RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 KCNA6P17658 529 aa11.63□□□□□ -0.55
VCAN-210ENST00000513960 FKBP5Q13451 457 aaPredicted RBP11.63□□□□□ -0.55
VCAN-210ENST00000513960 NOLC1Q14978 699 aaKnown RBP eCLIP11.63□□□□□ -0.55
VCAN-210ENST00000513960 CCDC30Q5VVM6 783 aa11.63□□□□□ -0.55
VCAN-210ENST00000513960 G2E3Q7L622 706 aa11.63□□□□□ -0.55
VCAN-210ENST00000513960 NCOA3Q9Y6Q9 1424 aa11.63□□□□□ -0.55
VCAN-210ENST00000513960 HTATSF1O43719 755 aaKnown RBP11.63□□□□□ -0.55
VCAN-210ENST00000513960 ADCY5O95622 1261 aa11.63□□□□□ -0.55
VCAN-210ENST00000513960 HMGN5P82970 282 aaKnown RBP11.63□□□□□ -0.55
VCAN-210ENST00000513960 ZNF592Q92610 1267 aa11.63□□□□□ -0.55
VCAN-210ENST00000513960 USP26Q9BXU7 913 aa11.63□□□□□ -0.55
VCAN-210ENST00000513960 TOPAZ1Q8N9V7 1692 aa11.63□□□□□ -0.55
VCAN-210ENST00000513960 MCM5P33992 734 aa11.63□□□□□ -0.55
VCAN-210ENST00000513960 NECTIN2Q92692 538 aa11.63□□□□□ -0.55
VCAN-210ENST00000513960 GNAI2P04899 355 aa11.62□□□□□ -0.55
VCAN-210ENST00000513960 ERC2O15083 957 aa11.62□□□□□ -0.55
VCAN-210ENST00000513960 HOXC9P31274 260 aa11.62□□□□□ -0.55
VCAN-210ENST00000513960 TMX3Q96JJ7 454 aa11.62□□□□□ -0.55
VCAN-210ENST00000513960 KDRP35968 1356 aa11.62□□□□□ -0.55
VCAN-210ENST00000513960 PEAK1Q9H792 1746 aa11.62□□□□□ -0.55
VCAN-210ENST00000513960 RGS12O14924 1447 aa11.62□□□□□ -0.55
VCAN-210ENST00000513960 GADD45BO75293 160 aaPredicted RBP11.61□□□□□ -0.55
VCAN-210ENST00000513960 ATP10DQ9P241 1426 aa11.61□□□□□ -0.55
VCAN-210ENST00000513960 SLIT1O75093 1534 aa11.61□□□□□ -0.55
VCAN-210ENST00000513960 ARHGAP23Q9P227 1491 aa11.61□□□□□ -0.55
VCAN-210ENST00000513960 AK9Q5TCS8 1911 aa11.61□□□□□ -0.55
VCAN-210ENST00000513960 GNAI3P08754 354 aa11.61□□□□□ -0.55
VCAN-210ENST00000513960 CGNQ9P2M7 1197 aaKnown RBP11.61□□□□□ -0.55
VCAN-210ENST00000513960 DIP2AQ14689 1571 aa11.61□□□□□ -0.55
VCAN-210ENST00000513960 FLIIQ13045 1269 aa11.6□□□□□ -0.55
VCAN-210ENST00000513960 MYRIPQ8NFW9 859 aa11.6□□□□□ -0.55
VCAN-210ENST00000513960 PDLIM2Q96JY6 352 aa11.6□□□□□ -0.55
VCAN-210ENST00000513960 TAF7Q15545 349 aaPredicted RBP11.6□□□□□ -0.55
VCAN-210ENST00000513960 NALCNQ8IZF0 1738 aa11.6□□□□□ -0.55
VCAN-210ENST00000513960 U2AF2P26368 475 aaKnown RBP eCLIP11.6□□□□□ -0.55
VCAN-210ENST00000513960 BBXQ8WY36 941 aaPredicted RBP11.6□□□□□ -0.55
VCAN-210ENST00000513960 ANKARQ7Z5J8 1434 aa11.59□□□□□ -0.55
VCAN-210ENST00000513960 PHF8Q9UPP1 1060 aa11.59□□□□□ -0.55
VCAN-210ENST00000513960 EXOC6BQ9Y2D4 811 aa11.59□□□□□ -0.55
VCAN-210ENST00000513960 IBTKQ9P2D0 1353 aaPredicted RBP11.59□□□□□ -0.55
VCAN-210ENST00000513960 USP48Q86UV5 1035 aa11.59□□□□□ -0.55
VCAN-210ENST00000513960 ZDHHC9Q9Y397 364 aa11.59□□□□□ -0.55
VCAN-210ENST00000513960 MAP4K4O95819 1239 aaPredicted RBP11.58□□□□□ -0.56
VCAN-210ENST00000513960 RGPD1P0DJD0 1748 aa11.58□□□□□ -0.56
VCAN-210ENST00000513960 USHBP1Q8N6Y0 703 aa11.58□□□□□ -0.56
VCAN-210ENST00000513960 DIAPH3Q9NSV4 1193 aa11.58□□□□□ -0.56
VCAN-210ENST00000513960 MAP3K5Q99683 1374 aa11.58□□□□□ -0.56
VCAN-210ENST00000513960 CEP170BQ9Y4F5 1589 aaPredicted RBP11.58□□□□□ -0.56
VCAN-210ENST00000513960 TRHP20396 242 aaPredicted RBP11.58□□□□□ -0.56
VCAN-210ENST00000513960 DMTNQ08495 405 aa11.58□□□□□ -0.56
VCAN-210ENST00000513960 GIMAP6Q6P9H5 292 aa11.58□□□□□ -0.56
VCAN-210ENST00000513960 VPS37CA5D8V6 355 aaPredicted RBP11.57□□□□□ -0.56
VCAN-210ENST00000513960 HDGFL1Q5TGJ6 251 aa11.57□□□□□ -0.56
VCAN-210ENST00000513960 IL17REQ8NFR9 667 aa11.57□□□□□ -0.56
VCAN-210ENST00000513960 BCL2L12Q9HB09 334 aa11.57□□□□□ -0.56
VCAN-210ENST00000513960 GOLGA6L4A6NEF3 574 aa11.57□□□□□ -0.56
VCAN-210ENST00000513960 NPHP1O15259 732 aa11.57□□□□□ -0.56
VCAN-210ENST00000513960 PSME1Q06323 249 aa11.57□□□□□ -0.56
VCAN-210ENST00000513960 ATP2B3Q16720 1220 aa11.57□□□□□ -0.56
VCAN-210ENST00000513960 PRIMPOLQ96LW4 560 aa11.57□□□□□ -0.56
VCAN-210ENST00000513960 LRRCC1Q9C099 1032 aa11.57□□□□□ -0.56
VCAN-210ENST00000513960 CNPY2Q9Y2B0 182 aa11.57□□□□□ -0.56
VCAN-210ENST00000513960 PDE1AP54750 535 aa11.57□□□□□ -0.56
VCAN-210ENST00000513960 ANKLE2Q86XL3 938 aa11.57□□□□□ -0.56
VCAN-210ENST00000513960 SOS1Q07889 1333 aaPredicted RBP11.57□□□□□ -0.56
VCAN-210ENST00000513960 GOLGA6L6A8MZA4 724 aa11.56□□□□□ -0.56
VCAN-210ENST00000513960 BABAM1Q9NWV8 329 aa11.56□□□□□ -0.56
VCAN-210ENST00000513960 C16orf45Q96MC5 204 aaPredicted RBP11.56□□□□□ -0.56
VCAN-210ENST00000513960 EIF2S2P20042 333 aaKnown RBP11.56□□□□□ -0.56
VCAN-210ENST00000513960 PIBF1Q8WXW3 757 aa11.56□□□□□ -0.56
VCAN-210ENST00000513960 UBTFL1P0CB47 393 aaPredicted RBP11.55□□□□□ -0.56
VCAN-210ENST00000513960 ESCO1Q5FWF5 840 aa11.55□□□□□ -0.56
VCAN-210ENST00000513960 RBM33Q96EV2 1170 aaKnown RBP11.55□□□□□ -0.56
VCAN-210ENST00000513960 CHMP4AQ9BY43 222 aa11.55□□□□□ -0.56
VCAN-210ENST00000513960 RGPD8O14715 1765 aaPredicted RBP11.55□□□□□ -0.56
VCAN-210ENST00000513960 FMN2Q9NZ56 1722 aa11.55□□□□□ -0.56
VCAN-210ENST00000513960 RIOK3O14730 519 aaKnown RBP11.55□□□□□ -0.56
VCAN-210ENST00000513960 DDX54Q8TDD1 881 aaKnown RBP11.55□□□□□ -0.56
VCAN-210ENST00000513960 RIMS1Q86UR5 1692 aaKnown RBP11.55□□□□□ -0.56
VCAN-210ENST00000513960 ATP8B2P98198 1209 aa11.55□□□□□ -0.56
VCAN-210ENST00000513960 ERICH4A6NGS2 130 aa11.54□□□□□ -0.56
VCAN-210ENST00000513960 CAMK4Q16566 473 aa11.54□□□□□ -0.56
VCAN-210ENST00000513960 LRRFIP2Q9Y608 721 aaKnown RBP11.54□□□□□ -0.56
VCAN-210ENST00000513960 PIK3C2AO00443 1686 aa11.54□□□□□ -0.56
VCAN-210ENST00000513960 IP6K1Q92551 441 aa11.54□□□□□ -0.56
VCAN-210ENST00000513960 OSBPL3Q9H4L5 887 aa11.54□□□□□ -0.56
VCAN-210ENST00000513960 SMC3Q9UQE7 1217 aa11.54□□□□□ -0.56
VCAN-210ENST00000513960 WDR33Q9C0J8 1336 aaKnown RBP11.54□□□□□ -0.56
VCAN-210ENST00000513960 MX1P20591 662 aa11.54□□□□□ -0.56
VCAN-210ENST00000513960 TEFQ10587 303 aa11.54□□□□□ -0.56
VCAN-210ENST00000513960 CCDC183Q5T5S1 534 aa11.54□□□□□ -0.56
VCAN-210ENST00000513960 VGLL3A8MV65 326 aa11.53□□□□□ -0.56
VCAN-210ENST00000513960 CYP2E1P05181 493 aaPredicted RBP11.53□□□□□ -0.56
VCAN-210ENST00000513960 ZSCAN20P17040 1043 aaPredicted RBP11.53□□□□□ -0.56
VCAN-210ENST00000513960 KCNJ4P48050 445 aa11.53□□□□□ -0.56
VCAN-210ENST00000513960 LMOD2Q6P5Q4 547 aa11.53□□□□□ -0.56
VCAN-210ENST00000513960 CLEC17AQ6ZS10 378 aa11.53□□□□□ -0.56
VCAN-210ENST00000513960 TRERF1Q96PN7 1200 aa11.53□□□□□ -0.56
VCAN-210ENST00000513960 PALD1Q9ULE6 856 aa11.53□□□□□ -0.56
VCAN-210ENST00000513960 FER1L4A9Z1Z3 1794 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms