPO-204ENST00000519664 BLMP54132 1417 aaPredicted RBP13.76□□□□□ -0.21
SYNPO-204ENST00000519664 BIN1O00499 593 aa13.76□□□□□ -0.21
SYNPO-204ENST00000519664 TAF3Q5VWG9 929 aa13.76□□□□□ -0.21
SYNPO-204ENST00000519664 BRF1Q92994 677 aa13.76□□□□□ -0.21
SYNPO-204ENST00000519664 TMOD3Q9NYL9 352 aa13.76□□□□□ -0.21
SYNPO-204ENST00000519664 ISM2Q6H9L7 571 aa13.75□□□□□ -0.21
SYNPO-204ENST00000519664 NACAP1Q9BZK3 213 aa13.75□□□□□ -0.21
SYNPO-204ENST00000519664 POLR3DP05423 398 aaPredicted RBP13.75□□□□□ -0.21
SYNPO-204ENST00000519664 BRMS1Q9HCU9 246 aa13.75□□□□□ -0.21
SYNPO-204ENST00000519664 IFIT5Q13325 482 aaKnown RBP13.75□□□□□ -0.21
SYNPO-204ENST00000519664 JMYQ8N9B5 988 aa13.75□□□□□ -0.21
SYNPO-204ENST00000519664 SCAND2PQ9GZW5 306 aaPredicted RBP13.75□□□□□ -0.21
SYNPO-204ENST00000519664 RBM8AQ9Y5S9 174 aaKnown RBP13.75□□□□□ -0.21
SYNPO-204ENST00000519664 EIF2AK4Q9P2K8 1649 aaKnown RBP13.75□□□□□ -0.21
SYNPO-204ENST00000519664 USP48Q86UV5 1035 aa13.74□□□□□ -0.21
SYNPO-204ENST00000519664 CEP57L1Q8IYX8 460 aa13.74□□□□□ -0.21
SYNPO-204ENST00000519664 KLHDC4Q8TBB5 520 aa13.74□□□□□ -0.21
SYNPO-204ENST00000519664 MSH6P52701 1360 aa13.74□□□□□ -0.21
SYNPO-204ENST00000519664 PNMA6EA0A0J9YXQ4 647 aa13.74□□□□□ -0.21
SYNPO-204ENST00000519664 STARD3NLO95772 234 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms