RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 ATG3Q9NT62 314 aa12.29□□□□□ -0.44
USP54-214ENST00000492357 GTF3C3Q9Y5Q9 886 aa12.29□□□□□ -0.44
USP54-214ENST00000492357 ABCC4O15439 1325 aa12.29□□□□□ -0.44
USP54-214ENST00000492357 KCNQ3O43525 872 aa12.28□□□□□ -0.44
USP54-214ENST00000492357 STARD3NLO95772 234 aa12.28□□□□□ -0.44
USP54-214ENST00000492357 DDX58O95786 925 aaKnown RBP12.28□□□□□ -0.44
USP54-214ENST00000492357 TRIM27P14373 513 aa12.28□□□□□ -0.44
USP54-214ENST00000492357 PRIM1P49642 420 aaKnown RBP12.28□□□□□ -0.44
USP54-214ENST00000492357 KRT24Q2M2I5 525 aa12.28□□□□□ -0.44
USP54-214ENST00000492357 KRT27Q7Z3Y8 459 aa12.28□□□□□ -0.44
USP54-214ENST00000492357 FTSJ3Q8IY81 847 aaKnown RBP12.28□□□□□ -0.44
USP54-214ENST00000492357 NOB1Q9ULX3 412 aaKnown RBP12.28□□□□□ -0.44
USP54-214ENST00000492357 DDX19BQ9UMR2 479 aa12.28□□□□□ -0.44
USP54-214ENST00000492357 RREB1Q92766 1687 aa12.28□□□□□ -0.44
USP54-214ENST00000492357 BRWD3Q6RI45 1802 aa12.27□□□□□ -0.44
USP54-214ENST00000492357 FLIIQ13045 1269 aa12.27□□□□□ -0.45
USP54-214ENST00000492357 SLC39A6Q13433 755 aa12.27□□□□□ -0.45
USP54-214ENST00000492357 FKBP8Q14318 412 aa12.27□□□□□ -0.45
USP54-214ENST00000492357 FRAT1Q92837 279 aaPredicted RBP12.27□□□□□ -0.45
USP54-214ENST00000492357 BCL11BQ9C0K0 894 aaPredicted RBP12.27□□□□□ -0.45
USP54-214ENST00000492357 PPP4R2Q9NY27 417 aa12.27□□□□□ -0.45
USP54-214ENST00000492357 BTAF1O14981 1849 aa12.27□□□□□ -0.45
USP54-214ENST00000492357 LY75O60449 1722 aa12.26□□□□□ -0.45
USP54-214ENST00000492357 TJP1Q07157 1748 aa12.26□□□□□ -0.45
USP54-214ENST00000492357 RGPD3A6NKT7 1758 aaPredicted RBP12.26□□□□□ -0.45
USP54-214ENST00000492357 RGPD4Q7Z3J3 1758 aa12.26□□□□□ -0.45
USP54-214ENST00000492357 RGL2O15211 777 aa12.26□□□□□ -0.45
USP54-214ENST00000492357 CCT4P50991 539 aaKnown RBP12.26□□□□□ -0.45
USP54-214ENST00000492357 INTS3Q68E01 1043 aaKnown RBP12.26□□□□□ -0.45
USP54-214ENST00000492357 BCL2L13Q9BXK5 485 aa12.26□□□□□ -0.45
USP54-214ENST00000492357 PALLDQ8WX93 1383 aa12.26□□□□□ -0.45
USP54-214ENST00000492357 RGS12O14924 1447 aa12.26□□□□□ -0.45
USP54-214ENST00000492357 ATP10DQ9P241 1426 aa12.26□□□□□ -0.45
USP54-214ENST00000492357 MVPQ14764 893 aaKnown RBP12.25□□□□□ -0.45
USP54-214ENST00000492357 SYTL4Q96C24 671 aaPredicted RBP12.25□□□□□ -0.45
USP54-214ENST00000492357 ASAP1Q9ULH1 1129 aa12.25□□□□□ -0.45
USP54-214ENST00000492357 COL5A3P25940 1745 aaPredicted RBP12.25□□□□□ -0.45
USP54-214ENST00000492357 EIF2S2P20042 333 aaKnown RBP12.24□□□□□ -0.45
USP54-214ENST00000492357 PDIA6Q15084 440 aa12.24□□□□□ -0.45
USP54-214ENST00000492357 CHPF2Q9P2E5 772 aa12.24□□□□□ -0.45
USP54-214ENST00000492357 HDAC5Q9UQL6 1122 aa12.24□□□□□ -0.45
USP54-214ENST00000492357 KAT6BQ8WYB5 2073 aa12.23□□□□□ -0.45
USP54-214ENST00000492357 LOC102724428A0A0B4J2F2 783 aa12.23□□□□□ -0.45
USP54-214ENST00000492357 PLIN1O60240 522 aa12.23□□□□□ -0.45
USP54-214ENST00000492357 SIK1P57059 783 aa12.23□□□□□ -0.45
USP54-214ENST00000492357 FKBP5Q13451 457 aaPredicted RBP12.23□□□□□ -0.45
USP54-214ENST00000492357 PTCD1O75127 700 aaKnown RBP12.22□□□□□ -0.45
USP54-214ENST00000492357 IL6STP40189 918 aaPredicted RBP12.22□□□□□ -0.45
USP54-214ENST00000492357 RC3H1Q5TC82 1133 aaKnown RBP12.22□□□□□ -0.45
USP54-214ENST00000492357 KSR2Q6VAB6 950 aa12.22□□□□□ -0.45
USP54-214ENST00000492357 LRP10Q7Z4F1 713 aa12.22□□□□□ -0.45
USP54-214ENST00000492357 RGS17Q9UGC6 210 aaPredicted RBP12.22□□□□□ -0.45
USP54-214ENST00000492357 USP16Q9Y5T5 823 aa12.22□□□□□ -0.45
USP54-214ENST00000492357 CNTNAP4Q9C0A0 1308 aa12.21□□□□□ -0.45
USP54-214ENST00000492357 ALDH1L1O75891 902 aa12.21□□□□□ -0.45
USP54-214ENST00000492357 CYP19A1P11511 503 aaPredicted RBP12.21□□□□□ -0.45
USP54-214ENST00000492357 SLC27A3Q5K4L6 730 aa12.21□□□□□ -0.45
USP54-214ENST00000492357 CLUAP1Q96AJ1 413 aa12.21□□□□□ -0.45
USP54-214ENST00000492357 ACSBG1Q96GR2 724 aa12.21□□□□□ -0.45
USP54-214ENST00000492357 RBM42Q9BTD8 480 aaKnown RBP12.21□□□□□ -0.45
USP54-214ENST00000492357 U3KPZ7 1027 aaPredicted RBP12.21□□□□□ -0.45
USP54-214ENST00000492357 PLSCR1O15162 318 aa12.2□□□□□ -0.46
USP54-214ENST00000492357 C20orf194Q5TEA3 1177 aa12.2□□□□□ -0.46
USP54-214ENST00000492357 TMEM57Q8N5G2 664 aa12.2□□□□□ -0.46
USP54-214ENST00000492357 PANK1Q8TE04 598 aa12.2□□□□□ -0.46
USP54-214ENST00000492357 DNAAF4Q8WXU2 420 aa12.2□□□□□ -0.46
USP54-214ENST00000492357 CRBNQ96SW2 442 aa12.2□□□□□ -0.46
USP54-214ENST00000492357 TAF1LQ8IZX4 1826 aa12.19□□□□□ -0.46
USP54-214ENST00000492357 KCNQ2O43526 872 aa12.19□□□□□ -0.46
USP54-214ENST00000492357 GNAI3P08754 354 aa12.19□□□□□ -0.46
USP54-214ENST00000492357 RLBP1P12271 317 aa12.19□□□□□ -0.46
USP54-214ENST00000492357 ATP6V1AP38606 617 aa12.19□□□□□ -0.46
USP54-214ENST00000492357 NEXNQ0ZGT2 675 aa12.19□□□□□ -0.46
USP54-214ENST00000492357 ANKRD13DQ6ZTN6 518 aa12.19□□□□□ -0.46
USP54-214ENST00000492357 G2E3Q7L622 706 aa12.19□□□□□ -0.46
USP54-214ENST00000492357 NPM2Q86SE8 214 aaKnown RBP12.19□□□□□ -0.46
USP54-214ENST00000492357 ITPRIPQ8IWB1 547 aa12.19□□□□□ -0.46
USP54-214ENST00000492357 DNAJC10Q8IXB1 793 aa12.19□□□□□ -0.46
USP54-214ENST00000492357 LINS1Q8NG48 757 aa12.19□□□□□ -0.46
USP54-214ENST00000492357 PLBD2Q8NHP8 589 aa12.19□□□□□ -0.46
USP54-214ENST00000492357 EXOC6Q8TAG9 804 aa12.19□□□□□ -0.46
USP54-214ENST00000492357 SLC4A9Q96Q91 983 aa12.19□□□□□ -0.46
USP54-214ENST00000492357 SRCIN1Q9C0H9 1055 aa12.19□□□□□ -0.46
USP54-214ENST00000492357 ZBTB40Q9NUA8 1239 aa12.19□□□□□ -0.46
USP54-214ENST00000492357 CCDC87Q9NVE4 849 aa12.19□□□□□ -0.46
USP54-214ENST00000492357 COG6Q9Y2V7 657 aa12.19□□□□□ -0.46
USP54-214ENST00000492357 NUP188Q5SRE5 1749 aa12.19□□□□□ -0.46
USP54-214ENST00000492357 ADCY9O60503 1353 aa12.18□□□□□ -0.46
USP54-214ENST00000492357 ARFGEF2Q9Y6D5 1785 aa12.18□□□□□ -0.46
USP54-214ENST00000492357 A0A087WZG4 1122 aa12.18□□□□□ -0.46
USP54-214ENST00000492357 PRAMEF22A3QJZ6 481 aa12.18□□□□□ -0.46
USP54-214ENST00000492357 NBPF26B4DH59 902 aa12.18□□□□□ -0.46
USP54-214ENST00000492357 ERVV-1B6SEH8 477 aa12.18□□□□□ -0.46
USP54-214ENST00000492357 ZBTB7BO15156 539 aaPredicted RBP12.18□□□□□ -0.46
USP54-214ENST00000492357 HSP90AB3PQ58FF7 597 aa12.18□□□□□ -0.46
USP54-214ENST00000492357 NBPF14Q5TI25 921 aa12.18□□□□□ -0.46
USP54-214ENST00000492357 NBPF10Q6P3W6 841 aaKnown RBP12.18□□□□□ -0.46
USP54-214ENST00000492357 POTEAQ6S8J7 498 aa12.18□□□□□ -0.46
USP54-214ENST00000492357 NBPF15Q8N660 670 aa12.18□□□□□ -0.46
USP54-214ENST00000492357 PHAXQ9H814 394 aaKnown RBP12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms