RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 PNMA6EA0A0J9YXQ4 647 aa21.3■■□□□ 1
NUP54-205ENST00000507257 SGSM2O43147 1006 aa21.3■■□□□ 1
NUP54-205ENST00000507257 CTIFO43310 598 aaKnown RBP21.3■■□□□ 1
NUP54-205ENST00000507257 SYT1P21579 422 aa21.3■■□□□ 1
NUP54-205ENST00000507257 CHAF1AQ13111 956 aaPredicted RBP21.3■■□□□ 1
NUP54-205ENST00000507257 NOL8Q76FK4 1167 aaKnown RBP21.3■■□□□ 1
NUP54-205ENST00000507257 STK31Q9BXU1 1019 aa21.3■■□□□ 1
NUP54-205ENST00000507257 BCL2L12Q9HB09 334 aa21.3■■□□□ 1
NUP54-205ENST00000507257 USP31Q70CQ4 1352 aa21.3■■□□□ 1
NUP54-205ENST00000507257 KIF20AO95235 890 aa21.29■■□□□ 1
NUP54-205ENST00000507257 TOPAZ1Q8N9V7 1692 aa21.29■■□□□ 1
NUP54-205ENST00000507257 SYCP1Q15431 976 aa21.29■■□□□ 1
NUP54-205ENST00000507257 UNC5CLQ8IV45 518 aa21.29■■□□□ 1
NUP54-205ENST00000507257 SENP3Q9H4L4 574 aaPredicted RBP21.29■■□□□ 1
NUP54-205ENST00000507257 TSPYL4Q9UJ04 414 aa21.29■■□□□ 1
NUP54-205ENST00000507257 STAG3Q9UJ98 1225 aa21.29■■□□□ 1
NUP54-205ENST00000507257 SNX14Q9Y5W7 946 aa21.29■■□□□ 1
NUP54-205ENST00000507257 FMN2Q9NZ56 1722 aa21.29■■□□□ 1
NUP54-205ENST00000507257 HTATSF1O43719 755 aaKnown RBP21.28■■□□□ 1
NUP54-205ENST00000507257 KDRP35968 1356 aa21.28■■□□□ 1
NUP54-205ENST00000507257 FBXO31Q5XUX0 539 aaPredicted RBP21.28■■□□□ 1
NUP54-205ENST00000507257 SSH3Q8TE77 659 aa21.28■■□□□ 1
NUP54-205ENST00000507257 FLIIQ13045 1269 aa21.27■■□□□ 1
NUP54-205ENST00000507257 LSG1Q9H089 658 aaKnown RBP21.27■■□□□ 1
NUP54-205ENST00000507257 KCNF1Q9H3M0 494 aa21.27■■□□□ 1
NUP54-205ENST00000507257 SMC3Q9UQE7 1217 aa21.27■■□□□ 1
NUP54-205ENST00000507257 CHD2O14647 1828 aaKnown RBP21.27■■□□□ 1
NUP54-205ENST00000507257 AK2P54819 239 aa21.26■□□□□ 0.99
NUP54-205ENST00000507257 PPP4R3BQ5MIZ7 849 aa21.26■□□□□ 0.99
NUP54-205ENST00000507257 CCDC30Q5VVM6 783 aa21.26■□□□□ 0.99
NUP54-205ENST00000507257 RTF1Q92541 710 aaKnown RBP21.26■□□□□ 0.99
NUP54-205ENST00000507257 IL25Q9H293 177 aa21.26■□□□□ 0.99
NUP54-205ENST00000507257 FOXD4L6Q3SYB3 417 aaPredicted RBP21.25■□□□□ 0.99
NUP54-205ENST00000507257 FOXD4L3Q6VB84 417 aaPredicted RBP21.25■□□□□ 0.99
NUP54-205ENST00000507257 RUFY3Q7L099 469 aa21.25■□□□□ 0.99
NUP54-205ENST00000507257 PDCL2Q8N4E4 241 aa21.25■□□□□ 0.99
NUP54-205ENST00000507257 AGLP35573 1532 aa21.25■□□□□ 0.99
NUP54-205ENST00000507257 CCDC192P0DO97 292 aa21.25■□□□□ 0.99
NUP54-205ENST00000507257 PI4K2BQ8TCG2 481 aa21.25■□□□□ 0.99
NUP54-205ENST00000507257 ZSCAN31Q96LW9 406 aaPredicted RBP21.25■□□□□ 0.99
NUP54-205ENST00000507257 SH2B1Q9NRF2 756 aaPredicted RBP21.25■□□□□ 0.99
NUP54-205ENST00000507257 CCDC171Q6TFL3 1326 aa21.24■□□□□ 0.99
NUP54-205ENST00000507257 USP42Q9H9J4 1324 aaKnown RBP21.24■□□□□ 0.99
NUP54-205ENST00000507257 FEZ1Q99689 392 aa21.24■□□□□ 0.99
NUP54-205ENST00000507257 TM6SF1Q9BZW5 370 aa21.24■□□□□ 0.99
NUP54-205ENST00000507257 PRDM10Q9NQV6 1147 aa21.24■□□□□ 0.99
NUP54-205ENST00000507257 MAP3K5Q99683 1374 aa21.24■□□□□ 0.99
NUP54-205ENST00000507257 POLA2Q14181 598 aa21.23■□□□□ 0.99
NUP54-205ENST00000507257 C17orf53Q8N3J3 647 aaPredicted RBP21.23■□□□□ 0.99
NUP54-205ENST00000507257 TSC1Q92574 1164 aa21.23■□□□□ 0.99
NUP54-205ENST00000507257 BABAM1Q9NWV8 329 aa21.23■□□□□ 0.99
NUP54-205ENST00000507257 MTMR6Q9Y217 621 aa21.23■□□□□ 0.99
NUP54-205ENST00000507257 AP5Z1O43299 807 aa21.23■□□□□ 0.99
NUP54-205ENST00000507257 FAM200AQ8TCP9 573 aa21.23■□□□□ 0.99
NUP54-205ENST00000507257 KCNB2Q92953 911 aa21.23■□□□□ 0.99
NUP54-205ENST00000507257 ARID3AQ99856 593 aa21.23■□□□□ 0.99
NUP54-205ENST00000507257 LRRFIP2Q9Y608 721 aaKnown RBP21.23■□□□□ 0.99
NUP54-205ENST00000507257 ELP1O95163 1332 aa21.22■□□□□ 0.99
NUP54-205ENST00000507257 RIOK3O14730 519 aaKnown RBP21.22■□□□□ 0.99
NUP54-205ENST00000507257 ATP2B3Q16720 1220 aa21.22■□□□□ 0.99
NUP54-205ENST00000507257 VPS53Q5VIR6 699 aa21.22■□□□□ 0.99
NUP54-205ENST00000507257 GIMAP6Q6P9H5 292 aa21.22■□□□□ 0.99
NUP54-205ENST00000507257 CNTROBQ8N137 903 aa21.22■□□□□ 0.99
NUP54-205ENST00000507257 JARID2Q92833 1246 aaPredicted RBP21.22■□□□□ 0.99
NUP54-205ENST00000507257 PYCARDQ9ULZ3 195 aa21.22■□□□□ 0.99
NUP54-205ENST00000507257 METP08581 1390 aa21.22■□□□□ 0.99
NUP54-205ENST00000507257 PRR36Q9H6K5 1346 aa21.22■□□□□ 0.99
NUP54-205ENST00000507257 FIBPO43427 364 aa21.21■□□□□ 0.99
NUP54-205ENST00000507257 HYPKQ9NX55 129 aa21.21■□□□□ 0.99
NUP54-205ENST00000507257 MTHFSDQ2M296 383 aaKnown RBP21.21■□□□□ 0.99
NUP54-205ENST00000507257 USP44Q9H0E7 712 aa21.21■□□□□ 0.99
NUP54-205ENST00000507257 MAP3K19Q56UN5 1328 aa21.2■□□□□ 0.99
NUP54-205ENST00000507257 CBX1P83916 185 aa21.2■□□□□ 0.98
NUP54-205ENST00000507257 MPNDQ8N594 471 aa21.2■□□□□ 0.98
NUP54-205ENST00000507257 KIF1BPQ96EK5 621 aa21.2■□□□□ 0.98
NUP54-205ENST00000507257 USP6P35125 1406 aa21.2■□□□□ 0.98
NUP54-205ENST00000507257 PLEKHG3A1L390 1219 aa21.19■□□□□ 0.98
NUP54-205ENST00000507257 UBTFL1P0CB47 393 aaPredicted RBP21.19■□□□□ 0.98
NUP54-205ENST00000507257 HSP90AB2PQ58FF8 381 aa21.19■□□□□ 0.98
NUP54-205ENST00000507257 RASEFQ8IZ41 740 aa21.19■□□□□ 0.98
NUP54-205ENST00000507257 MIS18AQ9NYP9 233 aa21.19■□□□□ 0.98
NUP54-205ENST00000507257 ARHGAP30Q7Z6I6 1101 aaPredicted RBP21.19■□□□□ 0.98
NUP54-205ENST00000507257 ADGRL3Q9HAR2 1447 aa21.19■□□□□ 0.98
NUP54-205ENST00000507257 RHPN1Q8TCX5 695 aa21.18■□□□□ 0.98
NUP54-205ENST00000507257 TTC41PQ6P2S7 1318 aa21.18■□□□□ 0.98
NUP54-205ENST00000507257 NCKAP5LQ9HCH0 1330 aa21.18■□□□□ 0.98
NUP54-205ENST00000507257 GJB2P29033 226 aa21.17■□□□□ 0.98
NUP54-205ENST00000507257 DNM1Q05193 864 aaKnown RBP21.17■□□□□ 0.98
NUP54-205ENST00000507257 ZSWIM6Q9HCJ5 1215 aa21.17■□□□□ 0.98
NUP54-205ENST00000507257 ZHX1Q9UKY1 873 aaPredicted RBP21.17■□□□□ 0.98
NUP54-205ENST00000507257 SBNO1A3KN83 1393 aa21.17■□□□□ 0.98
NUP54-205ENST00000507257 RIMS1Q86UR5 1692 aaKnown RBP21.17■□□□□ 0.98
NUP54-205ENST00000507257 HSP90AB4PQ58FF6 505 aa21.17■□□□□ 0.98
NUP54-205ENST00000507257 RUFY2Q8WXA3 655 aa21.17■□□□□ 0.98
NUP54-205ENST00000507257 IGSF1Q8N6C5 1336 aa21.17■□□□□ 0.98
NUP54-205ENST00000507257 FLT4P35916 1363 aa21.16■□□□□ 0.98
NUP54-205ENST00000507257 MAP3K11Q16584 847 aa21.16■□□□□ 0.98
NUP54-205ENST00000507257 RBM43Q6ZSC3 357 aaKnown RBP21.16■□□□□ 0.98
NUP54-205ENST00000507257 TXNDC2Q86VQ3 553 aa21.16■□□□□ 0.98
NUP54-205ENST00000507257 SMTNL1A8MU46 457 aa21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms