RNA–Protein interactions for RNA: ENST00000475375.1

VPS36-203, Transcript of vacuolar protein sorting 36 homolog, humanhuman

TSL 2

Gene VPS36, Length 754 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-203ENST00000475375 SLC39A6Q13433 755 aa27.84■■■□□ 2.05
VPS36-203ENST00000475375 CYP19A1P11511 503 aaPredicted RBP27.83■■■□□ 2.05
VPS36-203ENST00000475375 RNMTO43148 476 aaKnown RBP27.82■■■□□ 2.04
VPS36-203ENST00000475375 NFIXQ14938 502 aa27.82■■■□□ 2.04
VPS36-203ENST00000475375 NARFQ9UHQ1 456 aa27.82■■■□□ 2.04
VPS36-203ENST00000475375 COL15A1P39059 1388 aa27.82■■■□□ 2.04
VPS36-203ENST00000475375 ADAMTS7Q9UKP4 1686 aa27.81■■■□□ 2.04
VPS36-203ENST00000475375 HMOX1P09601 288 aa27.81■■■□□ 2.04
VPS36-203ENST00000475375 SMC1BQ8NDV3 1235 aa27.8■■■□□ 2.04
VPS36-203ENST00000475375 ZBTB1Q9Y2K1 713 aa27.8■■■□□ 2.04
VPS36-203ENST00000475375 TNRC6CQ9HCJ0 1690 aaKnown RBP27.79■■■□□ 2.04
VPS36-203ENST00000475375 SERPINB2P05120 415 aa27.78■■■□□ 2.04
VPS36-203ENST00000475375 SBF1O95248 1867 aa27.77■■■□□ 2.04
VPS36-203ENST00000475375 LMNB1P20700 586 aa27.77■■■□□ 2.04
VPS36-203ENST00000475375 MRC1P22897 1456 aa27.76■■■□□ 2.04
VPS36-203ENST00000475375 ZC3H4Q9UPT8 1303 aaKnown RBP27.76■■■□□ 2.03
VPS36-203ENST00000475375 CANXP27824 592 aaKnown RBP27.76■■■□□ 2.03
VPS36-203ENST00000475375 C2CD5Q86YS7 1000 aa27.76■■■□□ 2.03
VPS36-203ENST00000475375 TTLL6Q8N841 843 aa27.76■■■□□ 2.03
VPS36-203ENST00000475375 BICDL1Q6ZP65 573 aa27.75■■■□□ 2.03
VPS36-203ENST00000475375 JMYQ8N9B5 988 aa27.75■■■□□ 2.03
VPS36-203ENST00000475375 MTHFSDQ2M296 383 aaKnown RBP27.74■■■□□ 2.03
VPS36-203ENST00000475375 BCL2L12Q9HB09 334 aa27.74■■■□□ 2.03
VPS36-203ENST00000475375 AFDNP55196 1824 aaKnown RBP27.74■■■□□ 2.03
VPS36-203ENST00000475375 H0YIN7 160 aa27.73■■■□□ 2.03
VPS36-203ENST00000475375 AMER1Q5JTC6 1135 aaPredicted RBP27.73■■■□□ 2.03
VPS36-203ENST00000475375 VSIG10Q8N0Z9 540 aa27.73■■■□□ 2.03
VPS36-203ENST00000475375 PCNTO95613 3336 aa27.72■■■□□ 2.03
VPS36-203ENST00000475375 VEGFAP15692 232 aaPredicted RBP27.72■■■□□ 2.03
VPS36-203ENST00000475375 TTC5Q8N0Z6 440 aa27.72■■■□□ 2.03
VPS36-203ENST00000475375 GLTPD2A6NH11 291 aa27.71■■■□□ 2.03
VPS36-203ENST00000475375 COL13A1Q5TAT6 717 aaPredicted RBP27.71■■■□□ 2.03
VPS36-203ENST00000475375 DIAPH1O60610 1272 aaKnown RBP27.7■■■□□ 2.02
VPS36-203ENST00000475375 STARD3NLO95772 234 aa27.7■■■□□ 2.02
VPS36-203ENST00000475375 CARMIL3Q8ND23 1372 aa27.7■■■□□ 2.02
VPS36-203ENST00000475375 NRXN2Q9P2S2 1712 aa27.7■■■□□ 2.02
VPS36-203ENST00000475375 PRELPP51888 382 aa27.69■■■□□ 2.02
VPS36-203ENST00000475375 ZNF330Q9Y3S2 320 aaPredicted RBP27.69■■■□□ 2.02
VPS36-203ENST00000475375 A0A087WZG4 1122 aa27.68■■■□□ 2.02
VPS36-203ENST00000475375 ZNF622Q969S3 477 aaKnown RBP eCLIP27.67■■■□□ 2.022e-6■■□□□ 14.2
VPS36-203ENST00000475375 ZNF219Q9P2Y4 722 aaPredicted RBP27.67■■■□□ 2.02
VPS36-203ENST00000475375 DLEC1Q9Y238 1755 aa27.67■■■□□ 2.02
VPS36-203ENST00000475375 VIRMAQ69YN4 1812 aaKnown RBP27.67■■■□□ 2.02
VPS36-203ENST00000475375 NFKBIEO00221 500 aa27.66■■■□□ 2.02
VPS36-203ENST00000475375 CAPN15O75808 1086 aa27.66■■■□□ 2.02
VPS36-203ENST00000475375 EIF5P55010 431 aaKnown RBP27.65■■■□□ 2.02
VPS36-203ENST00000475375 CC2D1BQ5T0F9 858 aaKnown RBP27.65■■■□□ 2.02
VPS36-203ENST00000475375 TEFQ10587 303 aa27.64■■■□□ 2.02
VPS36-203ENST00000475375 TBC1D9BQ66K14 1250 aa27.64■■■□□ 2.02
VPS36-203ENST00000475375 DPY19L2Q6NUT2 758 aa27.64■■■□□ 2.02
VPS36-203ENST00000475375 TNS4Q8IZW8 715 aa27.64■■■□□ 2.02
VPS36-203ENST00000475375 TIAM2Q8IVF5 1701 aa27.64■■■□□ 2.01
VPS36-203ENST00000475375 CCDC24Q8N4L8 307 aa27.63■■■□□ 2.01
VPS36-203ENST00000475375 NPHP1O15259 732 aa27.62■■■□□ 2.01
VPS36-203ENST00000475375 C21orf2O43822 256 aa27.62■■■□□ 2.01
VPS36-203ENST00000475375 PDE6BP35913 854 aa27.62■■■□□ 2.01
VPS36-203ENST00000475375 CCER1Q8TC90 406 aaPredicted RBP27.62■■■□□ 2.01
VPS36-203ENST00000475375 ZNF496Q96IT1 587 aaPredicted RBP27.62■■■□□ 2.01
VPS36-203ENST00000475375 TBC1D2BQ9UPU7 963 aa27.62■■■□□ 2.01
VPS36-203ENST00000475375 KIF7Q2M1P5 1343 aa27.62■■■□□ 2.01
VPS36-203ENST00000475375 UBR2Q8IWV8 1755 aa27.61■■■□□ 2.01
VPS36-203ENST00000475375 U2SURPO15042 1029 aaKnown RBP27.61■■■□□ 2.01
VPS36-203ENST00000475375 CNGB1Q14028 1251 aaPredicted RBP27.61■■■□□ 2.01
VPS36-203ENST00000475375 NPM2Q86SE8 214 aaKnown RBP27.61■■■□□ 2.01
VPS36-203ENST00000475375 ERFEQ4G0M1 354 aa27.6■■■□□ 2.01
VPS36-203ENST00000475375 BRIP1Q9BX63 1249 aa27.6■■■□□ 2.01
VPS36-203ENST00000475375 TEX13AQ9BXU3 409 aaPredicted RBP27.6■■■□□ 2.01
VPS36-203ENST00000475375 PDZRN3Q9UPQ7 1066 aa27.6■■■□□ 2.01
VPS36-203ENST00000475375 HEG1Q9ULI3 1381 aa27.6■■■□□ 2.01
VPS36-203ENST00000475375 GNAT3A8MTJ3 354 aa27.59■■■□□ 2.01
VPS36-203ENST00000475375 ZNF790Q6PG37 636 aa27.59■■■□□ 2.01
VPS36-203ENST00000475375 CCDC88AQ3V6T2 1871 aa27.59■■■□□ 2.01
VPS36-203ENST00000475375 PRR5LQ6MZQ0 368 aa27.58■■■□□ 2.01
VPS36-203ENST00000475375 GAS2L2Q8NHY3 880 aa27.57■■■□□ 2
VPS36-203ENST00000475375 HSPA1AP0DMV8 641 aaKnown RBP27.56■■■□□ 2
VPS36-203ENST00000475375 HSPA1BP0DMV9 641 aaKnown RBP27.56■■■□□ 2
VPS36-203ENST00000475375 IL17REQ8NFR9 667 aa27.56■■■□□ 2
VPS36-203ENST00000475375 SETDB2Q96T68 719 aa27.56■■■□□ 2
VPS36-203ENST00000475375 POTECB2RU33 542 aa27.55■■■□□ 2
VPS36-203ENST00000475375 IL6STP40189 918 aaPredicted RBP27.55■■■□□ 2
VPS36-203ENST00000475375 CNBD1Q8NA66 436 aa27.55■■■□□ 2
VPS36-203ENST00000475375 FMNL2Q96PY5 1086 aa27.55■■■□□ 2
VPS36-203ENST00000475375 A1BGP04217 495 aa27.54■■■□□ 2
VPS36-203ENST00000475375 SCN7AQ01118 1682 aa27.54■■■□□ 2
VPS36-203ENST00000475375 ANKRD31Q8N7Z5 1873 aa27.54■■■□□ 2
VPS36-203ENST00000475375 TAOK3Q9H2K8 898 aa27.54■■■□□ 2
VPS36-203ENST00000475375 ST5P78524 1137 aa27.53■■■□□ 2
VPS36-203ENST00000475375 PER1O15534 1290 aaPredicted RBP27.52■■■□□ 2
VPS36-203ENST00000475375 CNKSR1Q969H4 720 aa27.52■■■□□ 2
VPS36-203ENST00000475375 COL11A2P13942 1736 aaPredicted RBP27.51■■□□□ 1.99
VPS36-203ENST00000475375 CAMTA2O94983 1202 aa27.5■■□□□ 1.99
VPS36-203ENST00000475375 LTBP3Q9NS15 1303 aa27.49■■□□□ 1.99
VPS36-203ENST00000475375 STYK1Q6J9G0 422 aa27.49■■□□□ 1.99
VPS36-203ENST00000475375 PRPF40BQ6NWY9 871 aaKnown RBP27.49■■□□□ 1.99
VPS36-203ENST00000475375 DZIP3Q86Y13 1208 aaKnown RBP27.49■■□□□ 1.99
VPS36-203ENST00000475375 COL3A1P02461 1466 aaPredicted RBP27.49■■□□□ 1.99
VPS36-203ENST00000475375 BTBD11A6QL63 1104 aa27.48■■□□□ 1.99
VPS36-203ENST00000475375 DDNO94850 711 aaPredicted RBP27.48■■□□□ 1.99
VPS36-203ENST00000475375 SOGA3Q5TF21 947 aa27.48■■□□□ 1.99
VPS36-203ENST00000475375 CHADLQ6NUI6 762 aa27.48■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms