RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 DDX21Q9NR30 783 aaKnown RBP eCLIP10.57□□□□□ -0.72
SYNE1-225ENST00000481502 HYPKQ9NX55 129 aa10.57□□□□□ -0.72
SYNE1-225ENST00000481502 PDE3AQ14432 1141 aa10.56□□□□□ -0.72
SYNE1-225ENST00000481502 SSH1Q8WYL5 1049 aa10.56□□□□□ -0.72
SYNE1-225ENST00000481502 ELL2O00472 640 aaPredicted RBP10.55□□□□□ -0.72
SYNE1-225ENST00000481502 PTCD1O75127 700 aaKnown RBP10.55□□□□□ -0.72
SYNE1-225ENST00000481502 SLC4A2P04920 1241 aa10.55□□□□□ -0.72
SYNE1-225ENST00000481502 ATP6V1AP38606 617 aa10.55□□□□□ -0.72
SYNE1-225ENST00000481502 AAMPQ13685 434 aa10.55□□□□□ -0.72
SYNE1-225ENST00000481502 MRPL50Q8N5N7 158 aaKnown RBP10.55□□□□□ -0.72
SYNE1-225ENST00000481502 RBM42Q9BTD8 480 aaKnown RBP10.55□□□□□ -0.72
SYNE1-225ENST00000481502 SMC4Q9NTJ3 1288 aa10.55□□□□□ -0.72
SYNE1-225ENST00000481502 USP16Q9Y5T5 823 aa10.55□□□□□ -0.72
SYNE1-225ENST00000481502 IBTKQ9P2D0 1353 aaPredicted RBP10.54□□□□□ -0.72
SYNE1-225ENST00000481502 TRIM37O94972 964 aa10.54□□□□□ -0.72
SYNE1-225ENST00000481502 CYP19A1P11511 503 aaPredicted RBP10.54□□□□□ -0.72
SYNE1-225ENST00000481502 IL6STP40189 918 aaPredicted RBP10.54□□□□□ -0.72
SYNE1-225ENST00000481502 KRT24Q2M2I5 525 aa10.54□□□□□ -0.72
SYNE1-225ENST00000481502 ERICH6BQ5W0A0 696 aa10.54□□□□□ -0.72
SYNE1-225ENST00000481502 ZKSCAN2Q63HK3 967 aa10.54□□□□□ -0.72
SYNE1-225ENST00000481502 API5Q9BZZ5 524 aaKnown RBP10.54□□□□□ -0.72
SYNE1-225ENST00000481502 CHMP4BQ9H444 224 aaKnown RBP10.54□□□□□ -0.72
SYNE1-225ENST00000481502 CNTNAP4Q9C0A0 1308 aa10.54□□□□□ -0.72
SYNE1-225ENST00000481502 RGPD3A6NKT7 1758 aaPredicted RBP10.53□□□□□ -0.72
SYNE1-225ENST00000481502 RGPD4Q7Z3J3 1758 aa10.53□□□□□ -0.72
SYNE1-225ENST00000481502 DDX58O95786 925 aaKnown RBP10.53□□□□□ -0.72
SYNE1-225ENST00000481502 EIF2S2P20042 333 aaKnown RBP10.53□□□□□ -0.72
SYNE1-225ENST00000481502 SF3B2Q13435 895 aaKnown RBP10.53□□□□□ -0.72
SYNE1-225ENST00000481502 PDIA6Q15084 440 aa10.53□□□□□ -0.72
SYNE1-225ENST00000481502 FAM182BQ5T319 152 aa10.53□□□□□ -0.72
SYNE1-225ENST00000481502 SLC4A9Q96Q91 983 aa10.53□□□□□ -0.72
SYNE1-225ENST00000481502 BTAF1O14981 1849 aa10.53□□□□□ -0.72
SYNE1-225ENST00000481502 A0A087WZG4 1122 aa10.52□□□□□ -0.73
SYNE1-225ENST00000481502 BCAR3O75815 825 aa10.52□□□□□ -0.73
SYNE1-225ENST00000481502 APBA3O96018 575 aa10.52□□□□□ -0.73
SYNE1-225ENST00000481502 RRP1P56182 461 aaKnown RBP10.52□□□□□ -0.73
SYNE1-225ENST00000481502 ATF7IPQ6VMQ6 1270 aa10.52□□□□□ -0.73
SYNE1-225ENST00000481502 DNAJC10Q8IXB1 793 aa10.52□□□□□ -0.73
SYNE1-225ENST00000481502 CCNL1Q9UK58 526 aaPredicted RBP10.52□□□□□ -0.73
SYNE1-225ENST00000481502 SUPT16HQ9Y5B9 1047 aaKnown RBP10.52□□□□□ -0.73
SYNE1-225ENST00000481502 LY75O60449 1722 aa10.52□□□□□ -0.73
SYNE1-225ENST00000481502 LAMB4A4D0S4 1761 aa10.52□□□□□ -0.73
SYNE1-225ENST00000481502 BAG6P46379 1132 aa10.51□□□□□ -0.73
SYNE1-225ENST00000481502 FLIIQ13045 1269 aa10.51□□□□□ -0.73
SYNE1-225ENST00000481502 LRP10Q7Z4F1 713 aa10.51□□□□□ -0.73
SYNE1-225ENST00000481502 NPM2Q86SE8 214 aaKnown RBP10.51□□□□□ -0.73
SYNE1-225ENST00000481502 CCDC87Q9NVE4 849 aa10.51□□□□□ -0.73
SYNE1-225ENST00000481502 CHPF2Q9P2E5 772 aa10.51□□□□□ -0.73
SYNE1-225ENST00000481502 C5P01031 1676 aa10.5□□□□□ -0.73
SYNE1-225ENST00000481502 ERVV-1B6SEH8 477 aa10.5□□□□□ -0.73
SYNE1-225ENST00000481502 EIF5P55010 431 aaKnown RBP10.5□□□□□ -0.73
SYNE1-225ENST00000481502 TXNRD1Q16881 649 aa10.5□□□□□ -0.73
SYNE1-225ENST00000481502 PTF1AQ7RTS3 328 aa10.5□□□□□ -0.73
SYNE1-225ENST00000481502 DZIP1LQ8IYY4 767 aaKnown RBP10.5□□□□□ -0.73
SYNE1-225ENST00000481502 FLAD1Q8NFF5 587 aa10.5□□□□□ -0.73
SYNE1-225ENST00000481502 NOB1Q9ULX3 412 aaKnown RBP10.5□□□□□ -0.73
SYNE1-225ENST00000481502 PRAMEF22A3QJZ6 481 aa10.49□□□□□ -0.73
SYNE1-225ENST00000481502 NBPF26B4DH59 902 aa10.49□□□□□ -0.73
SYNE1-225ENST00000481502 RPS6KA4O75676 772 aa10.49□□□□□ -0.73
SYNE1-225ENST00000481502 CANXP27824 592 aaKnown RBP10.49□□□□□ -0.73
SYNE1-225ENST00000481502 CRKLP46109 303 aaKnown RBP10.49□□□□□ -0.73
SYNE1-225ENST00000481502 ITPK1Q13572 414 aa10.49□□□□□ -0.73
SYNE1-225ENST00000481502 NBPF14Q5TI25 921 aa10.49□□□□□ -0.73
SYNE1-225ENST00000481502 NBPF10Q6P3W6 841 aaKnown RBP10.49□□□□□ -0.73
SYNE1-225ENST00000481502 INTS5Q6P9B9 1019 aaKnown RBP10.49□□□□□ -0.73
SYNE1-225ENST00000481502 CLEC4GQ6UXB4 293 aa10.49□□□□□ -0.73
SYNE1-225ENST00000481502 KSR2Q6VAB6 950 aa10.49□□□□□ -0.73
SYNE1-225ENST00000481502 ANKRD13DQ6ZTN6 518 aa10.49□□□□□ -0.73
SYNE1-225ENST00000481502 NBPF15Q8N660 670 aa10.49□□□□□ -0.73
SYNE1-225ENST00000481502 PLBD2Q8NHP8 589 aa10.49□□□□□ -0.73
SYNE1-225ENST00000481502 CAMKK2Q96RR4 588 aa10.49□□□□□ -0.73
SYNE1-225ENST00000481502 HDAC5Q9UQL6 1122 aa10.49□□□□□ -0.73
SYNE1-225ENST00000481502 A1BGP04217 495 aa10.48□□□□□ -0.73
SYNE1-225ENST00000481502 NEFLP07196 543 aa10.48□□□□□ -0.73
SYNE1-225ENST00000481502 TRIM27P14373 513 aa10.48□□□□□ -0.73
SYNE1-225ENST00000481502 CCT4P50991 539 aaKnown RBP10.48□□□□□ -0.73
SYNE1-225ENST00000481502 TRIM28Q13263 835 aaKnown RBP10.48□□□□□ -0.73
SYNE1-225ENST00000481502 FKBP5Q13451 457 aaPredicted RBP10.48□□□□□ -0.73
SYNE1-225ENST00000481502 HSP90AB3PQ58FF7 597 aa10.48□□□□□ -0.73
SYNE1-225ENST00000481502 INTS3Q68E01 1043 aaKnown RBP10.48□□□□□ -0.73
SYNE1-225ENST00000481502 ABCC4O15439 1325 aa10.48□□□□□ -0.73
SYNE1-225ENST00000481502 PXDNLA1KZ92 1463 aa10.48□□□□□ -0.73
SYNE1-225ENST00000481502 RREB1Q92766 1687 aa10.47□□□□□ -0.73
SYNE1-225ENST00000481502 TJP1Q07157 1748 aa10.47□□□□□ -0.73
SYNE1-225ENST00000481502 SSFA2P28290 1259 aa10.47□□□□□ -0.73
SYNE1-225ENST00000481502 COPS6Q7L5N1 327 aa10.47□□□□□ -0.73
SYNE1-225ENST00000481502 FTSJ3Q8IY81 847 aaKnown RBP10.47□□□□□ -0.73
SYNE1-225ENST00000481502 PROM2Q8N271 834 aa10.47□□□□□ -0.73
SYNE1-225ENST00000481502 DNAAF4Q8WXU2 420 aa10.47□□□□□ -0.73
SYNE1-225ENST00000481502 FRAT1Q92837 279 aaPredicted RBP10.47□□□□□ -0.73
SYNE1-225ENST00000481502 BCL2L13Q9BXK5 485 aa10.47□□□□□ -0.73
SYNE1-225ENST00000481502 PHAXQ9H814 394 aaKnown RBP10.47□□□□□ -0.73
SYNE1-225ENST00000481502 DDX19BQ9UMR2 479 aa10.47□□□□□ -0.73
SYNE1-225ENST00000481502 RTCBQ9Y3I0 505 aaKnown RBP10.47□□□□□ -0.73
SYNE1-225ENST00000481502 ATP10DQ9P241 1426 aa10.47□□□□□ -0.73
SYNE1-225ENST00000481502 ALDH1L1O75891 902 aa10.46□□□□□ -0.73
SYNE1-225ENST00000481502 NEXNQ0ZGT2 675 aa10.46□□□□□ -0.73
SYNE1-225ENST00000481502 KIF6Q6ZMV9 814 aa10.46□□□□□ -0.73
SYNE1-225ENST00000481502 LINC00116Q8NCU8 138 aa10.46□□□□□ -0.73
SYNE1-225ENST00000481502 XAGE3Q8WTP9 111 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms