RNA–Protein interactions for RNA: ENST00000503468.5

NEDD4-204, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best)

Gene NEDD4, Length 6,339 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-204ENST00000503468 SEMA3FQ13275 785 aa3.61□□□□□ -1.83
NEDD4-204ENST00000503468 ZBED3Q96IU2 234 aaPredicted RBP3.61□□□□□ -1.83
NEDD4-204ENST00000503468 NUDCQ9Y266 331 aa3.61□□□□□ -1.83
NEDD4-204ENST00000503468 ZNF335Q9H4Z2 1342 aaPredicted RBP3.6□□□□□ -1.83
NEDD4-204ENST00000503468 PLXNA1Q9UIW2 1896 aa3.6□□□□□ -1.83
NEDD4-204ENST00000503468 CFAP65Q6ZU64 1925 aaKnown RBP3.6□□□□□ -1.83
NEDD4-204ENST00000503468 WWC1Q8IX03 1113 aa3.6□□□□□ -1.83
NEDD4-204ENST00000503468 EMILIN1Q9Y6C2 1016 aa3.6□□□□□ -1.83
NEDD4-204ENST00000503468 TNNT2P45379 298 aaPredicted RBP3.6□□□□□ -1.83
NEDD4-204ENST00000503468 CALD1Q05682 793 aaKnown RBP3.6□□□□□ -1.83
NEDD4-204ENST00000503468 HNRNPUL2Q1KMD3 747 aaKnown RBP3.6□□□□□ -1.83
NEDD4-204ENST00000503468 BRINP3Q76B58 766 aa3.6□□□□□ -1.83
NEDD4-204ENST00000503468 PTPRCP08575 1304 aa3.6□□□□□ -1.83
NEDD4-204ENST00000503468 TRIM44Q96DX7 344 aaPredicted RBP3.6□□□□□ -1.83
NEDD4-204ENST00000503468 ZNFX1Q9P2E3 1918 aaKnown RBP3.6□□□□□ -1.83
NEDD4-204ENST00000503468 C10orf142B7Z368 130 aa3.6□□□□□ -1.83
NEDD4-204ENST00000503468 CUL4AQ13619 759 aa3.6□□□□□ -1.83
NEDD4-204ENST00000503468 GSE1Q14687 1217 aa3.6□□□□□ -1.83
NEDD4-204ENST00000503468 CADPS2Q86UW7 1296 aa3.6□□□□□ -1.83
NEDD4-204ENST00000503468 FBXO31Q5XUX0 539 aaPredicted RBP3.59□□□□□ -1.83
NEDD4-204ENST00000503468 HSP90AA2PQ14568 343 aaPredicted RBP3.59□□□□□ -1.83
NEDD4-204ENST00000503468 ANKS1AQ92625 1134 aa3.59□□□□□ -1.83
NEDD4-204ENST00000503468 SPINK5Q9NQ38 1064 aaPredicted RBP3.59□□□□□ -1.83
NEDD4-204ENST00000503468 MAP4K4O95819 1239 aaPredicted RBP3.59□□□□□ -1.83
NEDD4-204ENST00000503468 FECHP22830 423 aa3.59□□□□□ -1.83
NEDD4-204ENST00000503468 CNNM4Q6P4Q7 775 aa3.59□□□□□ -1.83
NEDD4-204ENST00000503468 SIRT2Q8IXJ6 389 aa3.59□□□□□ -1.83
NEDD4-204ENST00000503468 COPRSQ9NQ92 184 aa3.59□□□□□ -1.83
NEDD4-204ENST00000503468 DMRT2Q9Y5R5 561 aa3.59□□□□□ -1.83
NEDD4-204ENST00000503468 WDR81Q562E7 1941 aa3.59□□□□□ -1.83
NEDD4-204ENST00000503468 PLSCR1O15162 318 aa3.59□□□□□ -1.84
NEDD4-204ENST00000503468 KCNH5Q8NCM2 988 aa3.59□□□□□ -1.84
NEDD4-204ENST00000503468 ISCA1Q9BUE6 129 aa3.59□□□□□ -1.84
NEDD4-204ENST00000503468 SALL2Q9Y467 1007 aaPredicted RBP3.59□□□□□ -1.84
NEDD4-204ENST00000503468 TMEM87AQ8NBN3 555 aa3.59□□□□□ -1.84
NEDD4-204ENST00000503468 NPHP3Q7Z494 1330 aa3.58□□□□□ -1.84
NEDD4-204ENST00000503468 ZBTB7BO15156 539 aaPredicted RBP3.58□□□□□ -1.84
NEDD4-204ENST00000503468 MSH5O43196 834 aa3.58□□□□□ -1.84
NEDD4-204ENST00000503468 ZSWIM8A7E2V4 1837 aa3.58□□□□□ -1.84
NEDD4-204ENST00000503468 HNRNPUQ00839 825 aaKnown RBP eCLIP3.58□□□□□ -1.84
NEDD4-204ENST00000503468 DCTPP1Q9H773 170 aa3.58□□□□□ -1.84
NEDD4-204ENST00000503468 ERVV-2B6SEH9 535 aa3.58□□□□□ -1.84
NEDD4-204ENST00000503468 RARSP54136 660 aaKnown RBP3.58□□□□□ -1.84
NEDD4-204ENST00000503468 SNX21Q969T3 373 aa3.58□□□□□ -1.84
NEDD4-204ENST00000503468 IQSEC3Q9UPP2 1182 aaPredicted RBP3.58□□□□□ -1.84
NEDD4-204ENST00000503468 FOXP2O15409 715 aa3.58□□□□□ -1.84
NEDD4-204ENST00000503468 HSP90AA1P07900 732 aaKnown RBP3.58□□□□□ -1.84
NEDD4-204ENST00000503468 H7C1W4 665 aa3.58□□□□□ -1.84
NEDD4-204ENST00000503468 TERF1P54274 439 aa3.58□□□□□ -1.84
NEDD4-204ENST00000503468 FKBP1AP62942 108 aaKnown RBP3.58□□□□□ -1.84
NEDD4-204ENST00000503468 TBC1D2Q9BYX2 928 aa3.58□□□□□ -1.84
NEDD4-204ENST00000503468 TM6SF1Q9BZW5 370 aa3.58□□□□□ -1.84
NEDD4-204ENST00000503468 HMGB2P26583 209 aaKnown RBP3.57□□□□□ -1.84
NEDD4-204ENST00000503468 MYO5AQ9Y4I1 1855 aaKnown RBP3.57□□□□□ -1.84
NEDD4-204ENST00000503468 FGFR2P21802 821 aa3.57□□□□□ -1.84
NEDD4-204ENST00000503468 C7orf43Q8WVR3 580 aa3.57□□□□□ -1.84
NEDD4-204ENST00000503468 ZMYND15Q9H091 742 aa3.57□□□□□ -1.84
NEDD4-204ENST00000503468 SCN4AP35499 1836 aa3.57□□□□□ -1.84
NEDD4-204ENST00000503468 LOXHD1Q8IVV2 1947 aa3.57□□□□□ -1.84
NEDD4-204ENST00000503468 BHMG1C9JSJ3 638 aaPredicted RBP3.57□□□□□ -1.84
NEDD4-204ENST00000503468 TPM2P07951 284 aa3.57□□□□□ -1.84
NEDD4-204ENST00000503468 RRP7BPQ9NSQ0 103 aa3.57□□□□□ -1.84
NEDD4-204ENST00000503468 SPATA31A5Q5VU36 1347 aa3.57□□□□□ -1.84
NEDD4-204ENST00000503468 SPATA31A7Q8IWB4 1347 aa3.57□□□□□ -1.84
NEDD4-204ENST00000503468 E9PSI1 815 aa3.57□□□□□ -1.84
NEDD4-204ENST00000503468 PDIA4P13667 645 aaKnown RBP3.57□□□□□ -1.84
NEDD4-204ENST00000503468 EIF5P55010 431 aaKnown RBP3.57□□□□□ -1.84
NEDD4-204ENST00000503468 CRYGNQ8WXF5 182 aa3.57□□□□□ -1.84
NEDD4-204ENST00000503468 CHMP4AQ9BY43 222 aa3.57□□□□□ -1.84
NEDD4-204ENST00000503468 GIGYF1O75420 1035 aaPredicted RBP3.56□□□□□ -1.84
NEDD4-204ENST00000503468 VPS33BQ9H267 617 aa3.56□□□□□ -1.84
NEDD4-204ENST00000503468 SCN9AQ15858 1988 aa3.56□□□□□ -1.84
NEDD4-204ENST00000503468 ERVV-1B6SEH8 477 aa3.56□□□□□ -1.84
NEDD4-204ENST00000503468 NFE2L2Q16236 605 aa3.56□□□□□ -1.84
NEDD4-204ENST00000503468 CFHR5Q9BXR6 569 aa3.56□□□□□ -1.84
NEDD4-204ENST00000503468 ALDH1L1O75891 902 aa3.56□□□□□ -1.84
NEDD4-204ENST00000503468 PTMSP20962 102 aa3.56□□□□□ -1.84
NEDD4-204ENST00000503468 NBR1Q14596 966 aa3.56□□□□□ -1.84
NEDD4-204ENST00000503468 RTFDC1Q9BY42 306 aaPredicted RBP3.56□□□□□ -1.84
NEDD4-204ENST00000503468 PDCL3Q9H2J4 239 aa3.56□□□□□ -1.84
NEDD4-204ENST00000503468 NUDT16Q96DE0 195 aaKnown RBP3.56□□□□□ -1.84
NEDD4-204ENST00000503468 ACEP12821 1306 aa3.56□□□□□ -1.84
NEDD4-204ENST00000503468 VPS72Q15906 364 aa3.55□□□□□ -1.84
NEDD4-204ENST00000503468 DDX10Q13206 875 aaKnown RBP3.55□□□□□ -1.84
NEDD4-204ENST00000503468 CLCN1P35523 988 aa3.55□□□□□ -1.84
NEDD4-204ENST00000503468 BECN1Q14457 450 aa3.55□□□□□ -1.84
NEDD4-204ENST00000503468 ANP32BQ92688 251 aaKnown RBP3.55□□□□□ -1.84
NEDD4-204ENST00000503468 ALX1Q15699 326 aa3.55□□□□□ -1.84
NEDD4-204ENST00000503468 CLEC4GQ6UXB4 293 aa3.55□□□□□ -1.84
NEDD4-204ENST00000503468 RUNDC1Q96C34 613 aa3.55□□□□□ -1.84
NEDD4-204ENST00000503468 USP20Q9Y2K6 914 aa3.55□□□□□ -1.84
NEDD4-204ENST00000503468 BMP2KLQ5H9B9 411 aa3.55□□□□□ -1.84
NEDD4-204ENST00000503468 TAF3Q5VWG9 929 aa3.55□□□□□ -1.84
NEDD4-204ENST00000503468 ANKLE2Q86XL3 938 aa3.55□□□□□ -1.84
NEDD4-204ENST00000503468 MAP3K14Q99558 947 aa3.55□□□□□ -1.84
NEDD4-204ENST00000503468 RGL3Q3MIN7 710 aa3.54□□□□□ -1.84
NEDD4-204ENST00000503468 PPP4R3CPQ6ZMV5 832 aa3.54□□□□□ -1.84
NEDD4-204ENST00000503468 CASP8AP2Q9UKL3 1982 aa3.54□□□□□ -1.84
NEDD4-204ENST00000503468 NAV1Q8NEY1 1877 aa3.54□□□□□ -1.84
NEDD4-204ENST00000503468 FRMPD4Q14CM0 1322 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms