RNA–Protein interactions for RNA: ENST00000486530.1

HPS3-206, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

TSL 5

Gene HPS3, Length 1,894 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-206ENST00000486530 CERKQ8TCT0 537 aa25.23■■□□□ 1.63
HPS3-206ENST00000486530 STRN4Q9NRL3 753 aa25.23■■□□□ 1.63
HPS3-206ENST00000486530 COL22A1Q8NFW1 1626 aaPredicted RBP25.23■■□□□ 1.63
HPS3-206ENST00000486530 TBC1D9Q6ZT07 1266 aa25.23■■□□□ 1.63
HPS3-206ENST00000486530 C16orf71Q8IYS4 520 aaPredicted RBP25.23■■□□□ 1.63
HPS3-206ENST00000486530 HYPKQ9NX55 129 aa25.23■■□□□ 1.63
HPS3-206ENST00000486530 APBB1O00213 710 aa25.22■■□□□ 1.63
HPS3-206ENST00000486530 SMARCA5O60264 1052 aaPredicted RBP25.22■■□□□ 1.63
HPS3-206ENST00000486530 PNMA6EA0A0J9YXQ4 647 aa25.21■■□□□ 1.63
HPS3-206ENST00000486530 ANXA1P04083 346 aa25.21■■□□□ 1.63
HPS3-206ENST00000486530 RBM25P49756 843 aaKnown RBP25.21■■□□□ 1.63
HPS3-206ENST00000486530 IBTKQ9P2D0 1353 aaPredicted RBP25.2■■□□□ 1.63
HPS3-206ENST00000486530 NFATC2IPQ8NCF5 419 aa25.2■■□□□ 1.62
HPS3-206ENST00000486530 BTG4Q9NY30 223 aa25.2■■□□□ 1.62
HPS3-206ENST00000486530 ZCRB1Q8TBF4 217 aaKnown RBP25.19■■□□□ 1.62
HPS3-206ENST00000486530 OTUD7AQ8TE49 926 aaPredicted RBP25.19■■□□□ 1.62
HPS3-206ENST00000486530 DDX21Q9NR30 783 aaKnown RBP eCLIP25.19■■□□□ 1.62
HPS3-206ENST00000486530 EXOC6BQ9Y2D4 811 aa25.19■■□□□ 1.62
HPS3-206ENST00000486530 PRAMEF22A3QJZ6 481 aa25.19■■□□□ 1.62
HPS3-206ENST00000486530 IL2RBP14784 551 aa25.19■■□□□ 1.62
HPS3-206ENST00000486530 RTL5Q5HYW3 569 aaPredicted RBP25.19■■□□□ 1.62
HPS3-206ENST00000486530 KSR2Q6VAB6 950 aa25.19■■□□□ 1.62
HPS3-206ENST00000486530 LRRCC1Q9C099 1032 aa25.19■■□□□ 1.62
HPS3-206ENST00000486530 SLC39A6Q13433 755 aa25.18■■□□□ 1.62
HPS3-206ENST00000486530 PROSER3Q2NL68 480 aa25.18■■□□□ 1.62
HPS3-206ENST00000486530 SSH3Q8TE77 659 aa25.18■■□□□ 1.62
HPS3-206ENST00000486530 OSBPL3Q9H4L5 887 aa25.18■■□□□ 1.62
HPS3-206ENST00000486530 LAMB4A4D0S4 1761 aa25.18■■□□□ 1.62
HPS3-206ENST00000486530 TUBGCP6Q96RT7 1819 aa25.18■■□□□ 1.62
HPS3-206ENST00000486530 ALDH1L1O75891 902 aa25.17■■□□□ 1.62
HPS3-206ENST00000486530 COL16A1Q07092 1604 aaPredicted RBP25.17■■□□□ 1.62
HPS3-206ENST00000486530 USP35Q9P2H5 1018 aa25.17■■□□□ 1.62
HPS3-206ENST00000486530 DDX58O95786 925 aaKnown RBP25.16■■□□□ 1.62
HPS3-206ENST00000486530 TBC1D2Q9BYX2 928 aa25.16■■□□□ 1.62
HPS3-206ENST00000486530 MAP3K2Q9Y2U5 619 aa25.16■■□□□ 1.62
HPS3-206ENST00000486530 PCDH11XQ9BZA7 1347 aa25.16■■□□□ 1.62
HPS3-206ENST00000486530 PCDH11YQ9BZA8 1340 aa25.16■■□□□ 1.62
HPS3-206ENST00000486530 PHLPP1O60346 1717 aa25.16■■□□□ 1.62
HPS3-206ENST00000486530 TTC5Q8N0Z6 440 aa25.15■■□□□ 1.62
HPS3-206ENST00000486530 BCL11AQ9H165 835 aa25.15■■□□□ 1.62
HPS3-206ENST00000486530 COL14A1Q05707 1796 aaKnown RBP25.15■■□□□ 1.62
HPS3-206ENST00000486530 POLA2Q14181 598 aa25.15■■□□□ 1.62
HPS3-206ENST00000486530 SHANK3Q9BYB0 1731 aa25.15■■□□□ 1.62
HPS3-206ENST00000486530 NBPF7P0C2Y1 421 aaPredicted RBP25.14■■□□□ 1.61
HPS3-206ENST00000486530 PDE1AP54750 535 aa25.13■■□□□ 1.61
HPS3-206ENST00000486530 PDIA6Q15084 440 aa25.13■■□□□ 1.61
HPS3-206ENST00000486530 HDAC5Q9UQL6 1122 aa25.13■■□□□ 1.61
HPS3-206ENST00000486530 GLI3P10071 1580 aa25.13■■□□□ 1.61
HPS3-206ENST00000486530 SALL3Q9BXA9 1300 aa25.13■■□□□ 1.61
HPS3-206ENST00000486530 CABP4P57796 275 aa25.13■■□□□ 1.61
HPS3-206ENST00000486530 NKX1-1Q15270 411 aaPredicted RBP25.13■■□□□ 1.61
HPS3-206ENST00000486530 PPP1R42Q7Z4L9 355 aa25.13■■□□□ 1.61
HPS3-206ENST00000486530 ZNF496Q96IT1 587 aaPredicted RBP25.13■■□□□ 1.61
HPS3-206ENST00000486530 SDSP20132 328 aa25.12■■□□□ 1.61
HPS3-206ENST00000486530 FMNL2Q96PY5 1086 aa25.12■■□□□ 1.61
HPS3-206ENST00000486530 RAB11FIP3O75154 756 aa25.11■■□□□ 1.61
HPS3-206ENST00000486530 SNRPA1P09661 255 aaKnown RBP25.11■■□□□ 1.61
HPS3-206ENST00000486530 CASC1Q6TDU7 716 aa25.11■■□□□ 1.61
HPS3-206ENST00000486530 UBR2Q8IWV8 1755 aa25.11■■□□□ 1.61
HPS3-206ENST00000486530 LINS1Q8NG48 757 aa25.1■■□□□ 1.61
HPS3-206ENST00000486530 PAPPAQ13219 1627 aa25.1■■□□□ 1.61
HPS3-206ENST00000486530 SRGAP3O43295 1099 aa25.09■■□□□ 1.61
HPS3-206ENST00000486530 MX1P20591 662 aa25.09■■□□□ 1.61
HPS3-206ENST00000486530 MTX1Q13505 466 aa25.09■■□□□ 1.61
HPS3-206ENST00000486530 C9orf78Q9NZ63 289 aaPredicted RBP25.09■■□□□ 1.61
HPS3-206ENST00000486530 DDX54Q8TDD1 881 aaKnown RBP25.07■■□□□ 1.6
HPS3-206ENST00000486530 AOX1Q06278 1338 aa25.07■■□□□ 1.6
HPS3-206ENST00000486530 ERVV-2B6SEH9 535 aa25.06■■□□□ 1.6
HPS3-206ENST00000486530 HSP90AB4PQ58FF6 505 aa25.06■■□□□ 1.6
HPS3-206ENST00000486530 HSCBQ8IWL3 235 aa25.06■■□□□ 1.6
HPS3-206ENST00000486530 STAP2Q9UGK3 403 aa25.06■■□□□ 1.6
HPS3-206ENST00000486530 SURF6O75683 361 aaKnown RBP25.06■■□□□ 1.6
HPS3-206ENST00000486530 ADAMTS2O95450 1211 aa25.06■■□□□ 1.6
HPS3-206ENST00000486530 AIMP1Q12904 312 aaKnown RBP25.06■■□□□ 1.6
HPS3-206ENST00000486530 SNX21Q969T3 373 aa25.06■■□□□ 1.6
HPS3-206ENST00000486530 UTYO14607 1347 aa25.05■■□□□ 1.6
HPS3-206ENST00000486530 CWF19L2Q2TBE0 894 aaKnown RBP25.05■■□□□ 1.6
HPS3-206ENST00000486530 NFKBIBQ15653 356 aa25.04■■□□□ 1.6
HPS3-206ENST00000486530 RIC3Q7Z5B4 369 aa25.04■■□□□ 1.6
HPS3-206ENST00000486530 ARFGEF2Q9Y6D5 1785 aa25.04■■□□□ 1.6
HPS3-206ENST00000486530 DISP2A7MBM2 1401 aa25.04■■□□□ 1.6
HPS3-206ENST00000486530 MYL6BP14649 208 aa25.04■■□□□ 1.6
HPS3-206ENST00000486530 KIF1BPQ96EK5 621 aa25.04■■□□□ 1.6
HPS3-206ENST00000486530 AFDNP55196 1824 aaKnown RBP25.03■■□□□ 1.6
HPS3-206ENST00000486530 GRM8O00222 908 aa25.03■■□□□ 1.6
HPS3-206ENST00000486530 NEXNQ0ZGT2 675 aa25.03■■□□□ 1.6
HPS3-206ENST00000486530 XAGE3Q8WTP9 111 aa25.03■■□□□ 1.6
HPS3-206ENST00000486530 KIF2CQ99661 725 aa25.03■■□□□ 1.6
HPS3-206ENST00000486530 USP16Q9Y5T5 823 aa25.03■■□□□ 1.6
HPS3-206ENST00000486530 LRP10Q7Z4F1 713 aa25.02■■□□□ 1.6
HPS3-206ENST00000486530 RHPN1Q8TCX5 695 aa25.02■■□□□ 1.6
HPS3-206ENST00000486530 ANTXR1Q9H6X2 564 aa25.02■■□□□ 1.6
HPS3-206ENST00000486530 SLKQ9H2G2 1235 aaPredicted RBP25.02■■□□□ 1.6
HPS3-206ENST00000486530 ERBB4Q15303 1308 aa25.02■■□□□ 1.6
HPS3-206ENST00000486530 AK9Q5TCS8 1911 aa25.01■■□□□ 1.59
HPS3-206ENST00000486530 NUTM2BA6NNL0 878 aaPredicted RBP25.01■■□□□ 1.59
HPS3-206ENST00000486530 NUTM2EB1AL46 878 aaPredicted RBP25.01■■□□□ 1.59
HPS3-206ENST00000486530 COPS6Q7L5N1 327 aa25.01■■□□□ 1.59
HPS3-206ENST00000486530 NUTM2AQ8IVF1 878 aaPredicted RBP25.01■■□□□ 1.59
HPS3-206ENST00000486530 TOGARAM1Q9Y4F4 1720 aa25.01■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms