RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 CCDC83Q8IWF9 413 aa12.76□□□□□ -0.37
LIMCH1-205ENST00000503057 ANKRD20A12PQ8NF67 263 aa12.76□□□□□ -0.37
LIMCH1-205ENST00000503057 RHPN1Q8TCX5 695 aa12.76□□□□□ -0.37
LIMCH1-205ENST00000503057 FMNL2Q96PY5 1086 aa12.76□□□□□ -0.37
LIMCH1-205ENST00000503057 PLEKHM2Q8IWE5 1019 aa12.76□□□□□ -0.37
LIMCH1-205ENST00000503057 FAM13BQ9NYF5 915 aa12.76□□□□□ -0.37
LIMCH1-205ENST00000503057 ABCC3O15438 1527 aa12.76□□□□□ -0.37
LIMCH1-205ENST00000503057 YEATS2Q9ULM3 1422 aa12.76□□□□□ -0.37
LIMCH1-205ENST00000503057 STK38Q15208 465 aa12.76□□□□□ -0.37
LIMCH1-205ENST00000503057 KLHL40Q2TBA0 621 aa12.76□□□□□ -0.37
LIMCH1-205ENST00000503057 BOLA2Q9H3K6 86 aa12.76□□□□□ -0.37
LIMCH1-205ENST00000503057 TBX22Q9Y458 520 aa12.76□□□□□ -0.37
LIMCH1-205ENST00000503057 MTERF4Q7Z6M4 381 aaKnown RBP12.75□□□□□ -0.37
LIMCH1-205ENST00000503057 ESYT1Q9BSJ8 1104 aa12.75□□□□□ -0.37
LIMCH1-205ENST00000503057 ATP7BP35670 1465 aa12.75□□□□□ -0.37
LIMCH1-205ENST00000503057 FBXW7Q969H0 707 aa12.75□□□□□ -0.37
LIMCH1-205ENST00000503057 CHPF2Q9P2E5 772 aa12.75□□□□□ -0.37
LIMCH1-205ENST00000503057 AKAP2Q9Y2D5 859 aa12.75□□□□□ -0.37
LIMCH1-205ENST00000503057 NCKAP5LQ9HCH0 1330 aa12.75□□□□□ -0.37
LIMCH1-205ENST00000503057 FKBP4Q02790 459 aaKnown RBP eCLIP12.75□□□□□ -0.37
LIMCH1-205ENST00000503057 IFNL2Q8IZJ0 200 aa12.75□□□□□ -0.37
LIMCH1-205ENST00000503057 CCDC47Q96A33 483 aaKnown RBP12.75□□□□□ -0.37
LIMCH1-205ENST00000503057 EYA1Q99502 592 aa12.75□□□□□ -0.37
LIMCH1-205ENST00000503057 NUP62CLQ9H1M0 184 aa12.75□□□□□ -0.37
LIMCH1-205ENST00000503057 BABAM1Q9NWV8 329 aa12.75□□□□□ -0.37
LIMCH1-205ENST00000503057 MAP3K19Q56UN5 1328 aa12.75□□□□□ -0.37
LIMCH1-205ENST00000503057 MARCH6O60337 910 aa12.75□□□□□ -0.37
LIMCH1-205ENST00000503057 ALDH1L1O75891 902 aa12.75□□□□□ -0.37
LIMCH1-205ENST00000503057 FAM135BQ49AJ0 1406 aa12.75□□□□□ -0.37
LIMCH1-205ENST00000503057 E9PCH4 1651 aa12.75□□□□□ -0.37
LIMCH1-205ENST00000503057 RBM25P49756 843 aaKnown RBP12.75□□□□□ -0.37
LIMCH1-205ENST00000503057 CCDC183Q5T5S1 534 aa12.75□□□□□ -0.37
LIMCH1-205ENST00000503057 JMYQ8N9B5 988 aa12.74□□□□□ -0.37
LIMCH1-205ENST00000503057 HMGB1P09429 215 aaKnown RBP12.74□□□□□ -0.37
LIMCH1-205ENST00000503057 ZSCAN30Q86W11 494 aa12.74□□□□□ -0.37
LIMCH1-205ENST00000503057 PLEKHF1Q96S99 279 aa12.74□□□□□ -0.37
LIMCH1-205ENST00000503057 MAP7D2Q96T17 732 aa12.74□□□□□ -0.37
LIMCH1-205ENST00000503057 CCDC8Q9H0W5 538 aaPredicted RBP12.74□□□□□ -0.37
LIMCH1-205ENST00000503057 RNF17Q9BXT8 1623 aaKnown RBP12.74□□□□□ -0.37
LIMCH1-205ENST00000503057 STARD3NLO95772 234 aa12.74□□□□□ -0.37
LIMCH1-205ENST00000503057 HOXC9P31274 260 aa12.74□□□□□ -0.37
LIMCH1-205ENST00000503057 TSHZ3Q63HK5 1081 aa12.74□□□□□ -0.37
LIMCH1-205ENST00000503057 ARHGEF10O15013 1369 aa12.74□□□□□ -0.37
LIMCH1-205ENST00000503057 HMGN5P82970 282 aaKnown RBP12.74□□□□□ -0.37
LIMCH1-205ENST00000503057 CEBPZQ03701 1054 aaKnown RBP12.74□□□□□ -0.37
LIMCH1-205ENST00000503057 C16orf71Q8IYS4 520 aaPredicted RBP12.74□□□□□ -0.37
LIMCH1-205ENST00000503057 GNL3LQ9NVN8 582 aaKnown RBP12.74□□□□□ -0.37
LIMCH1-205ENST00000503057 NACAP1Q9BZK3 213 aa12.73□□□□□ -0.37
LIMCH1-205ENST00000503057 U3KPZ7 1027 aaPredicted RBP12.73□□□□□ -0.37
LIMCH1-205ENST00000503057 CHL1O00533 1208 aa12.73□□□□□ -0.37
LIMCH1-205ENST00000503057 PES1O00541 588 aaKnown RBP12.73□□□□□ -0.37
LIMCH1-205ENST00000503057 CDKL5O76039 1030 aa12.73□□□□□ -0.37
LIMCH1-205ENST00000503057 DHX8Q14562 1220 aaKnown RBP12.73□□□□□ -0.37
LIMCH1-205ENST00000503057 HOMER1Q86YM7 354 aa12.73□□□□□ -0.37
LIMCH1-205ENST00000503057 RBM33Q96EV2 1170 aaKnown RBP12.73□□□□□ -0.37
LIMCH1-205ENST00000503057 TMX3Q96JJ7 454 aa12.73□□□□□ -0.37
LIMCH1-205ENST00000503057 IMMTQ16891 758 aaKnown RBP12.73□□□□□ -0.37
LIMCH1-205ENST00000503057 KRT24Q2M2I5 525 aa12.73□□□□□ -0.37
LIMCH1-205ENST00000503057 RAB3GAP1Q15042 981 aa12.72□□□□□ -0.37
LIMCH1-205ENST00000503057 ME1P48163 572 aa12.72□□□□□ -0.37
LIMCH1-205ENST00000503057 KIAA0232Q92628 1395 aa12.72□□□□□ -0.37
LIMCH1-205ENST00000503057 TMEM2Q9UHN6 1383 aa12.72□□□□□ -0.37
LIMCH1-205ENST00000503057 SCAND2PQ9GZW5 306 aaPredicted RBP12.72□□□□□ -0.37
LIMCH1-205ENST00000503057 TMOD3Q9NYL9 352 aa12.72□□□□□ -0.37
LIMCH1-205ENST00000503057 MAP3K11Q16584 847 aa12.72□□□□□ -0.37
LIMCH1-205ENST00000503057 AATKQ6ZMQ8 1374 aa12.71□□□□□ -0.37
LIMCH1-205ENST00000503057 SNRPA1P09661 255 aaKnown RBP12.71□□□□□ -0.37
LIMCH1-205ENST00000503057 HMG20BQ9P0W2 317 aa12.71□□□□□ -0.37
LIMCH1-205ENST00000503057 KSR2Q6VAB6 950 aa12.71□□□□□ -0.37
LIMCH1-205ENST00000503057 A0A087WZG4 1122 aa12.71□□□□□ -0.38
LIMCH1-205ENST00000503057 SLC3A2P08195 630 aaKnown RBP12.71□□□□□ -0.38
LIMCH1-205ENST00000503057 TTC41PQ6P2S7 1318 aa12.71□□□□□ -0.38
LIMCH1-205ENST00000503057 ABCC4O15439 1325 aa12.7□□□□□ -0.38
LIMCH1-205ENST00000503057 FAM177BA6PVY3 158 aa12.7□□□□□ -0.38
LIMCH1-205ENST00000503057 IFIT1P09914 478 aaKnown RBP12.7□□□□□ -0.38
LIMCH1-205ENST00000503057 MPHOSPH8Q99549 860 aa12.7□□□□□ -0.38
LIMCH1-205ENST00000503057 SETBP1Q9Y6X0 1596 aa12.7□□□□□ -0.38
LIMCH1-205ENST00000503057 CEP152O94986 1710 aa12.7□□□□□ -0.38
LIMCH1-205ENST00000503057 PLEKHG3A1L390 1219 aa12.7□□□□□ -0.38
LIMCH1-205ENST00000503057 CCDC69A6NI79 296 aa12.7□□□□□ -0.38
LIMCH1-205ENST00000503057 STX6O43752 255 aa12.7□□□□□ -0.38
LIMCH1-205ENST00000503057 TRIM22Q8IYM9 498 aa12.7□□□□□ -0.38
LIMCH1-205ENST00000503057 ABCA9Q8IUA7 1624 aa12.7□□□□□ -0.38
LIMCH1-205ENST00000503057 ABCA6Q8N139 1617 aa12.7□□□□□ -0.38
LIMCH1-205ENST00000503057 IP6K1Q92551 441 aa12.7□□□□□ -0.38
LIMCH1-205ENST00000503057 USP26Q9BXU7 913 aa12.7□□□□□ -0.38
LIMCH1-205ENST00000503057 SPC24Q8NBT2 197 aa12.7□□□□□ -0.38
LIMCH1-205ENST00000503057 GOLGA6L1Q8N7Z2 621 aa12.69□□□□□ -0.38
LIMCH1-205ENST00000503057 ARHGAP31Q2M1Z3 1444 aa12.69□□□□□ -0.38
LIMCH1-205ENST00000503057 CCP110O43303 1012 aa12.69□□□□□ -0.38
LIMCH1-205ENST00000503057 SMC2O95347 1197 aa12.69□□□□□ -0.38
LIMCH1-205ENST00000503057 GJB2P29033 226 aa12.69□□□□□ -0.38
LIMCH1-205ENST00000503057 RRP12Q5JTH9 1297 aaKnown RBP12.69□□□□□ -0.38
LIMCH1-205ENST00000503057 GLI2P10070 1586 aa12.69□□□□□ -0.38
LIMCH1-205ENST00000503057 GRM8O00222 908 aa12.69□□□□□ -0.38
LIMCH1-205ENST00000503057 ZSCAN23Q3MJ62 389 aa12.68□□□□□ -0.38
LIMCH1-205ENST00000503057 METTL24Q5JXM2 366 aa12.68□□□□□ -0.38
LIMCH1-205ENST00000503057 ADGRB3O60242 1522 aa12.68□□□□□ -0.38
LIMCH1-205ENST00000503057 QRICH2Q9H0J4 1663 aa12.68□□□□□ -0.38
LIMCH1-205ENST00000503057 PTCD1O75127 700 aaKnown RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms