RNA–Protein interactions for RNA: ENST00000494323.5

PTCD3-219, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 540 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-219ENST00000494323 TSPY4P0CV99 314 aa8.14□□□□□ -1.11
PTCD3-219ENST00000494323 TSPY10P0CW01 314 aa8.14□□□□□ -1.11
PTCD3-219ENST00000494323 BMP1P13497 986 aa8.14□□□□□ -1.11
PTCD3-219ENST00000494323 THEMISQ8N1K5 641 aaPredicted RBP8.14□□□□□ -1.11
PTCD3-219ENST00000494323 C1QTNF2Q9BXJ5 285 aa8.14□□□□□ -1.11
PTCD3-219ENST00000494323 CARD14Q9BXL6 1004 aa8.14□□□□□ -1.11
PTCD3-219ENST00000494323 PCDHB9Q9Y5E1 797 aa8.14□□□□□ -1.11
PTCD3-219ENST00000494323 MYO3AQ8NEV4 1616 aa8.14□□□□□ -1.11
PTCD3-219ENST00000494323 A2ML1A8K2U0 1454 aa8.13□□□□□ -1.11
PTCD3-219ENST00000494323 TNRQ92752 1358 aa8.13□□□□□ -1.11
PTCD3-219ENST00000494323 LOC105371045A0A1W2PR82 267 aa8.13□□□□□ -1.11
PTCD3-219ENST00000494323 WDR4P57081 412 aaKnown RBP8.13□□□□□ -1.11
PTCD3-219ENST00000494323 NR5A1Q13285 461 aa8.13□□□□□ -1.11
PTCD3-219ENST00000494323 DNMT1P26358 1616 aaKnown RBP8.13□□□□□ -1.11
PTCD3-219ENST00000494323 RTEL1-TNFRSF6BF6WH68 1400 aa8.12□□□□□ -1.11
PTCD3-219ENST00000494323 ADGBQ8N7X0 1667 aa8.12□□□□□ -1.11
PTCD3-219ENST00000494323 CFAP65Q6ZU64 1925 aaKnown RBP8.12□□□□□ -1.11
PTCD3-219ENST00000494323 SNRPBP14678 240 aaKnown RBP8.12□□□□□ -1.11
PTCD3-219ENST00000494323 TIMP2P16035 220 aa8.12□□□□□ -1.11
PTCD3-219ENST00000494323 ERFEQ4G0M1 354 aa8.12□□□□□ -1.11
PTCD3-219ENST00000494323 VASH1Q7L8A9 365 aaPredicted RBP8.12□□□□□ -1.11
PTCD3-219ENST00000494323 DZIP3Q86Y13 1208 aaKnown RBP8.12□□□□□ -1.11
PTCD3-219ENST00000494323 TIAM1Q13009 1591 aa8.12□□□□□ -1.11
PTCD3-219ENST00000494323 MIA2Q96PC5 1412 aa8.12□□□□□ -1.11
PTCD3-219ENST00000494323 TRIM46Q7Z4K8 759 aa8.11□□□□□ -1.11
PTCD3-219ENST00000494323 TRMT44Q8IYL2 757 aaKnown RBP8.11□□□□□ -1.11
PTCD3-219ENST00000494323 PPP1R12CQ9BZL4 782 aa8.11□□□□□ -1.11
PTCD3-219ENST00000494323 CDV3Q9UKY7 258 aaKnown RBP8.11□□□□□ -1.11
PTCD3-219ENST00000494323 MAP4K5Q9Y4K4 846 aa8.11□□□□□ -1.11
PTCD3-219ENST00000494323 ZNF142P52746 1687 aaPredicted RBP8.11□□□□□ -1.11
PTCD3-219ENST00000494323 CEP162Q5TB80 1403 aa8.11□□□□□ -1.11
PTCD3-219ENST00000494323 FSHRP23945 695 aa8.1□□□□□ -1.11
PTCD3-219ENST00000494323 GRM5P41594 1212 aa8.1□□□□□ -1.11
PTCD3-219ENST00000494323 TRIM26Q12899 539 aaPredicted RBP8.1□□□□□ -1.11
PTCD3-219ENST00000494323 NFATC2IPQ8NCF5 419 aa8.1□□□□□ -1.11
PTCD3-219ENST00000494323 SLC10A4Q96EP9 437 aa8.1□□□□□ -1.11
PTCD3-219ENST00000494323 CEP126Q9P2H0 1117 aa8.1□□□□□ -1.11
PTCD3-219ENST00000494323 NCOA2Q15596 1464 aa8.1□□□□□ -1.11
PTCD3-219ENST00000494323 SHANK2Q9UPX8 1470 aa8.1□□□□□ -1.11
PTCD3-219ENST00000494323 ZIC2O95409 532 aaPredicted RBP8.09□□□□□ -1.11
PTCD3-219ENST00000494323 NR3C2P08235 984 aa8.09□□□□□ -1.11
PTCD3-219ENST00000494323 SLFNL1Q499Z3 407 aa8.09□□□□□ -1.11
PTCD3-219ENST00000494323 KANK4Q5T7N3 995 aaPredicted RBP8.09□□□□□ -1.11
PTCD3-219ENST00000494323 UCN2Q96RP3 112 aa8.09□□□□□ -1.11
PTCD3-219ENST00000494323 PZPP20742 1482 aa8.08□□□□□ -1.12
PTCD3-219ENST00000494323 CAMSAP2Q08AD1 1489 aa8.08□□□□□ -1.12
PTCD3-219ENST00000494323 CCDC141Q6ZP82 1450 aa8.08□□□□□ -1.12
PTCD3-219ENST00000494323 PALM3A6NDB9 673 aaPredicted RBP8.08□□□□□ -1.12
PTCD3-219ENST00000494323 SCARF1Q14162 830 aa8.08□□□□□ -1.12
PTCD3-219ENST00000494323 NBPF20Q3BBV1 942 aa8.08□□□□□ -1.12
PTCD3-219ENST00000494323 MRPL14Q6P1L8 145 aaKnown RBP8.08□□□□□ -1.12
PTCD3-219ENST00000494323 ITPKCQ96DU7 683 aa8.08□□□□□ -1.12
PTCD3-219ENST00000494323 KLF16Q9BXK1 252 aaPredicted RBP8.08□□□□□ -1.12
PTCD3-219ENST00000494323 EHBP1L1Q8N3D4 1523 aa8.08□□□□□ -1.12
PTCD3-219ENST00000494323 NEURL4Q96JN8 1562 aa8.07□□□□□ -1.12
PTCD3-219ENST00000494323 NPHP4O75161 1426 aaPredicted RBP8.07□□□□□ -1.12
PTCD3-219ENST00000494323 ATP9BO43861 1147 aa8.07□□□□□ -1.12
PTCD3-219ENST00000494323 PPP1R15AO75807 674 aaPredicted RBP8.07□□□□□ -1.12
PTCD3-219ENST00000494323 LTKP29376 864 aa8.07□□□□□ -1.12
PTCD3-219ENST00000494323 TREML4Q6UXN2 200 aa8.07□□□□□ -1.12
PTCD3-219ENST00000494323 TXNDC2Q86VQ3 553 aa8.07□□□□□ -1.12
PTCD3-219ENST00000494323 ZFAND3Q9H8U3 227 aa8.07□□□□□ -1.12
PTCD3-219ENST00000494323 PODXL2Q9NZ53 605 aa8.07□□□□□ -1.12
PTCD3-219ENST00000494323 TFIP11Q9UBB9 837 aaKnown RBP8.07□□□□□ -1.12
PTCD3-219ENST00000494323 UGGT1Q9NYU2 1555 aa8.06□□□□□ -1.12
PTCD3-219ENST00000494323 CFAP70Q5T0N1 1121 aa8.06□□□□□ -1.12
PTCD3-219ENST00000494323 RNF20Q5VTR2 975 aa8.06□□□□□ -1.12
PTCD3-219ENST00000494323 CCDC125Q86Z20 511 aa8.06□□□□□ -1.12
PTCD3-219ENST00000494323 RNF135Q8IUD6 432 aa8.06□□□□□ -1.12
PTCD3-219ENST00000494323 CCDC116Q8IYX3 515 aa8.06□□□□□ -1.12
PTCD3-219ENST00000494323 ZFP42Q96MM3 310 aa8.06□□□□□ -1.12
PTCD3-219ENST00000494323 PURBQ96QR8 312 aaKnown RBP8.06□□□□□ -1.12
PTCD3-219ENST00000494323 RRP7BPQ9NSQ0 103 aa8.06□□□□□ -1.12
PTCD3-219ENST00000494323 CPS1P31327 1500 aa8.06□□□□□ -1.12
PTCD3-219ENST00000494323 KDM5DQ9BY66 1539 aa8.06□□□□□ -1.12
PTCD3-219ENST00000494323 FAM135AQ9P2D6 1515 aa8.06□□□□□ -1.12
PTCD3-219ENST00000494323 POLR1AO95602 1720 aaPredicted RBP8.06□□□□□ -1.12
PTCD3-219ENST00000494323 WFS1O76024 890 aa8.05□□□□□ -1.12
PTCD3-219ENST00000494323 TBC1D9Q6ZT07 1266 aa8.05□□□□□ -1.12
PTCD3-219ENST00000494323 SEPT12Q8IYM1 358 aa8.05□□□□□ -1.12
PTCD3-219ENST00000494323 PHTF2Q8N3S3 785 aa8.05□□□□□ -1.12
PTCD3-219ENST00000494323 MAFBQ9Y5Q3 323 aaPredicted RBP8.05□□□□□ -1.12
PTCD3-219ENST00000494323 EMILIN1Q9Y6C2 1016 aa8.05□□□□□ -1.12
PTCD3-219ENST00000494323 NLRP1Q9C000 1473 aa8.05□□□□□ -1.12
PTCD3-219ENST00000494323 VWDEQ8N2E2 1590 aa8.05□□□□□ -1.12
PTCD3-219ENST00000494323 PIK3CDO00329 1044 aa8.04□□□□□ -1.12
PTCD3-219ENST00000494323 LZTS3O60299 673 aaPredicted RBP8.04□□□□□ -1.12
PTCD3-219ENST00000494323 SKIP12755 728 aa8.04□□□□□ -1.12
PTCD3-219ENST00000494323 LMOD1P29536 600 aaPredicted RBP8.04□□□□□ -1.12
PTCD3-219ENST00000494323 MAP7D1Q3KQU3 841 aa8.04□□□□□ -1.12
PTCD3-219ENST00000494323 LCE2AQ5TA79 106 aaPredicted RBP8.04□□□□□ -1.12
PTCD3-219ENST00000494323 PBXIP1Q96AQ6 731 aa8.04□□□□□ -1.12
PTCD3-219ENST00000494323 MED14O60244 1454 aa8.04□□□□□ -1.12
PTCD3-219ENST00000494323 STRCP1A6NGW2 1772 aa8.03□□□□□ -1.12
PTCD3-219ENST00000494323 MED1Q15648 1581 aaPredicted RBP8.03□□□□□ -1.12
PTCD3-219ENST00000494323 ESPNB1AK53 854 aa8.03□□□□□ -1.12
PTCD3-219ENST00000494323 GIGYF1O75420 1035 aaPredicted RBP8.03□□□□□ -1.12
PTCD3-219ENST00000494323 UPP2O95045 317 aa8.03□□□□□ -1.12
PTCD3-219ENST00000494323 PDIA4P13667 645 aaKnown RBP8.03□□□□□ -1.12
PTCD3-219ENST00000494323 PLEKHM2Q8IWE5 1019 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 1016.1 ms