RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 FOXK2Q01167 660 aa7.03□□□□□ -1.28
USP54-217ENST00000498213 GAS6Q14393 721 aa7.03□□□□□ -1.28
USP54-217ENST00000498213 PRICKLE2Q7Z3G6 844 aa7.03□□□□□ -1.28
USP54-217ENST00000498213 UACAQ9BZF9 1416 aa7.02□□□□□ -1.29
USP54-217ENST00000498213 MAGI3Q5TCQ9 1506 aa7.02□□□□□ -1.29
USP54-217ENST00000498213 OXLD1Q5BKU9 147 aa7.02□□□□□ -1.29
USP54-217ENST00000498213 SLC27A3Q5K4L6 730 aa7.02□□□□□ -1.29
USP54-217ENST00000498213 SIRT1Q96EB6 747 aa7.02□□□□□ -1.29
USP54-217ENST00000498213 POM121Q96HA1 1249 aa7.02□□□□□ -1.29
USP54-217ENST00000498213 CCDC85AQ96PX6 553 aaPredicted RBP7.02□□□□□ -1.29
USP54-217ENST00000498213 ARHGEF10LQ9HCE6 1279 aa7.02□□□□□ -1.29
USP54-217ENST00000498213 ENAMQ9NRM1 1142 aa7.02□□□□□ -1.29
USP54-217ENST00000498213 RGS17Q9UGC6 210 aaPredicted RBP7.02□□□□□ -1.29
USP54-217ENST00000498213 WRNQ14191 1432 aaPredicted RBP eCLIP7.01□□□□□ -1.29
USP54-217ENST00000498213 A0A1W2PRU2 124 aa7.01□□□□□ -1.29
USP54-217ENST00000498213 RNF144AP50876 292 aaPredicted RBP7.01□□□□□ -1.29
USP54-217ENST00000498213 USP4Q13107 963 aa7.01□□□□□ -1.29
USP54-217ENST00000498213 UHRF1BP1LA0JNW5 1464 aa7□□□□□ -1.29
USP54-217ENST00000498213 IQSEC2Q5JU85 1478 aa7□□□□□ -1.29
USP54-217ENST00000498213 GTF2E1P29083 439 aaPredicted RBP7□□□□□ -1.29
USP54-217ENST00000498213 FOXR1Q6PIV2 292 aa7□□□□□ -1.29
USP54-217ENST00000498213 ZNF837Q96EG3 531 aaPredicted RBP7□□□□□ -1.29
USP54-217ENST00000498213 CDCA7Q9BWT1 371 aaPredicted RBP7□□□□□ -1.29
USP54-217ENST00000498213 OSBPL3Q9H4L5 887 aa7□□□□□ -1.29
USP54-217ENST00000498213 RAB6BQ9NRW1 208 aa7□□□□□ -1.29
USP54-217ENST00000498213 MBIPQ9NS73 344 aa7□□□□□ -1.29
USP54-217ENST00000498213 ERICH3Q5RHP9 1530 aa7□□□□□ -1.29
USP54-217ENST00000498213 PTPRTO14522 1441 aa7□□□□□ -1.29
USP54-217ENST00000498213 ZNF335Q9H4Z2 1342 aaPredicted RBP7□□□□□ -1.29
USP54-217ENST00000498213 WDR7Q9Y4E6 1490 aa6.99□□□□□ -1.29
USP54-217ENST00000498213 GPR25O00155 361 aa6.99□□□□□ -1.29
USP54-217ENST00000498213 GNRH1P01148 92 aa6.99□□□□□ -1.29
USP54-217ENST00000498213 GPC1P35052 558 aa6.99□□□□□ -1.29
USP54-217ENST00000498213 CLN3Q13286 438 aa6.99□□□□□ -1.29
USP54-217ENST00000498213 MAP7D1Q3KQU3 841 aa6.99□□□□□ -1.29
USP54-217ENST00000498213 RIPOR1Q6ZS17 1223 aa6.99□□□□□ -1.29
USP54-217ENST00000498213 TRIM22Q8IYM9 498 aa6.99□□□□□ -1.29
USP54-217ENST00000498213 GMCL1Q96IK5 515 aa6.99□□□□□ -1.29
USP54-217ENST00000498213 ARAP3Q8WWN8 1544 aa6.99□□□□□ -1.29
USP54-217ENST00000498213 KDM5BQ9UGL1 1544 aa6.99□□□□□ -1.29
USP54-217ENST00000498213 STRCQ7RTU9 1775 aa6.99□□□□□ -1.29
USP54-217ENST00000498213 IGF1RP08069 1367 aa6.98□□□□□ -1.29
USP54-217ENST00000498213 TRAK2O60296 914 aa6.98□□□□□ -1.29
USP54-217ENST00000498213 ESCO1Q5FWF5 840 aa6.98□□□□□ -1.29
USP54-217ENST00000498213 PLPP7Q8NBV4 271 aa6.98□□□□□ -1.29
USP54-217ENST00000498213 CARMIL2Q6F5E8 1435 aa6.98□□□□□ -1.29
USP54-217ENST00000498213 PHF20L1A8MW92 1017 aa6.97□□□□□ -1.29
USP54-217ENST00000498213 DBN1Q16643 649 aa6.97□□□□□ -1.29
USP54-217ENST00000498213 POTEAQ6S8J7 498 aa6.97□□□□□ -1.29
USP54-217ENST00000498213 PHTF2Q8N3S3 785 aa6.97□□□□□ -1.29
USP54-217ENST00000498213 CNTNAP5Q8WYK1 1306 aa6.97□□□□□ -1.29
USP54-217ENST00000498213 SRCAPQ6ZRS2 3230 aa6.97□□□□□ -1.29
USP54-217ENST00000498213 SKIP12755 728 aa6.96□□□□□ -1.3
USP54-217ENST00000498213 TSGA10IPQ3SY00 556 aa6.96□□□□□ -1.3
USP54-217ENST00000498213 NEDD1Q8NHV4 660 aa6.96□□□□□ -1.3
USP54-217ENST00000498213 CNKSR1Q969H4 720 aa6.96□□□□□ -1.3
USP54-217ENST00000498213 GTPBP3Q969Y2 492 aaKnown RBP6.96□□□□□ -1.3
USP54-217ENST00000498213 GAS2L1Q99501 681 aaPredicted RBP6.96□□□□□ -1.3
USP54-217ENST00000498213 ZCCHC11Q5TAX3 1644 aaKnown RBP6.95□□□□□ -1.3
USP54-217ENST00000498213 H7C1W4 665 aa6.95□□□□□ -1.3
USP54-217ENST00000498213 BCRP11274 1271 aa6.95□□□□□ -1.3
USP54-217ENST00000498213 POU4F2Q12837 409 aa6.95□□□□□ -1.3
USP54-217ENST00000498213 EML3Q32P44 896 aa6.95□□□□□ -1.3
USP54-217ENST00000498213 PODNQ7Z5L7 613 aa6.95□□□□□ -1.3
USP54-217ENST00000498213 BEND7Q8N7W2 519 aaPredicted RBP6.95□□□□□ -1.3
USP54-217ENST00000498213 DCAF5Q96JK2 942 aa6.95□□□□□ -1.3
USP54-217ENST00000498213 ESYT1Q9BSJ8 1104 aa6.95□□□□□ -1.3
USP54-217ENST00000498213 DYRK1BQ9Y463 629 aa6.95□□□□□ -1.3
USP54-217ENST00000498213 UHRF1BP1Q6BDS2 1440 aa6.94□□□□□ -1.3
USP54-217ENST00000498213 POGZQ7Z3K3 1410 aa6.94□□□□□ -1.3
USP54-217ENST00000498213 CFAP43Q8NDM7 1665 aa6.94□□□□□ -1.3
USP54-217ENST00000498213 ARID3CA6NKF2 412 aa6.94□□□□□ -1.3
USP54-217ENST00000498213 MSTNO14793 375 aa6.94□□□□□ -1.3
USP54-217ENST00000498213 PLA2G4EQ3MJ16 856 aa6.94□□□□□ -1.3
USP54-217ENST00000498213 GNASQ5JWF2 1037 aa6.94□□□□□ -1.3
USP54-217ENST00000498213 TMEM214Q6NUQ4 689 aaKnown RBP6.94□□□□□ -1.3
USP54-217ENST00000498213 TAS1R3Q7RTX0 852 aa6.94□□□□□ -1.3
USP54-217ENST00000498213 PROSER2Q86WR7 435 aaPredicted RBP6.94□□□□□ -1.3
USP54-217ENST00000498213 CLUAP1Q96AJ1 413 aa6.94□□□□□ -1.3
USP54-217ENST00000498213 TRERF1Q96PN7 1200 aa6.94□□□□□ -1.3
USP54-217ENST00000498213 ZSCAN10Q96SZ4 725 aaPredicted RBP6.94□□□□□ -1.3
USP54-217ENST00000498213 POM121CA8CG34 1229 aa6.93□□□□□ -1.3
USP54-217ENST00000498213 PIK3CDO00329 1044 aa6.93□□□□□ -1.3
USP54-217ENST00000498213 TOM1O60784 492 aa6.93□□□□□ -1.3
USP54-217ENST00000498213 IL2RAP01589 272 aa6.93□□□□□ -1.3
USP54-217ENST00000498213 PSME1Q06323 249 aa6.93□□□□□ -1.3
USP54-217ENST00000498213 ACDQ96AP0 544 aa6.93□□□□□ -1.3
USP54-217ENST00000498213 ALG2Q9H553 416 aa6.93□□□□□ -1.3
USP54-217ENST00000498213 NOD1Q9Y239 953 aa6.93□□□□□ -1.3
USP54-217ENST00000498213 WASLO00401 505 aaPredicted RBP6.92□□□□□ -1.3
USP54-217ENST00000498213 MX2P20592 715 aa6.92□□□□□ -1.3
USP54-217ENST00000498213 CENPCQ03188 943 aa6.92□□□□□ -1.3
USP54-217ENST00000498213 TLR1Q15399 786 aa6.92□□□□□ -1.3
USP54-217ENST00000498213 HDGFL1Q5TGJ6 251 aa6.92□□□□□ -1.3
USP54-217ENST00000498213 NBPF10Q6P3W6 841 aaKnown RBP6.92□□□□□ -1.3
USP54-217ENST00000498213 NBPF15Q8N660 670 aa6.92□□□□□ -1.3
USP54-217ENST00000498213 NFATC2IPQ8NCF5 419 aa6.92□□□□□ -1.3
USP54-217ENST00000498213 GRIP2Q9C0E4 1043 aa6.92□□□□□ -1.3
USP54-217ENST00000498213 TIMMDC1Q9NPL8 285 aa6.92□□□□□ -1.3
USP54-217ENST00000498213 CHIC2Q9UKJ5 165 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms