RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 HMGB1P09429 215 aaKnown RBP4.99□□□□□ -1.61
VCAN-209ENST00000513016 GRM1Q13255 1194 aa4.99□□□□□ -1.61
VCAN-209ENST00000513016 STK11IPQ8N1F8 1099 aa4.99□□□□□ -1.61
VCAN-209ENST00000513016 FERMT2Q96AC1 680 aa4.99□□□□□ -1.61
VCAN-209ENST00000513016 ACSBG1Q96GR2 724 aa4.99□□□□□ -1.61
VCAN-209ENST00000513016 UTP14AQ9BVJ6 771 aaKnown RBP4.99□□□□□ -1.61
VCAN-209ENST00000513016 ANKRD2Q9GZV1 360 aa4.99□□□□□ -1.61
VCAN-209ENST00000513016 PDE4AP27815 886 aa4.99□□□□□ -1.61
VCAN-209ENST00000513016 KIF5BP33176 963 aa4.99□□□□□ -1.61
VCAN-209ENST00000513016 ALDH1L2Q3SY69 923 aa4.99□□□□□ -1.61
VCAN-209ENST00000513016 STXBP4Q6ZWJ1 553 aa4.99□□□□□ -1.61
VCAN-209ENST00000513016 RUFY1Q96T51 708 aa4.99□□□□□ -1.61
VCAN-209ENST00000513016 ZBTB3Q9H5J0 574 aa4.99□□□□□ -1.61
VCAN-209ENST00000513016 ZNF608Q9ULD9 1512 aaPredicted RBP4.99□□□□□ -1.61
VCAN-209ENST00000513016 AKAP4Q5JQC9 854 aa4.99□□□□□ -1.61
VCAN-209ENST00000513016 CCDC39Q9UFE4 941 aa4.99□□□□□ -1.61
VCAN-209ENST00000513016 NOS1P29475 1434 aa4.98□□□□□ -1.61
VCAN-209ENST00000513016 CCP110O43303 1012 aa4.98□□□□□ -1.61
VCAN-209ENST00000513016 BIN2Q9UBW5 565 aaPredicted RBP4.98□□□□□ -1.61
VCAN-209ENST00000513016 KDM4AO75164 1064 aa4.98□□□□□ -1.61
VCAN-209ENST00000513016 TIAM1Q13009 1591 aa4.98□□□□□ -1.61
VCAN-209ENST00000513016 PTPRCP08575 1304 aa4.98□□□□□ -1.61
VCAN-209ENST00000513016 ERLIN2O94905 339 aa4.98□□□□□ -1.61
VCAN-209ENST00000513016 TSR2Q969E8 191 aaKnown RBP4.98□□□□□ -1.61
VCAN-209ENST00000513016 TANGO6Q9C0B7 1094 aa4.98□□□□□ -1.61
VCAN-209ENST00000513016 USP21Q9UK80 565 aa4.98□□□□□ -1.61
VCAN-209ENST00000513016 ZMYM3Q14202 1370 aa4.98□□□□□ -1.61
VCAN-209ENST00000513016 NEK4P51957 841 aa4.98□□□□□ -1.61
VCAN-209ENST00000513016 ZRSR2Q15696 482 aaKnown RBP4.98□□□□□ -1.61
VCAN-209ENST00000513016 CATIPQ7Z7H3 387 aa4.98□□□□□ -1.61
VCAN-209ENST00000513016 TRPM2O94759 1503 aa4.98□□□□□ -1.61
VCAN-209ENST00000513016 FGFR1OPO95684 399 aaKnown RBP4.98□□□□□ -1.61
VCAN-209ENST00000513016 CEP57L1Q8IYX8 460 aa4.98□□□□□ -1.61
VCAN-209ENST00000513016 PUS7Q96PZ0 661 aaKnown RBP4.98□□□□□ -1.61
VCAN-209ENST00000513016 SH2D4AQ9H788 454 aa4.98□□□□□ -1.61
VCAN-209ENST00000513016 NIP7Q9Y221 180 aaKnown RBP eCLIP4.98□□□□□ -1.61
VCAN-209ENST00000513016 ADGRF5Q8IZF2 1346 aa4.98□□□□□ -1.61
VCAN-209ENST00000513016 ZNF213O14771 459 aa4.98□□□□□ -1.61
VCAN-209ENST00000513016 PPM1FP49593 454 aaPredicted RBP4.98□□□□□ -1.61
VCAN-209ENST00000513016 GPR162Q16538 588 aa4.98□□□□□ -1.61
VCAN-209ENST00000513016 BICRAQ9NZM4 1560 aa4.97□□□□□ -1.61
VCAN-209ENST00000513016 RANBP6O60518 1105 aaKnown RBP4.97□□□□□ -1.61
VCAN-209ENST00000513016 MBD3O95983 291 aa4.97□□□□□ -1.61
VCAN-209ENST00000513016 NCBP1Q09161 790 aaKnown RBP4.97□□□□□ -1.61
VCAN-209ENST00000513016 TSG101Q99816 390 aa4.97□□□□□ -1.61
VCAN-209ENST00000513016 ARHGEF10O15013 1369 aa4.97□□□□□ -1.61
VCAN-209ENST00000513016 ANKRD36BQ8N2N9 1353 aa4.97□□□□□ -1.61
VCAN-209ENST00000513016 ABCC5O15440 1437 aa4.97□□□□□ -1.61
VCAN-209ENST00000513016 KIF4AO95239 1232 aa4.97□□□□□ -1.61
VCAN-209ENST00000513016 MAP3K9P80192 1104 aa4.97□□□□□ -1.61
VCAN-209ENST00000513016 BRDTQ58F21 947 aaPredicted RBP4.97□□□□□ -1.61
VCAN-209ENST00000513016 LRRC27Q9C0I9 530 aa4.97□□□□□ -1.61
VCAN-209ENST00000513016 PCDH11XQ9BZA7 1347 aa4.97□□□□□ -1.61
VCAN-209ENST00000513016 PCDH11YQ9BZA8 1340 aa4.97□□□□□ -1.61
VCAN-209ENST00000513016 MCM10Q7L590 875 aa4.97□□□□□ -1.61
VCAN-209ENST00000513016 PIK3R4Q99570 1358 aa4.97□□□□□ -1.61
VCAN-209ENST00000513016 SCAF11Q99590 1463 aaKnown RBP4.97□□□□□ -1.61
VCAN-209ENST00000513016 H0YIN7 160 aa4.97□□□□□ -1.61
VCAN-209ENST00000513016 GNAQP50148 359 aa4.97□□□□□ -1.61
VCAN-209ENST00000513016 TNPO1Q92973 898 aaKnown RBP4.97□□□□□ -1.61
VCAN-209ENST00000513016 CFAP45Q9UL16 551 aa4.97□□□□□ -1.61
VCAN-209ENST00000513016 DPY19L2Q6NUT2 758 aa4.97□□□□□ -1.61
VCAN-209ENST00000513016 ANKRD13DQ6ZTN6 518 aa4.97□□□□□ -1.61
VCAN-209ENST00000513016 DZIP3Q86Y13 1208 aaKnown RBP4.97□□□□□ -1.61
VCAN-209ENST00000513016 PDILTQ8N807 584 aa4.97□□□□□ -1.61
VCAN-209ENST00000513016 ERCC4Q92889 916 aaPredicted RBP4.97□□□□□ -1.61
VCAN-209ENST00000513016 KAT14Q9H8E8 782 aa4.97□□□□□ -1.61
VCAN-209ENST00000513016 TCIRG1Q13488 830 aa4.97□□□□□ -1.61
VCAN-209ENST00000513016 SPINK5Q9NQ38 1064 aaPredicted RBP4.97□□□□□ -1.61
VCAN-209ENST00000513016 PDRG1Q9NUG6 133 aa4.97□□□□□ -1.61
VCAN-209ENST00000513016 CCNL1Q9UK58 526 aaPredicted RBP4.97□□□□□ -1.61
VCAN-209ENST00000513016 APBA3O96018 575 aa4.96□□□□□ -1.61
VCAN-209ENST00000513016 PARP10Q53GL7 1025 aa4.96□□□□□ -1.61
VCAN-209ENST00000513016 DCAF5Q96JK2 942 aa4.96□□□□□ -1.61
VCAN-209ENST00000513016 BTG4Q9NY30 223 aa4.96□□□□□ -1.61
VCAN-209ENST00000513016 MAST3O60307 1309 aa4.96□□□□□ -1.61
VCAN-209ENST00000513016 ZFYP08048 801 aaPredicted RBP4.96□□□□□ -1.61
VCAN-209ENST00000513016 PYM1Q9BRP8 204 aaKnown RBP4.96□□□□□ -1.61
VCAN-209ENST00000513016 TRPC5Q9UL62 973 aaPredicted RBP4.96□□□□□ -1.61
VCAN-209ENST00000513016 ATP10AO60312 1499 aa4.96□□□□□ -1.62
VCAN-209ENST00000513016 DUOX2Q9NRD8 1548 aa4.96□□□□□ -1.62
VCAN-209ENST00000513016 BCAR3O75815 825 aa4.96□□□□□ -1.62
VCAN-209ENST00000513016 APBB1IPQ7Z5R6 666 aaPredicted RBP4.96□□□□□ -1.62
VCAN-209ENST00000513016 CAGE1Q8TC20 777 aa4.96□□□□□ -1.62
VCAN-209ENST00000513016 SIRT1Q96EB6 747 aa4.96□□□□□ -1.62
VCAN-209ENST00000513016 DEF6Q9H4E7 631 aa4.96□□□□□ -1.62
VCAN-209ENST00000513016 TSPY2A6NKD2 308 aa4.96□□□□□ -1.62
VCAN-209ENST00000513016 CBFA2T2O43439 604 aa4.96□□□□□ -1.62
VCAN-209ENST00000513016 SETQ01105 290 aaPredicted RBP4.96□□□□□ -1.62
VCAN-209ENST00000513016 CETN1Q12798 172 aa4.96□□□□□ -1.62
VCAN-209ENST00000513016 IL27Q8NEV9 243 aa4.96□□□□□ -1.62
VCAN-209ENST00000513016 PDZRN3Q9UPQ7 1066 aa4.96□□□□□ -1.62
VCAN-209ENST00000513016 EMILIN1Q9Y6C2 1016 aa4.96□□□□□ -1.62
VCAN-209ENST00000513016 PPFIBP1Q86W92 1011 aa4.96□□□□□ -1.62
VCAN-209ENST00000513016 WDR33Q9C0J8 1336 aaKnown RBP4.96□□□□□ -1.62
VCAN-209ENST00000513016 CCDC194A0A1B0GVG4 234 aa4.96□□□□□ -1.62
VCAN-209ENST00000513016 KRT85P78386 507 aa4.96□□□□□ -1.62
VCAN-209ENST00000513016 RXRBP28702 533 aa4.96□□□□□ -1.62
VCAN-209ENST00000513016 KIF22Q14807 665 aa4.96□□□□□ -1.62
VCAN-209ENST00000513016 C1orf115Q9H7X2 142 aa4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms