RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 METP08581 1390 aa17.4■□□□□ 0.38
HDAC6-220ENST00000477528 KIF24Q5T7B8 1368 aa17.4■□□□□ 0.38
HDAC6-220ENST00000477528 ADGRB3O60242 1522 aa17.4■□□□□ 0.38
HDAC6-220ENST00000477528 KIAA0232Q92628 1395 aa17.4■□□□□ 0.38
HDAC6-220ENST00000477528 ABCA6Q8N139 1617 aa17.4■□□□□ 0.38
HDAC6-220ENST00000477528 LMTK2Q8IWU2 1503 aa17.4■□□□□ 0.38
HDAC6-220ENST00000477528 TPM3P06753 285 aa17.4■□□□□ 0.38
HDAC6-220ENST00000477528 ANAPC15P60006 121 aa17.4■□□□□ 0.38
HDAC6-220ENST00000477528 SAFBQ15424 915 aaKnown RBP eCLIP17.4■□□□□ 0.38
HDAC6-220ENST00000477528 ZNF396Q96N95 335 aaPredicted RBP17.4■□□□□ 0.38
HDAC6-220ENST00000477528 ABCC4O15439 1325 aa17.4■□□□□ 0.38
HDAC6-220ENST00000477528 ARHGEF10O15013 1369 aa17.39■□□□□ 0.37
HDAC6-220ENST00000477528 G2E3Q7L622 706 aa17.39■□□□□ 0.37
HDAC6-220ENST00000477528 CCDC83Q8IWF9 413 aa17.39■□□□□ 0.37
HDAC6-220ENST00000477528 ESPNB1AK53 854 aa17.38■□□□□ 0.37
HDAC6-220ENST00000477528 KSR2Q6VAB6 950 aa17.38■□□□□ 0.37
HDAC6-220ENST00000477528 HOOK1Q9UJC3 728 aaKnown RBP17.38■□□□□ 0.37
HDAC6-220ENST00000477528 CCDC192P0DO97 292 aa17.38■□□□□ 0.37
HDAC6-220ENST00000477528 SETBP1Q9Y6X0 1596 aa17.38■□□□□ 0.37
HDAC6-220ENST00000477528 FKBP4Q02790 459 aaKnown RBP eCLIP17.38■□□□□ 0.37
HDAC6-220ENST00000477528 KLHL40Q2TBA0 621 aa17.38■□□□□ 0.37
HDAC6-220ENST00000477528 SDF4Q9BRK5 362 aa17.38■□□□□ 0.37
HDAC6-220ENST00000477528 CTNNA3Q9UI47 895 aa17.38■□□□□ 0.37
HDAC6-220ENST00000477528 PTCD1O75127 700 aaKnown RBP17.37■□□□□ 0.37
HDAC6-220ENST00000477528 ARID3AQ99856 593 aa17.37■□□□□ 0.37
HDAC6-220ENST00000477528 A0A087WZG4 1122 aa17.37■□□□□ 0.37
HDAC6-220ENST00000477528 SYCE3A1L190 88 aa17.37■□□□□ 0.37
HDAC6-220ENST00000477528 KINO60870 393 aaKnown RBP17.37■□□□□ 0.37
HDAC6-220ENST00000477528 LTKP29376 864 aa17.37■□□□□ 0.37
HDAC6-220ENST00000477528 ZSCAN25Q6NSZ9 544 aa17.37■□□□□ 0.37
HDAC6-220ENST00000477528 SNRPA1P09661 255 aaKnown RBP17.37■□□□□ 0.37
HDAC6-220ENST00000477528 LRRC59Q96AG4 307 aaKnown RBP17.37■□□□□ 0.37
HDAC6-220ENST00000477528 TMX3Q96JJ7 454 aa17.37■□□□□ 0.37
HDAC6-220ENST00000477528 NAT10Q9H0A0 1025 aaKnown RBP17.37■□□□□ 0.37
HDAC6-220ENST00000477528 CADPS2Q86UW7 1296 aa17.36■□□□□ 0.37
HDAC6-220ENST00000477528 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.36■□□□□ 0.37
HDAC6-220ENST00000477528 AMOTL1Q8IY63 956 aa17.36■□□□□ 0.37
HDAC6-220ENST00000477528 GLI2P10070 1586 aa17.36■□□□□ 0.37
HDAC6-220ENST00000477528 STARD3NLO95772 234 aa17.36■□□□□ 0.37
HDAC6-220ENST00000477528 GCP02774 474 aa17.36■□□□□ 0.37
HDAC6-220ENST00000477528 BRPF1P55201 1214 aaPredicted RBP17.36■□□□□ 0.37
HDAC6-220ENST00000477528 NOL10Q9BSC4 688 aaKnown RBP17.36■□□□□ 0.37
HDAC6-220ENST00000477528 USP26Q9BXU7 913 aa17.36■□□□□ 0.37
HDAC6-220ENST00000477528 INO80Q9ULG1 1556 aaPredicted RBP17.36■□□□□ 0.37
HDAC6-220ENST00000477528 SART3Q15020 963 aaKnown RBP17.35■□□□□ 0.37
HDAC6-220ENST00000477528 RAB3GAP1Q15042 981 aa17.35■□□□□ 0.37
HDAC6-220ENST00000477528 FAM177BA6PVY3 158 aa17.35■□□□□ 0.37
HDAC6-220ENST00000477528 SPATA32Q96LK8 384 aa17.35■□□□□ 0.37
HDAC6-220ENST00000477528 TMOD3Q9NYL9 352 aa17.35■□□□□ 0.37
HDAC6-220ENST00000477528 TNMDQ9H2S6 317 aa17.34■□□□□ 0.37
HDAC6-220ENST00000477528 AKAP2Q9Y2D5 859 aa17.34■□□□□ 0.37
HDAC6-220ENST00000477528 GRM8O00222 908 aa17.34■□□□□ 0.37
HDAC6-220ENST00000477528 ANKRD13DQ6ZTN6 518 aa17.34■□□□□ 0.37
HDAC6-220ENST00000477528 CEP152O94986 1710 aa17.34■□□□□ 0.37
HDAC6-220ENST00000477528 LINS1Q8NG48 757 aa17.33■□□□□ 0.37
HDAC6-220ENST00000477528 TRIM5Q9C035 493 aa17.33■□□□□ 0.37
HDAC6-220ENST00000477528 CFAP45Q9UL16 551 aa17.33■□□□□ 0.37
HDAC6-220ENST00000477528 R3HCC1Q9Y3T6 440 aaKnown RBP17.33■□□□□ 0.37
HDAC6-220ENST00000477528 HOXB7P09629 217 aa17.33■□□□□ 0.37
HDAC6-220ENST00000477528 CEBPZQ03701 1054 aaKnown RBP17.33■□□□□ 0.37
HDAC6-220ENST00000477528 PHAXQ9H814 394 aaKnown RBP17.33■□□□□ 0.36
HDAC6-220ENST00000477528 STK38Q15208 465 aa17.33■□□□□ 0.36
HDAC6-220ENST00000477528 TPD52L1Q16890 204 aaPredicted RBP17.32■□□□□ 0.36
HDAC6-220ENST00000477528 UBE3BQ7Z3V4 1068 aa17.32■□□□□ 0.36
HDAC6-220ENST00000477528 U3KPZ7 1027 aaPredicted RBP17.32■□□□□ 0.36
HDAC6-220ENST00000477528 PLEKHG1Q9ULL1 1385 aa17.32■□□□□ 0.36
HDAC6-220ENST00000477528 OTUD7AQ8TE49 926 aaPredicted RBP17.32■□□□□ 0.36
HDAC6-220ENST00000477528 FBXW7Q969H0 707 aa17.32■□□□□ 0.36
HDAC6-220ENST00000477528 G3V3G9 751 aa17.32■□□□□ 0.36
HDAC6-220ENST00000477528 DCAF8Q5TAQ9 597 aa17.32■□□□□ 0.36
HDAC6-220ENST00000477528 TTC41PQ6P2S7 1318 aa17.32■□□□□ 0.36
HDAC6-220ENST00000477528 IFIT1P09914 478 aaKnown RBP17.32■□□□□ 0.36
HDAC6-220ENST00000477528 XAGE3Q8WTP9 111 aa17.32■□□□□ 0.36
HDAC6-220ENST00000477528 PHF23Q9BUL5 403 aaPredicted RBP17.32■□□□□ 0.36
HDAC6-220ENST00000477528 NUP62CLQ9H1M0 184 aa17.31■□□□□ 0.36
HDAC6-220ENST00000477528 RNMTO43148 476 aaKnown RBP17.31■□□□□ 0.36
HDAC6-220ENST00000477528 CHRNA2Q15822 529 aa17.31■□□□□ 0.36
HDAC6-220ENST00000477528 CREBRFQ8IUR6 639 aa17.31■□□□□ 0.36
HDAC6-220ENST00000477528 NPHP3Q7Z494 1330 aa17.31■□□□□ 0.36
HDAC6-220ENST00000477528 HMGB1P09429 215 aaKnown RBP17.31■□□□□ 0.36
HDAC6-220ENST00000477528 CCDC183Q5T5S1 534 aa17.31■□□□□ 0.36
HDAC6-220ENST00000477528 ZSCAN30Q86W11 494 aa17.31■□□□□ 0.36
HDAC6-220ENST00000477528 MPHOSPH8Q99549 860 aa17.31■□□□□ 0.36
HDAC6-220ENST00000477528 PPRC1Q5VV67 1664 aaKnown RBP17.3■□□□□ 0.36
HDAC6-220ENST00000477528 CHMLP26374 656 aa17.3■□□□□ 0.36
HDAC6-220ENST00000477528 COPS6Q7L5N1 327 aa17.3■□□□□ 0.36
HDAC6-220ENST00000477528 FERMT3Q86UX7 667 aa17.3■□□□□ 0.36
HDAC6-220ENST00000477528 C19orf44Q9H6X5 657 aa17.3■□□□□ 0.36
HDAC6-220ENST00000477528 QRICH2Q9H0J4 1663 aa17.3■□□□□ 0.36
HDAC6-220ENST00000477528 ATP5J2-PTCD1G3V325 749 aa17.3■□□□□ 0.36
HDAC6-220ENST00000477528 STX6O43752 255 aa17.3■□□□□ 0.36
HDAC6-220ENST00000477528 XBP1P17861 261 aa17.3■□□□□ 0.36
HDAC6-220ENST00000477528 SLC39A6Q13433 755 aa17.3■□□□□ 0.36
HDAC6-220ENST00000477528 CCDC85AQ96PX6 553 aaPredicted RBP17.3■□□□□ 0.36
HDAC6-220ENST00000477528 IMMTQ16891 758 aaKnown RBP17.3■□□□□ 0.36
HDAC6-220ENST00000477528 CWC25Q9NXE8 425 aaPredicted RBP17.3■□□□□ 0.36
HDAC6-220ENST00000477528 CDK12Q9NYV4 1490 aaPredicted RBP17.3■□□□□ 0.36
HDAC6-220ENST00000477528 TPM2P07951 284 aa17.3■□□□□ 0.36
HDAC6-220ENST00000477528 NACAP1Q9BZK3 213 aa17.29■□□□□ 0.36
HDAC6-220ENST00000477528 SCAND2PQ9GZW5 306 aaPredicted RBP17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms