RNA–Protein interactions for RNA: ENST00000509774.5

PTPN20-222, Transcript of protein tyrosine phosphatase, non-receptor type 20, human

TSL 1 (best) BASIC

Gene PTPN20, Length 788 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN20-222	ENST00000509774	PANK3	Q9H999	370 aa		14.06	□□□□□ -0.16
PTPN20-222	ENST00000509774	PRDM10	Q9NQV6	1147 aa		14.06	□□□□□ -0.16
PTPN20-222	ENST00000509774	WASHC2A	Q641Q2	1341 aa		14.06	□□□□□ -0.16
PTPN20-222	ENST00000509774	IFNLR1	Q8IU57	520 aa	Predicted RBP	14.05	□□□□□ -0.16
PTPN20-222	ENST00000509774	CGNL1	Q0VF96	1302 aa		14.05	□□□□□ -0.16
PTPN20-222	ENST00000509774	ITGB4	P16144	1822 aa		14.04	□□□□□ -0.16
PTPN20-222	ENST00000509774		A0A0G2JLW4	131 aa		14.04	□□□□□ -0.16
PTPN20-222	ENST00000509774	FYB1	O15117	783 aa		14.04	□□□□□ -0.16
PTPN20-222	ENST00000509774	MON2	Q7Z3U7	1717 aa		14.04	□□□□□ -0.16
PTPN20-222	ENST00000509774	CHRM1	P11229	460 aa	Predicted RBP	14.03	□□□□□ -0.16
PTPN20-222	ENST00000509774	COG3	Q96JB2	828 aa		14.03	□□□□□ -0.16
PTPN20-222	ENST00000509774	KNSTRN	Q9Y448	316 aa		14.03	□□□□□ -0.16
PTPN20-222	ENST00000509774	PDE4DIP	Q5VU43	2346 aa		14.03	□□□□□ -0.16
PTPN20-222	ENST00000509774	CCDC88A	Q3V6T2	1871 aa		14.02	□□□□□ -0.16
PTPN20-222	ENST00000509774	MAP2	P11137	1827 aa	Known RBP	14.02	□□□□□ -0.16
PTPN20-222	ENST00000509774	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	14.02	□□□□□ -0.17
PTPN20-222	ENST00000509774	PHF14	O94880	888 aa		14.02	□□□□□ -0.17
PTPN20-222	ENST00000509774	TGFB2	P61812	414 aa		14.02	□□□□□ -0.17
PTPN20-222	ENST00000509774	MLLT1	Q03111	559 aa	Predicted RBP	14.02	□□□□□ -0.17
PTPN20-222	ENST00000509774	GOLGA2	Q08379	1002 aa		14.02	□□□□□ -0.17
PTPN20-222	ENST00000509774	NME9	Q86XW9	330 aa		14.02	□□□□□ -0.17
PTPN20-222	ENST00000509774	ABHD8	Q96I13	439 aa		14.02	□□□□□ -0.17
PTPN20-222	ENST00000509774	CIZ1	Q9ULV3	898 aa	Predicted RBP	14.02	□□□□□ -0.17
PTPN20-222	ENST00000509774	PER1	O15534	1290 aa	Predicted RBP	14.01	□□□□□ -0.17
PTPN20-222	ENST00000509774	FCHSD2	O94868	740 aa		14.01	□□□□□ -0.17
PTPN20-222	ENST00000509774	AK7	Q96M32	723 aa		14.01	□□□□□ -0.17
PTPN20-222	ENST00000509774	VIRMA	Q69YN4	1812 aa	Known RBP	14.01	□□□□□ -0.17
PTPN20-222	ENST00000509774	NSD3	Q9BZ95	1437 aa		14	□□□□□ -0.17
PTPN20-222	ENST00000509774	PALLD	Q8WX93	1383 aa		14	□□□□□ -0.17
PTPN20-222	ENST00000509774	RNF181	Q9P0P0	153 aa		14	□□□□□ -0.17
PTPN20-222	ENST00000509774	TNRC18	O15417	2968 aa	Predicted RBP	13.99	□□□□□ -0.17
PTPN20-222	ENST00000509774	MMP10	P09238	476 aa		13.99	□□□□□ -0.17
PTPN20-222	ENST00000509774	DPEP1	P16444	411 aa		13.99	□□□□□ -0.17
PTPN20-222	ENST00000509774	MEGF6	O75095	1541 aa		13.99	□□□□□ -0.17
PTPN20-222	ENST00000509774	PSEN1	P49768	467 aa		13.98	□□□□□ -0.17
PTPN20-222	ENST00000509774	RGS19	P49795	217 aa		13.98	□□□□□ -0.17
PTPN20-222	ENST00000509774	ZCRB1	Q8TBF4	217 aa	Known RBP	13.98	□□□□□ -0.17
PTPN20-222	ENST00000509774	GGNBP2	Q9H3C7	697 aa		13.98	□□□□□ -0.17
PTPN20-222	ENST00000509774	MKRN1	Q9UHC7	482 aa	Known RBP	13.98	□□□□□ -0.17
PTPN20-222	ENST00000509774	C4A	P0C0L4	1744 aa		13.98	□□□□□ -0.17
PTPN20-222	ENST00000509774	KCNA3	P22001	575 aa		13.97	□□□□□ -0.17
PTPN20-222	ENST00000509774	HMGB2	P26583	209 aa	Known RBP	13.97	□□□□□ -0.17
PTPN20-222	ENST00000509774	SSFA2	P28290	1259 aa		13.97	□□□□□ -0.17
PTPN20-222	ENST00000509774	CTCF	P49711	727 aa	Predicted RBP	13.97	□□□□□ -0.17
PTPN20-222	ENST00000509774	MKRN3	Q13064	507 aa	Known RBP	13.97	□□□□□ -0.17
PTPN20-222	ENST00000509774	NPC1L1	Q9UHC9	1359 aa		13.96	□□□□□ -0.17
PTPN20-222	ENST00000509774	TIAM2	Q8IVF5	1701 aa		13.96	□□□□□ -0.17
PTPN20-222	ENST00000509774	AMER1	Q5JTC6	1135 aa	Predicted RBP	13.96	□□□□□ -0.17
PTPN20-222	ENST00000509774	ZNF316	A6NFI3	1004 aa	Predicted RBP	13.95	□□□□□ -0.18
PTPN20-222	ENST00000509774	VEGFA	P15692	232 aa	Predicted RBP	13.95	□□□□□ -0.18
PTPN20-222	ENST00000509774	LBX1	P52954	281 aa		13.95	□□□□□ -0.18
PTPN20-222	ENST00000509774	DCAF5	Q96JK2	942 aa		13.95	□□□□□ -0.18
PTPN20-222	ENST00000509774	LTV1	Q96GA3	475 aa	Predicted RBP	13.94	□□□□□ -0.18
PTPN20-222	ENST00000509774	LINC00116	Q8NCU8	138 aa		13.93	□□□□□ -0.18
PTPN20-222	ENST00000509774	KIF24	Q5T7B8	1368 aa		13.93	□□□□□ -0.18
PTPN20-222	ENST00000509774	KDM6A	O15550	1401 aa	Predicted RBP	13.92	□□□□□ -0.18
PTPN20-222	ENST00000509774	PDAP1	Q13442	181 aa	Known RBP	13.92	□□□□□ -0.18
PTPN20-222	ENST00000509774	MORC1	Q86VD1	984 aa		13.92	□□□□□ -0.18
PTPN20-222	ENST00000509774	IP6K1	Q92551	441 aa		13.92	□□□□□ -0.18
PTPN20-222	ENST00000509774	AIDA	Q96BJ3	306 aa		13.92	□□□□□ -0.18
PTPN20-222	ENST00000509774	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	13.92	□□□□□ -0.18
PTPN20-222	ENST00000509774	CNTNAP1	P78357	1384 aa		13.92	□□□□□ -0.18
PTPN20-222	ENST00000509774	MPRIP	Q6WCQ1	1025 aa		13.91	□□□□□ -0.18
PTPN20-222	ENST00000509774	PDCD7	Q8N8D1	485 aa	Known RBP	13.91	□□□□□ -0.18
PTPN20-222	ENST00000509774	ZC3H4	Q9UPT8	1303 aa	Known RBP	13.9	□□□□□ -0.18
PTPN20-222	ENST00000509774	GLTPD2	A6NH11	291 aa		13.9	□□□□□ -0.18
PTPN20-222	ENST00000509774	CCDC85C	A6NKD9	419 aa		13.9	□□□□□ -0.18
PTPN20-222	ENST00000509774	POTEC	B2RU33	542 aa		13.9	□□□□□ -0.18
PTPN20-222	ENST00000509774	WBP1L	Q9NX94	342 aa		13.9	□□□□□ -0.18
PTPN20-222	ENST00000509774	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.9	□□□□□ -0.18
PTPN20-222	ENST00000509774	PIM2	Q9P1W9	311 aa		13.9	□□□□□ -0.18
PTPN20-222	ENST00000509774	GNPAT	O15228	680 aa		13.89	□□□□□ -0.19
PTPN20-222	ENST00000509774	AMPH	P49418	695 aa		13.89	□□□□□ -0.19
PTPN20-222	ENST00000509774	DDX10	Q13206	875 aa	Known RBP	13.89	□□□□□ -0.19
PTPN20-222	ENST00000509774	DALRD3	Q5D0E6	543 aa	Known RBP	13.89	□□□□□ -0.19
PTPN20-222	ENST00000509774	SMARCC1	Q92922	1105 aa	Predicted RBP	13.89	□□□□□ -0.19
PTPN20-222	ENST00000509774	CCDC87	Q9NVE4	849 aa		13.89	□□□□□ -0.19
PTPN20-222	ENST00000509774	MAP3K19	Q56UN5	1328 aa		13.89	□□□□□ -0.19
PTPN20-222	ENST00000509774	RTL1	A6NKG5	1358 aa		13.88	□□□□□ -0.19
PTPN20-222	ENST00000509774	ST18	O60284	1047 aa		13.88	□□□□□ -0.19
PTPN20-222	ENST00000509774	HSPA8	P11142	646 aa	Known RBP	13.88	□□□□□ -0.19
PTPN20-222	ENST00000509774	RASSF7	Q02833	373 aa		13.88	□□□□□ -0.19
PTPN20-222	ENST00000509774	DICER1	Q9UPY3	1922 aa	Known RBP	13.88	□□□□□ -0.19
PTPN20-222	ENST00000509774	HOXC9	P31274	260 aa		13.87	□□□□□ -0.19
PTPN20-222	ENST00000509774	NLGN1	Q8N2Q7	840 aa		13.87	□□□□□ -0.19
PTPN20-222	ENST00000509774	POLK	Q9UBT6	870 aa		13.87	□□□□□ -0.19
PTPN20-222	ENST00000509774	LOC102724428	A0A0B4J2F2	783 aa		13.86	□□□□□ -0.19
PTPN20-222	ENST00000509774	VEGFB	P49765	207 aa		13.86	□□□□□ -0.19
PTPN20-222	ENST00000509774	SIK1	P57059	783 aa		13.86	□□□□□ -0.19
PTPN20-222	ENST00000509774	ITPK1	Q13572	414 aa		13.86	□□□□□ -0.19
PTPN20-222	ENST00000509774	RRS1	Q15050	365 aa	Known RBP	13.86	□□□□□ -0.19
PTPN20-222	ENST00000509774	CC2D1B	Q5T0F9	858 aa	Known RBP	13.86	□□□□□ -0.19
PTPN20-222	ENST00000509774	C3orf67	Q6ZVT6	689 aa		13.86	□□□□□ -0.19
PTPN20-222	ENST00000509774	INSR	P06213	1382 aa		13.85	□□□□□ -0.19
PTPN20-222	ENST00000509774	FLT4	P35916	1363 aa		13.85	□□□□□ -0.19
PTPN20-222	ENST00000509774	FBLN1	P23142	703 aa		13.85	□□□□□ -0.19
PTPN20-222	ENST00000509774	MYH14	Q7Z406	1995 aa	Known RBP	13.85	□□□□□ -0.19
PTPN20-222	ENST00000509774	PIGB	Q92521	554 aa		13.84	□□□□□ -0.19
PTPN20-222	ENST00000509774	L3MBTL3	Q96JM7	780 aa	Predicted RBP	13.84	□□□□□ -0.19
PTPN20-222	ENST00000509774	KIF20B	Q96Q89	1820 aa		13.84	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms