RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 FSTL1Q12841 308 aa17.67■□□□□ 0.42
HDAC6-227ENST00000485102 KDM2BQ8NHM5 1336 aa17.67■□□□□ 0.42
HDAC6-227ENST00000485102 SLC39A6Q13433 755 aa17.66■□□□□ 0.42
HDAC6-227ENST00000485102 NFIXQ14938 502 aa17.66■□□□□ 0.42
HDAC6-227ENST00000485102 MTHFSDQ2M296 383 aaKnown RBP17.66■□□□□ 0.42
HDAC6-227ENST00000485102 NRXN2Q9P2S2 1712 aa17.66■□□□□ 0.42
HDAC6-227ENST00000485102 KCPQ6ZWJ8 1503 aa17.66■□□□□ 0.42
HDAC6-227ENST00000485102 DIAPH1O60610 1272 aaKnown RBP17.65■□□□□ 0.42
HDAC6-227ENST00000485102 BCL2L12Q9HB09 334 aa17.65■□□□□ 0.42
HDAC6-227ENST00000485102 RNF181Q9P0P0 153 aa17.65■□□□□ 0.42
HDAC6-227ENST00000485102 KIF7Q2M1P5 1343 aa17.65■□□□□ 0.42
HDAC6-227ENST00000485102 VIRMAQ69YN4 1812 aaKnown RBP17.65■□□□□ 0.42
HDAC6-227ENST00000485102 COL15A1P39059 1388 aa17.65■□□□□ 0.42
HDAC6-227ENST00000485102 AFDNP55196 1824 aaKnown RBP17.64■□□□□ 0.41
HDAC6-227ENST00000485102 HMOX1P09601 288 aa17.64■□□□□ 0.41
HDAC6-227ENST00000485102 ZBTB1Q9Y2K1 713 aa17.64■□□□□ 0.41
HDAC6-227ENST00000485102 C16orf71Q8IYS4 520 aaPredicted RBP17.63■□□□□ 0.41
HDAC6-227ENST00000485102 NPC1L1Q9UHC9 1359 aa17.63■□□□□ 0.41
HDAC6-227ENST00000485102 UBR2Q8IWV8 1755 aa17.62■□□□□ 0.41
HDAC6-227ENST00000485102 STARD3NLO95772 234 aa17.62■□□□□ 0.41
HDAC6-227ENST00000485102 SERPINB2P05120 415 aa17.62■□□□□ 0.41
HDAC6-227ENST00000485102 EIF5P55010 431 aaKnown RBP17.62■□□□□ 0.41
HDAC6-227ENST00000485102 TTLL6Q8N841 843 aa17.61■□□□□ 0.41
HDAC6-227ENST00000485102 CCER1Q8TC90 406 aaPredicted RBP17.61■□□□□ 0.41
HDAC6-227ENST00000485102 TEX13AQ9BXU3 409 aaPredicted RBP17.61■□□□□ 0.41
HDAC6-227ENST00000485102 PDZRN3Q9UPQ7 1066 aa17.61■□□□□ 0.41
HDAC6-227ENST00000485102 A0A087WZG4 1122 aa17.6■□□□□ 0.41
HDAC6-227ENST00000485102 LMNB1P20700 586 aa17.6■□□□□ 0.41
HDAC6-227ENST00000485102 JMYQ8N9B5 988 aa17.6■□□□□ 0.41
HDAC6-227ENST00000485102 RRAGCQ9HB90 399 aa17.6■□□□□ 0.41
HDAC6-227ENST00000485102 WDR90Q96KV7 1748 aa17.6■□□□□ 0.41
HDAC6-227ENST00000485102 DLEC1Q9Y238 1755 aa17.6■□□□□ 0.41
HDAC6-227ENST00000485102 TNRC6CQ9HCJ0 1690 aaKnown RBP17.59■□□□□ 0.41
HDAC6-227ENST00000485102 KLRG1Q96E93 195 aa17.59■□□□□ 0.41
HDAC6-227ENST00000485102 GLTPD2A6NH11 291 aa17.58■□□□□ 0.4
HDAC6-227ENST00000485102 H0YIN7 160 aa17.58■□□□□ 0.4
HDAC6-227ENST00000485102 ZNF790Q6PG37 636 aa17.58■□□□□ 0.4
HDAC6-227ENST00000485102 TTC5Q8N0Z6 440 aa17.58■□□□□ 0.4
HDAC6-227ENST00000485102 IL17REQ8NFR9 667 aa17.58■□□□□ 0.4
HDAC6-227ENST00000485102 GAS2L2Q8NHY3 880 aa17.58■□□□□ 0.4
HDAC6-227ENST00000485102 GNAT3A8MTJ3 354 aa17.57■□□□□ 0.4
HDAC6-227ENST00000485102 CANXP27824 592 aaKnown RBP17.57■□□□□ 0.4
HDAC6-227ENST00000485102 SMC1BQ8NDV3 1235 aa17.57■□□□□ 0.4
HDAC6-227ENST00000485102 ZNF496Q96IT1 587 aaPredicted RBP17.57■□□□□ 0.4
HDAC6-227ENST00000485102 COL3A1P02461 1466 aaPredicted RBP17.56■□□□□ 0.4
HDAC6-227ENST00000485102 HEG1Q9ULI3 1381 aa17.56■□□□□ 0.4
HDAC6-227ENST00000485102 VEGFAP15692 232 aaPredicted RBP17.56■□□□□ 0.4
HDAC6-227ENST00000485102 IL6STP40189 918 aaPredicted RBP17.56■□□□□ 0.4
HDAC6-227ENST00000485102 PRELPP51888 382 aa17.56■□□□□ 0.4
HDAC6-227ENST00000485102 TEFQ10587 303 aa17.56■□□□□ 0.4
HDAC6-227ENST00000485102 CC2D1BQ5T0F9 858 aaKnown RBP17.56■□□□□ 0.4
HDAC6-227ENST00000485102 C2CD5Q86YS7 1000 aa17.56■□□□□ 0.4
HDAC6-227ENST00000485102 BRIP1Q9BX63 1249 aa17.56■□□□□ 0.4
HDAC6-227ENST00000485102 RASSF7Q02833 373 aa17.55■□□□□ 0.4
HDAC6-227ENST00000485102 CEMIPQ8WUJ3 1361 aa17.54■□□□□ 0.4
HDAC6-227ENST00000485102 NFKBIEO00221 500 aa17.54■□□□□ 0.4
HDAC6-227ENST00000485102 PCNTO95613 3336 aa17.54■□□□□ 0.4
HDAC6-227ENST00000485102 CARMIL3Q8ND23 1372 aa17.53■□□□□ 0.4
HDAC6-227ENST00000485102 SIPA1L3O60292 1781 aaPredicted RBP17.53■□□□□ 0.4
HDAC6-227ENST00000485102 CCDC88AQ3V6T2 1871 aa17.53■□□□□ 0.4
HDAC6-227ENST00000485102 PDE6BP35913 854 aa17.53■□□□□ 0.4
HDAC6-227ENST00000485102 TBC1D9BQ66K14 1250 aa17.53■□□□□ 0.4
HDAC6-227ENST00000485102 FMNL2Q96PY5 1086 aa17.52■□□□□ 0.4
HDAC6-227ENST00000485102 U2SURPO15042 1029 aaKnown RBP17.51■□□□□ 0.39
HDAC6-227ENST00000485102 HTRA3P83110 453 aa17.51■□□□□ 0.39
HDAC6-227ENST00000485102 PRR5LQ6MZQ0 368 aa17.51■□□□□ 0.39
HDAC6-227ENST00000485102 BICDL1Q6ZP65 573 aa17.51■□□□□ 0.39
HDAC6-227ENST00000485102 ANKRD31Q8N7Z5 1873 aa17.51■□□□□ 0.39
HDAC6-227ENST00000485102 LTBP3Q9NS15 1303 aa17.5■□□□□ 0.39
HDAC6-227ENST00000485102 DPY19L2Q6NUT2 758 aa17.5■□□□□ 0.39
HDAC6-227ENST00000485102 TBC1D2BQ9UPU7 963 aa17.5■□□□□ 0.39
HDAC6-227ENST00000485102 DICER1Q9UPY3 1922 aaKnown RBP17.5■□□□□ 0.39
HDAC6-227ENST00000485102 FER1L6Q2WGJ9 1857 aa17.5■□□□□ 0.39
HDAC6-227ENST00000485102 SCN7AQ01118 1682 aa17.49■□□□□ 0.39
HDAC6-227ENST00000485102 POTECB2RU33 542 aa17.49■□□□□ 0.39
HDAC6-227ENST00000485102 CAMTA2O94983 1202 aa17.49■□□□□ 0.39
HDAC6-227ENST00000485102 A1BGP04217 495 aa17.49■□□□□ 0.39
HDAC6-227ENST00000485102 SETDB2Q96T68 719 aa17.49■□□□□ 0.39
HDAC6-227ENST00000485102 RGL2O15211 777 aa17.48■□□□□ 0.39
HDAC6-227ENST00000485102 CLEC4GQ6UXB4 293 aa17.48■□□□□ 0.39
HDAC6-227ENST00000485102 NPM2Q86SE8 214 aaKnown RBP17.48■□□□□ 0.39
HDAC6-227ENST00000485102 CNKSR1Q969H4 720 aa17.48■□□□□ 0.39
HDAC6-227ENST00000485102 ZNF622Q969S3 477 aaKnown RBP eCLIP17.48■□□□□ 0.393e-6■□□□□ 9.3
HDAC6-227ENST00000485102 PHACTR3Q96KR7 559 aa17.48■□□□□ 0.39
HDAC6-227ENST00000485102 BTBD11A6QL63 1104 aa17.47■□□□□ 0.39
HDAC6-227ENST00000485102 STYK1Q6J9G0 422 aa17.47■□□□□ 0.39
HDAC6-227ENST00000485102 RSPH6AQ9H0K4 717 aa17.47■□□□□ 0.39
HDAC6-227ENST00000485102 TIAM2Q8IVF5 1701 aa17.47■□□□□ 0.39
HDAC6-227ENST00000485102 C21orf2O43822 256 aa17.46■□□□□ 0.39
HDAC6-227ENST00000485102 SRGNP10124 158 aa17.46■□□□□ 0.39
HDAC6-227ENST00000485102 ERFEQ4G0M1 354 aa17.46■□□□□ 0.39
HDAC6-227ENST00000485102 SOGA3Q5TF21 947 aa17.46■□□□□ 0.39
HDAC6-227ENST00000485102 CNBD1Q8NA66 436 aa17.46■□□□□ 0.39
HDAC6-227ENST00000485102 KCNQ3O43525 872 aa17.45■□□□□ 0.38
HDAC6-227ENST00000485102 PRKAR2BP31323 418 aa17.45■□□□□ 0.38
HDAC6-227ENST00000485102 DZIP3Q86Y13 1208 aaKnown RBP17.45■□□□□ 0.38
HDAC6-227ENST00000485102 MASTLQ96GX5 879 aa17.45■□□□□ 0.38
HDAC6-227ENST00000485102 CFAP53Q96M91 514 aa17.45■□□□□ 0.38
HDAC6-227ENST00000485102 USP16Q9Y5T5 823 aa17.45■□□□□ 0.38
HDAC6-227ENST00000485102 COL11A2P13942 1736 aaPredicted RBP17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms