RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 SPC24Q8NBT2 197 aa20.48■□□□□ 0.87
SQSTM1-211ENST00000506690 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.48■□□□□ 0.87
SQSTM1-211ENST00000506690 AOX1Q06278 1338 aa20.48■□□□□ 0.87
SQSTM1-211ENST00000506690 FGD1P98174 961 aa20.47■□□□□ 0.87
SQSTM1-211ENST00000506690 TAF3Q5VWG9 929 aa20.47■□□□□ 0.87
SQSTM1-211ENST00000506690 ZRANB1Q9UGI0 708 aa20.47■□□□□ 0.87
SQSTM1-211ENST00000506690 F6X3S4 739 aa20.47■□□□□ 0.87
SQSTM1-211ENST00000506690 TPRNQ4KMQ1 711 aa20.47■□□□□ 0.87
SQSTM1-211ENST00000506690 SLC4A10Q6U841 1118 aa20.47■□□□□ 0.87
SQSTM1-211ENST00000506690 NRKQ7Z2Y5 1582 aa20.47■□□□□ 0.87
SQSTM1-211ENST00000506690 RRS1Q15050 365 aaKnown RBP20.46■□□□□ 0.87
SQSTM1-211ENST00000506690 G2E3Q7L622 706 aa20.46■□□□□ 0.87
SQSTM1-211ENST00000506690 CTNNA3Q9UI47 895 aa20.46■□□□□ 0.87
SQSTM1-211ENST00000506690 CCDC192P0DO97 292 aa20.46■□□□□ 0.87
SQSTM1-211ENST00000506690 MCM10Q7L590 875 aa20.46■□□□□ 0.87
SQSTM1-211ENST00000506690 LIMCH1Q9UPQ0 1083 aa20.46■□□□□ 0.87
SQSTM1-211ENST00000506690 SPATA31D1Q6ZQQ2 1576 aa20.46■□□□□ 0.87
SQSTM1-211ENST00000506690 RAD50Q92878 1312 aa20.45■□□□□ 0.87
SQSTM1-211ENST00000506690 AK2P54819 239 aa20.45■□□□□ 0.86
SQSTM1-211ENST00000506690 RUFY3Q7L099 469 aa20.45■□□□□ 0.86
SQSTM1-211ENST00000506690 DNAJC5Q9H3Z4 198 aa20.45■□□□□ 0.86
SQSTM1-211ENST00000506690 SNX14Q9Y5W7 946 aa20.45■□□□□ 0.86
SQSTM1-211ENST00000506690 DLC1Q96QB1 1528 aa20.45■□□□□ 0.86
SQSTM1-211ENST00000506690 PNMA6EA0A0J9YXQ4 647 aa20.45■□□□□ 0.86
SQSTM1-211ENST00000506690 PTGS1P23219 599 aa20.45■□□□□ 0.86
SQSTM1-211ENST00000506690 ATP8B2P98198 1209 aa20.45■□□□□ 0.86
SQSTM1-211ENST00000506690 AEBP1Q8IUX7 1158 aa20.45■□□□□ 0.86
SQSTM1-211ENST00000506690 CRB1P82279 1406 aa20.44■□□□□ 0.86
SQSTM1-211ENST00000506690 FAM200AQ8TCP9 573 aa20.44■□□□□ 0.86
SQSTM1-211ENST00000506690 SMC3Q9UQE7 1217 aa20.44■□□□□ 0.86
SQSTM1-211ENST00000506690 SMTNL1A8MU46 457 aa20.44■□□□□ 0.86
SQSTM1-211ENST00000506690 IGSF3O75054 1194 aa20.44■□□□□ 0.86
SQSTM1-211ENST00000506690 DNM1Q05193 864 aaKnown RBP20.44■□□□□ 0.86
SQSTM1-211ENST00000506690 GABPB1Q06547 395 aaPredicted RBP20.44■□□□□ 0.86
SQSTM1-211ENST00000506690 ARHGEF10O15013 1369 aa20.43■□□□□ 0.86
SQSTM1-211ENST00000506690 COG3Q96JB2 828 aa20.43■□□□□ 0.86
SQSTM1-211ENST00000506690 MTMR6Q9Y217 621 aa20.43■□□□□ 0.86
SQSTM1-211ENST00000506690 SGSM2O43147 1006 aa20.42■□□□□ 0.86
SQSTM1-211ENST00000506690 SULT6B1Q6IMI4 303 aa20.42■□□□□ 0.86
SQSTM1-211ENST00000506690 DDX41Q9UJV9 622 aaKnown RBP20.42■□□□□ 0.86
SQSTM1-211ENST00000506690 GNAI3P08754 354 aa20.41■□□□□ 0.86
SQSTM1-211ENST00000506690 CPS1P31327 1500 aa20.41■□□□□ 0.86
SQSTM1-211ENST00000506690 RASEFQ8IZ41 740 aa20.41■□□□□ 0.86
SQSTM1-211ENST00000506690 LSG1Q9H089 658 aaKnown RBP20.41■□□□□ 0.86
SQSTM1-211ENST00000506690 CGNQ9P2M7 1197 aaKnown RBP20.41■□□□□ 0.86
SQSTM1-211ENST00000506690 MON2Q7Z3U7 1717 aa20.4■□□□□ 0.86
SQSTM1-211ENST00000506690 WAPLQ7Z5K2 1190 aa20.4■□□□□ 0.86
SQSTM1-211ENST00000506690 EIF4A2Q14240 407 aaKnown RBP20.39■□□□□ 0.86
SQSTM1-211ENST00000506690 ZNF771Q7L3S4 317 aaPredicted RBP20.39■□□□□ 0.86
SQSTM1-211ENST00000506690 CCDC186Q7Z3E2 898 aa20.39■□□□□ 0.86
SQSTM1-211ENST00000506690 MRVI1Q9Y6F6 885 aa20.39■□□□□ 0.86
SQSTM1-211ENST00000506690 RTF1Q92541 710 aaKnown RBP20.39■□□□□ 0.85
SQSTM1-211ENST00000506690 LARP6Q9BRS8 491 aaKnown RBP20.39■□□□□ 0.85
SQSTM1-211ENST00000506690 PAXBP1Q9Y5B6 917 aa20.39■□□□□ 0.85
SQSTM1-211ENST00000506690 MORC2Q9Y6X9 1032 aaPredicted RBP20.39■□□□□ 0.85
SQSTM1-211ENST00000506690 A2ML1A8K2U0 1454 aa20.39■□□□□ 0.85
SQSTM1-211ENST00000506690 GJB2P29033 226 aa20.38■□□□□ 0.85
SQSTM1-211ENST00000506690 C16orf45Q96MC5 204 aaPredicted RBP20.38■□□□□ 0.85
SQSTM1-211ENST00000506690 XRN1Q8IZH2 1706 aaKnown RBP20.38■□□□□ 0.85
SQSTM1-211ENST00000506690 LARGE1O95461 756 aa20.38■□□□□ 0.85
SQSTM1-211ENST00000506690 LRMPQ12912 555 aa20.38■□□□□ 0.85
SQSTM1-211ENST00000506690 HYPKQ9NX55 129 aa20.38■□□□□ 0.85
SQSTM1-211ENST00000506690 SLFN14P0C7P3 912 aa20.37■□□□□ 0.85
SQSTM1-211ENST00000506690 TYRO3Q06418 890 aa20.37■□□□□ 0.85
SQSTM1-211ENST00000506690 MAP3K11Q16584 847 aa20.37■□□□□ 0.85
SQSTM1-211ENST00000506690 C3P01024 1663 aa20.37■□□□□ 0.85
SQSTM1-211ENST00000506690 TNNT1P13805 278 aa20.37■□□□□ 0.85
SQSTM1-211ENST00000506690 LUZP1Q86V48 1076 aa20.37■□□□□ 0.85
SQSTM1-211ENST00000506690 PLA2G4DQ86XP0 818 aa20.36■□□□□ 0.85
SQSTM1-211ENST00000506690 PI4K2BQ8TCG2 481 aa20.36■□□□□ 0.85
SQSTM1-211ENST00000506690 MIS18AQ9NYP9 233 aa20.36■□□□□ 0.85
SQSTM1-211ENST00000506690 ZSCAN25Q6NSZ9 544 aa20.36■□□□□ 0.85
SQSTM1-211ENST00000506690 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.36■□□□□ 0.85
SQSTM1-211ENST00000506690 NUP62CLQ9H1M0 184 aa20.36■□□□□ 0.85
SQSTM1-211ENST00000506690 SOS1Q07889 1333 aaPredicted RBP20.35■□□□□ 0.85
SQSTM1-211ENST00000506690 CCDC83Q8IWF9 413 aa20.35■□□□□ 0.85
SQSTM1-211ENST00000506690 N4BP2Q86UW6 1770 aaPredicted RBP20.35■□□□□ 0.85
SQSTM1-211ENST00000506690 ELP1O95163 1332 aa20.35■□□□□ 0.85
SQSTM1-211ENST00000506690 RGPD1P0DJD0 1748 aa20.35■□□□□ 0.85
SQSTM1-211ENST00000506690 GTF2E1P29083 439 aaPredicted RBP20.35■□□□□ 0.85
SQSTM1-211ENST00000506690 CCDC112Q8NEF3 446 aa20.35■□□□□ 0.85
SQSTM1-211ENST00000506690 KIF18AQ8NI77 898 aa20.35■□□□□ 0.85
SQSTM1-211ENST00000506690 NRBP1Q9UHY1 535 aa20.35■□□□□ 0.85
SQSTM1-211ENST00000506690 LRRFIP2Q9Y608 721 aaKnown RBP20.35■□□□□ 0.85
SQSTM1-211ENST00000506690 NAA30Q147X3 362 aaPredicted RBP20.34■□□□□ 0.85
SQSTM1-211ENST00000506690 TTC6Q86TZ1 520 aa20.34■□□□□ 0.85
SQSTM1-211ENST00000506690 BBXQ8WY36 941 aaPredicted RBP20.34■□□□□ 0.85
SQSTM1-211ENST00000506690 CBX8Q9HC52 389 aa20.34■□□□□ 0.85
SQSTM1-211ENST00000506690 IL1RAPL2Q9NP60 686 aa20.34■□□□□ 0.85
SQSTM1-211ENST00000506690 WASLO00401 505 aaPredicted RBP20.34■□□□□ 0.85
SQSTM1-211ENST00000506690 CASTP20810 708 aaKnown RBP20.34■□□□□ 0.85
SQSTM1-211ENST00000506690 ZNF75DP51815 510 aa20.34■□□□□ 0.85
SQSTM1-211ENST00000506690 NUTM1Q86Y26 1132 aa20.34■□□□□ 0.85
SQSTM1-211ENST00000506690 CRYBG1Q9Y4K1 1723 aa20.33■□□□□ 0.85
SQSTM1-211ENST00000506690 MAP4K4O95819 1239 aaPredicted RBP20.33■□□□□ 0.85
SQSTM1-211ENST00000506690 LIG1P18858 919 aa20.33■□□□□ 0.85
SQSTM1-211ENST00000506690 VPS53Q5VIR6 699 aa20.33■□□□□ 0.85
SQSTM1-211ENST00000506690 ZSCAN31Q96LW9 406 aaPredicted RBP20.33■□□□□ 0.85
SQSTM1-211ENST00000506690 SH2B1Q9NRF2 756 aaPredicted RBP20.33■□□□□ 0.85
SQSTM1-211ENST00000506690 TMEM51Q9NW97 253 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms