RNA–Protein interactions for RNA: ENST00000486641.2

CCDC171-208, Transcript of coiled-coil domain containing 171, humanhuman

TSL 1 (best)

Gene CCDC171, Length 2,322 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-208ENST00000486641 TYRO3Q06418 890 aa12.7□□□□□ -0.38
CCDC171-208ENST00000486641 PLCD3Q8N3E9 789 aa12.7□□□□□ -0.38
CCDC171-208ENST00000486641 ZNF397Q8NF99 534 aaPredicted RBP12.7□□□□□ -0.38
CCDC171-208ENST00000486641 LRRCC1Q9C099 1032 aa12.7□□□□□ -0.38
CCDC171-208ENST00000486641 CPSF1Q10570 1443 aaKnown RBP12.69□□□□□ -0.38
CCDC171-208ENST00000486641 NPATQ14207 1427 aa12.69□□□□□ -0.38
CCDC171-208ENST00000486641 ASXL2Q76L83 1435 aa12.69□□□□□ -0.38
CCDC171-208ENST00000486641 CEP135Q66GS9 1140 aa12.69□□□□□ -0.38
CCDC171-208ENST00000486641 CACTINQ8WUQ7 758 aaKnown RBP12.69□□□□□ -0.38
CCDC171-208ENST00000486641 CBX8Q9HC52 389 aa12.69□□□□□ -0.38
CCDC171-208ENST00000486641 LIMCH1Q9UPQ0 1083 aa12.69□□□□□ -0.38
CCDC171-208ENST00000486641 CHMP3Q9Y3E7 222 aa12.69□□□□□ -0.38
CCDC171-208ENST00000486641 SNX14Q9Y5W7 946 aa12.69□□□□□ -0.38
CCDC171-208ENST00000486641 ZNF75DP51815 510 aa12.68□□□□□ -0.38
CCDC171-208ENST00000486641 SLC4A10Q6U841 1118 aa12.68□□□□□ -0.38
CCDC171-208ENST00000486641 PLA2G4DQ86XP0 818 aa12.68□□□□□ -0.38
CCDC171-208ENST00000486641 TRIM5Q9C035 493 aa12.68□□□□□ -0.38
CCDC171-208ENST00000486641 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.68□□□□□ -0.38
CCDC171-208ENST00000486641 MTMR6Q9Y217 621 aa12.68□□□□□ -0.38
CCDC171-208ENST00000486641 V9GYY5 206 aaPredicted RBP12.68□□□□□ -0.38
CCDC171-208ENST00000486641 LARGE1O95461 756 aa12.68□□□□□ -0.38
CCDC171-208ENST00000486641 SLC4A2P04920 1241 aa12.68□□□□□ -0.38
CCDC171-208ENST00000486641 RBM6P78332 1123 aaKnown RBP12.68□□□□□ -0.38
CCDC171-208ENST00000486641 MAPK8IP2Q13387 824 aaPredicted RBP12.68□□□□□ -0.38
CCDC171-208ENST00000486641 MAP3K11Q16584 847 aa12.68□□□□□ -0.38
CCDC171-208ENST00000486641 ST7Q9NRC1 585 aa12.68□□□□□ -0.38
CCDC171-208ENST00000486641 ZNF215Q9UL58 517 aaPredicted RBP12.68□□□□□ -0.38
CCDC171-208ENST00000486641 F6X3S4 739 aa12.67□□□□□ -0.38
CCDC171-208ENST00000486641 CAPN2P17655 700 aa12.67□□□□□ -0.38
CCDC171-208ENST00000486641 LIG1P18858 919 aa12.67□□□□□ -0.38
CCDC171-208ENST00000486641 GJB2P29033 226 aa12.67□□□□□ -0.38
CCDC171-208ENST00000486641 ANO6Q4KMQ2 910 aa12.67□□□□□ -0.38
CCDC171-208ENST00000486641 RASEFQ8IZ41 740 aa12.67□□□□□ -0.38
CCDC171-208ENST00000486641 PRAM1Q96QH2 718 aa12.67□□□□□ -0.38
CCDC171-208ENST00000486641 STAP2Q9UGK3 403 aa12.67□□□□□ -0.38
CCDC171-208ENST00000486641 ARAP3Q8WWN8 1544 aa12.67□□□□□ -0.38
CCDC171-208ENST00000486641 ABCA9Q8IUA7 1624 aa12.67□□□□□ -0.38
CCDC171-208ENST00000486641 TULP2O00295 520 aa12.67□□□□□ -0.38
CCDC171-208ENST00000486641 CCDC144BQ3MJ40 725 aa12.67□□□□□ -0.38
CCDC171-208ENST00000486641 FBXO38Q6PIJ6 1188 aa12.67□□□□□ -0.38
CCDC171-208ENST00000486641 CCDC144CPQ8IYA2 1237 aa12.67□□□□□ -0.38
CCDC171-208ENST00000486641 CKAP2LQ8IYA6 745 aa12.67□□□□□ -0.38
CCDC171-208ENST00000486641 DNAJC2Q99543 621 aaKnown RBP12.67□□□□□ -0.38
CCDC171-208ENST00000486641 CDK19Q9BWU1 502 aa12.67□□□□□ -0.38
CCDC171-208ENST00000486641 NUP62CLQ9H1M0 184 aa12.67□□□□□ -0.38
CCDC171-208ENST00000486641 YTHDC2Q9H6S0 1430 aaKnown RBP12.66□□□□□ -0.38
CCDC171-208ENST00000486641 CPA1P15085 419 aa12.66□□□□□ -0.38
CCDC171-208ENST00000486641 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.66□□□□□ -0.38
CCDC171-208ENST00000486641 CCDC83Q8IWF9 413 aa12.66□□□□□ -0.38
CCDC171-208ENST00000486641 CALCOCO1Q9P1Z2 691 aa12.66□□□□□ -0.38
CCDC171-208ENST00000486641 PNMA6EA0A0J9YXQ4 647 aa12.66□□□□□ -0.38
CCDC171-208ENST00000486641 USP27XA6NNY8 438 aa12.66□□□□□ -0.38
CCDC171-208ENST00000486641 CHL1O00533 1208 aa12.66□□□□□ -0.38
CCDC171-208ENST00000486641 EPB41L2O43491 1005 aaKnown RBP12.66□□□□□ -0.38
CCDC171-208ENST00000486641 GNAI2P04899 355 aa12.66□□□□□ -0.38
CCDC171-208ENST00000486641 HAP1P54257 671 aaPredicted RBP12.66□□□□□ -0.38
CCDC171-208ENST00000486641 SLC20A2Q08357 652 aa12.66□□□□□ -0.38
CCDC171-208ENST00000486641 G2E3Q7L622 706 aa12.66□□□□□ -0.38
CCDC171-208ENST00000486641 TTC6Q86TZ1 520 aa12.66□□□□□ -0.38
CCDC171-208ENST00000486641 CLIP2Q9UDT6 1046 aa12.66□□□□□ -0.38
CCDC171-208ENST00000486641 MAP4K4O95819 1239 aaPredicted RBP12.65□□□□□ -0.38
CCDC171-208ENST00000486641 RTF1Q92541 710 aaKnown RBP12.65□□□□□ -0.38
CCDC171-208ENST00000486641 RAD50Q92878 1312 aa12.65□□□□□ -0.38
CCDC171-208ENST00000486641 VPS37CA5D8V6 355 aaPredicted RBP12.65□□□□□ -0.39
CCDC171-208ENST00000486641 ELF2Q15723 593 aa12.65□□□□□ -0.39
CCDC171-208ENST00000486641 GGT6Q6P531 493 aa12.65□□□□□ -0.39
CCDC171-208ENST00000486641 TNMDQ9H2S6 317 aa12.65□□□□□ -0.39
CCDC171-208ENST00000486641 ZNF446Q9NWS9 450 aa12.65□□□□□ -0.39
CCDC171-208ENST00000486641 PTPRMP28827 1452 aa12.64□□□□□ -0.39
CCDC171-208ENST00000486641 NEXMIFQ5QGS0 1516 aa12.64□□□□□ -0.39
CCDC171-208ENST00000486641 HYPKQ9NX55 129 aa12.64□□□□□ -0.39
CCDC171-208ENST00000486641 PDIA4P13667 645 aaKnown RBP12.63□□□□□ -0.39
CCDC171-208ENST00000486641 CCT4P50991 539 aaKnown RBP12.63□□□□□ -0.39
CCDC171-208ENST00000486641 ARID5BQ14865 1188 aa12.63□□□□□ -0.39
CCDC171-208ENST00000486641 MCM10Q7L590 875 aa12.63□□□□□ -0.39
CCDC171-208ENST00000486641 LRRC8AQ8IWT6 810 aa12.63□□□□□ -0.39
CCDC171-208ENST00000486641 TDRD7Q8NHU6 1098 aaKnown RBP12.63□□□□□ -0.39
CCDC171-208ENST00000486641 KIF1BPQ96EK5 621 aa12.63□□□□□ -0.39
CCDC171-208ENST00000486641 LSG1Q9H089 658 aaKnown RBP12.63□□□□□ -0.39
CCDC171-208ENST00000486641 DACT1Q9NYF0 836 aa12.63□□□□□ -0.39
CCDC171-208ENST00000486641 FRMPD1Q5SYB0 1578 aa12.63□□□□□ -0.39
CCDC171-208ENST00000486641 SGSM2O43147 1006 aa12.63□□□□□ -0.39
CCDC171-208ENST00000486641 ATP8B2P98198 1209 aa12.63□□□□□ -0.39
CCDC171-208ENST00000486641 PTPN14Q15678 1187 aa12.63□□□□□ -0.39
CCDC171-208ENST00000486641 FAM173BQ6P4H8 233 aa12.63□□□□□ -0.39
CCDC171-208ENST00000486641 NYAP1Q6ZVC0 841 aa12.63□□□□□ -0.39
CCDC171-208ENST00000486641 AEBP1Q8IUX7 1158 aa12.63□□□□□ -0.39
CCDC171-208ENST00000486641 ERO1AQ96HE7 468 aa12.63□□□□□ -0.39
CCDC171-208ENST00000486641 TRERF1Q96PN7 1200 aa12.63□□□□□ -0.39
CCDC171-208ENST00000486641 CLTCQ00610 1675 aaKnown RBP12.63□□□□□ -0.39
CCDC171-208ENST00000486641 CASTP20810 708 aaKnown RBP12.62□□□□□ -0.39
CCDC171-208ENST00000486641 FAM193AP78312 1265 aa12.62□□□□□ -0.39
CCDC171-208ENST00000486641 NOL10Q9BSC4 688 aaKnown RBP12.62□□□□□ -0.39
CCDC171-208ENST00000486641 ZRANB1Q9UGI0 708 aa12.62□□□□□ -0.39
CCDC171-208ENST00000486641 NPHP1O15259 732 aa12.62□□□□□ -0.39
CCDC171-208ENST00000486641 CYP2C19P33261 490 aa12.62□□□□□ -0.39
CCDC171-208ENST00000486641 ZNF165P49910 485 aa12.62□□□□□ -0.39
CCDC171-208ENST00000486641 HNRNPH2P55795 449 aaKnown RBP12.62□□□□□ -0.39
CCDC171-208ENST00000486641 KRT85P78386 507 aa12.62□□□□□ -0.39
CCDC171-208ENST00000486641 ST3GAL1Q11201 340 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms