RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 CEP350Q5VT06 3117 aa16.63■□□□□ 0.25
UPF3A-210ENST00000493727 NUDT7P0C024 238 aa16.63■□□□□ 0.25
UPF3A-210ENST00000493727 LY75O60449 1722 aa16.62■□□□□ 0.25
UPF3A-210ENST00000493727 ANKRD24Q8TF21 1146 aa16.62■□□□□ 0.25
UPF3A-210ENST00000493727 DOT1LQ8TEK3 1739 aa16.62■□□□□ 0.25
UPF3A-210ENST00000493727 EVI5O60447 810 aa16.61■□□□□ 0.25
UPF3A-210ENST00000493727 COG3Q96JB2 828 aa16.61■□□□□ 0.25
UPF3A-210ENST00000493727 IP6K1Q92551 441 aa16.6■□□□□ 0.25
UPF3A-210ENST00000493727 ANKRD36BQ8N2N9 1353 aa16.6■□□□□ 0.25
UPF3A-210ENST00000493727 C1QTNF8P60827 252 aa16.59■□□□□ 0.25
UPF3A-210ENST00000493727 PDIA6Q15084 440 aa16.59■□□□□ 0.25
UPF3A-210ENST00000493727 DDX10Q13206 875 aaKnown RBP16.58■□□□□ 0.24
UPF3A-210ENST00000493727 MARVELD3Q96A59 401 aa16.58■□□□□ 0.24
UPF3A-210ENST00000493727 PNPLA7Q6ZV29 1317 aa16.58■□□□□ 0.24
UPF3A-210ENST00000493727 RGPD2P0DJD1 1756 aa16.58■□□□□ 0.24
UPF3A-210ENST00000493727 NSD2O96028 1365 aa16.57■□□□□ 0.24
UPF3A-210ENST00000493727 SPDYE16A6NNV3 312 aaPredicted RBP16.57■□□□□ 0.24
UPF3A-210ENST00000493727 SLC27A3Q5K4L6 730 aa16.57■□□□□ 0.24
UPF3A-210ENST00000493727 SLC16A10Q8TF71 515 aa16.57■□□□□ 0.24
UPF3A-210ENST00000493727 SENP3-EIF4A1A0A087X0R7 540 aa16.56■□□□□ 0.24
UPF3A-210ENST00000493727 RTL1A6NKG5 1358 aa16.55■□□□□ 0.24
UPF3A-210ENST00000493727 AMPHP49418 695 aa16.55■□□□□ 0.24
UPF3A-210ENST00000493727 KIF20BQ96Q89 1820 aa16.54■□□□□ 0.24
UPF3A-210ENST00000493727 MAP3K19Q56UN5 1328 aa16.54■□□□□ 0.24
UPF3A-210ENST00000493727 HOXC9P31274 260 aa16.53■□□□□ 0.24
UPF3A-210ENST00000493727 EMP3P54852 163 aa16.53■□□□□ 0.24
UPF3A-210ENST00000493727 GPR162Q16538 588 aa16.53■□□□□ 0.24
UPF3A-210ENST00000493727 LTV1Q96GA3 475 aaPredicted RBP16.53■□□□□ 0.24
UPF3A-210ENST00000493727 LHX6Q9UPM6 363 aa16.53■□□□□ 0.24
UPF3A-210ENST00000493727 MEGF6O75095 1541 aa16.53■□□□□ 0.24
UPF3A-210ENST00000493727 POLD1P28340 1107 aa16.52■□□□□ 0.24
UPF3A-210ENST00000493727 NLGN2Q8NFZ4 835 aa16.51■□□□□ 0.23
UPF3A-210ENST00000493727 DDX54Q8TDD1 881 aaKnown RBP16.51■□□□□ 0.23
UPF3A-210ENST00000493727 SMG6Q86US8 1419 aaKnown RBP16.51■□□□□ 0.23
UPF3A-210ENST00000493727 FYB1O15117 783 aa16.5■□□□□ 0.23
UPF3A-210ENST00000493727 KCNQ4P56696 695 aa16.5■□□□□ 0.23
UPF3A-210ENST00000493727 PANK3Q9H999 370 aa16.5■□□□□ 0.23
UPF3A-210ENST00000493727 C5P01031 1676 aa16.5■□□□□ 0.23
UPF3A-210ENST00000493727 TAF1LQ8IZX4 1826 aa16.49■□□□□ 0.23
UPF3A-210ENST00000493727 PRIM1P49642 420 aaKnown RBP16.49■□□□□ 0.23
UPF3A-210ENST00000493727 TFCP2L1Q9NZI6 479 aa16.49■□□□□ 0.23
UPF3A-210ENST00000493727 KIF24Q5T7B8 1368 aa16.49■□□□□ 0.23
UPF3A-210ENST00000493727 CGNL1Q0VF96 1302 aa16.48■□□□□ 0.23
UPF3A-210ENST00000493727 GIGYF1O75420 1035 aaPredicted RBP16.48■□□□□ 0.23
UPF3A-210ENST00000493727 DIEXFQ68CQ4 756 aaKnown RBP16.48■□□□□ 0.23
UPF3A-210ENST00000493727 GGNBP2Q9H3C7 697 aa16.48■□□□□ 0.23
UPF3A-210ENST00000493727 YBX3P16989 372 aaKnown RBP eCLIP16.47■□□□□ 0.23
UPF3A-210ENST00000493727 ZCRB1Q8TBF4 217 aaKnown RBP16.47■□□□□ 0.23
UPF3A-210ENST00000493727 SYTL4Q96C24 671 aaPredicted RBP16.47■□□□□ 0.23
UPF3A-210ENST00000493727 RRS1Q15050 365 aaKnown RBP16.46■□□□□ 0.23
UPF3A-210ENST00000493727 POTEB3A0JP26 581 aa16.45■□□□□ 0.22
UPF3A-210ENST00000493727 FBLN1P23142 703 aa16.45■□□□□ 0.22
UPF3A-210ENST00000493727 POTEBQ6S5H4 581 aa16.45■□□□□ 0.22
UPF3A-210ENST00000493727 CCNL1Q9UK58 526 aaPredicted RBP16.45■□□□□ 0.22
UPF3A-210ENST00000493727 KNSTRNQ9Y448 316 aa16.45■□□□□ 0.22
UPF3A-210ENST00000493727 INSRP06213 1382 aa16.45■□□□□ 0.22
UPF3A-210ENST00000493727 FLT4P35916 1363 aa16.45■□□□□ 0.22
UPF3A-210ENST00000493727 TOGARAM1Q9Y4F4 1720 aa16.45■□□□□ 0.22
UPF3A-210ENST00000493727 NSD3Q9BZ95 1437 aa16.45■□□□□ 0.22
UPF3A-210ENST00000493727 FAM205CA6NFA0 338 aa16.44■□□□□ 0.22
UPF3A-210ENST00000493727 COL23A1Q86Y22 540 aaPredicted RBP16.44■□□□□ 0.22
UPF3A-210ENST00000493727 RAPGEF4Q8WZA2 1011 aa16.44■□□□□ 0.22
UPF3A-210ENST00000493727 ITGB4P16144 1822 aa16.42■□□□□ 0.22
UPF3A-210ENST00000493727 UBR3Q6ZT12 1888 aa16.42■□□□□ 0.22
UPF3A-210ENST00000493727 SEMA3EO15041 775 aa16.42■□□□□ 0.22
UPF3A-210ENST00000493727 GRIN3BO60391 1043 aa16.42■□□□□ 0.22
UPF3A-210ENST00000493727 HMGB2P26583 209 aaKnown RBP16.42■□□□□ 0.22
UPF3A-210ENST00000493727 FOSBP53539 338 aa16.42■□□□□ 0.22
UPF3A-210ENST00000493727 CNGB1Q14028 1251 aaPredicted RBP16.42■□□□□ 0.22
UPF3A-210ENST00000493727 NBPF6Q5VWK0 638 aa16.42■□□□□ 0.22
UPF3A-210ENST00000493727 NBPF4Q96M43 638 aa16.42■□□□□ 0.22
UPF3A-210ENST00000493727 MAP2P11137 1827 aaKnown RBP16.42■□□□□ 0.22
UPF3A-210ENST00000493727 ADCY9O60503 1353 aa16.41■□□□□ 0.22
UPF3A-210ENST00000493727 TATP17735 454 aaPredicted RBP16.41■□□□□ 0.22
UPF3A-210ENST00000493727 VARS2Q5ST30 1063 aaKnown RBP16.41■□□□□ 0.22
UPF3A-210ENST00000493727 HS3ST6Q96QI5 342 aa16.41■□□□□ 0.22
UPF3A-210ENST00000493727 ATP10DQ9P241 1426 aa16.41■□□□□ 0.22
UPF3A-210ENST00000493727 ANKRD26Q9UPS8 1709 aa16.41■□□□□ 0.22
UPF3A-210ENST00000493727 C4BP0C0L5 1744 aa16.4■□□□□ 0.22
UPF3A-210ENST00000493727 PKD1L3Q7Z443 1732 aa16.4■□□□□ 0.22
UPF3A-210ENST00000493727 POTEGQ6S5H5 508 aa16.4■□□□□ 0.22
UPF3A-210ENST00000493727 DDX12PQ92771 950 aa16.4■□□□□ 0.22
UPF3A-210ENST00000493727 PCDH11XQ9BZA7 1347 aa16.4■□□□□ 0.22
UPF3A-210ENST00000493727 PCDH11YQ9BZA8 1340 aa16.4■□□□□ 0.22
UPF3A-210ENST00000493727 POTEMA6NI47 508 aa16.39■□□□□ 0.21
UPF3A-210ENST00000493727 HSP90AB2PQ58FF8 381 aa16.39■□□□□ 0.21
UPF3A-210ENST00000493727 CARD14Q9BXL6 1004 aa16.39■□□□□ 0.21
UPF3A-210ENST00000493727 ANP32CO43423 234 aa16.38■□□□□ 0.21
UPF3A-210ENST00000493727 MLLT3P42568 568 aaPredicted RBP16.38■□□□□ 0.21
UPF3A-210ENST00000493727 MSL1Q68DK7 614 aa16.38■□□□□ 0.21
UPF3A-210ENST00000493727 USHBP1Q8N6Y0 703 aa16.38■□□□□ 0.21
UPF3A-210ENST00000493727 PCDHGA10Q9Y5H3 936 aa16.38■□□□□ 0.21
UPF3A-210ENST00000493727 PALLDQ8WX93 1383 aa16.38■□□□□ 0.21
UPF3A-210ENST00000493727 TESPA1A2RU30 521 aaPredicted RBP16.37■□□□□ 0.21
UPF3A-210ENST00000493727 PHF14O94880 888 aa16.37■□□□□ 0.21
UPF3A-210ENST00000493727 IFFO2Q5TF58 517 aa16.37■□□□□ 0.21
UPF3A-210ENST00000493727 ZNF454Q8N9F8 522 aa16.37■□□□□ 0.21
UPF3A-210ENST00000493727 CD2APQ9Y5K6 639 aa16.37■□□□□ 0.21
UPF3A-210ENST00000493727 PER1O15534 1290 aaPredicted RBP16.36■□□□□ 0.21
UPF3A-210ENST00000493727 CC2D1BQ5T0F9 858 aaKnown RBP16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms