RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-223ENST00000474643 USPL1Q5W0Q7 1092 aa20.13■□□□□ 0.81
VARS-223ENST00000474643 KCPQ6ZWJ8 1503 aa20.12■□□□□ 0.81
VARS-223ENST00000474643 SOS1Q07889 1333 aaPredicted RBP20.12■□□□□ 0.81
VARS-223ENST00000474643 ZNF316A6NFI3 1004 aaPredicted RBP20.12■□□□□ 0.81
VARS-223ENST00000474643 ZBTB1Q9Y2K1 713 aa20.12■□□□□ 0.81
VARS-223ENST00000474643 BTBD11A6QL63 1104 aa20.11■□□□□ 0.81
VARS-223ENST00000474643 DPEP1P16444 411 aa20.11■□□□□ 0.81
VARS-223ENST00000474643 ZNF790Q6PG37 636 aa20.11■□□□□ 0.81
VARS-223ENST00000474643 FMNL2Q96PY5 1086 aa20.11■□□□□ 0.81
VARS-223ENST00000474643 TEX13AQ9BXU3 409 aaPredicted RBP20.11■□□□□ 0.81
VARS-223ENST00000474643 N4BP2Q86UW6 1770 aaPredicted RBP20.11■□□□□ 0.81
VARS-223ENST00000474643 ADAMTS7Q9UKP4 1686 aa20.1■□□□□ 0.81
VARS-223ENST00000474643 ARHGAP27Q6ZUM4 889 aa20.1■□□□□ 0.81
VARS-223ENST00000474643 IL17REQ8NFR9 667 aa20.1■□□□□ 0.81
VARS-223ENST00000474643 RSPH6AQ9H0K4 717 aa20.1■□□□□ 0.81
VARS-223ENST00000474643 A0A087WZG4 1122 aa20.09■□□□□ 0.81
VARS-223ENST00000474643 PIM2Q9P1W9 311 aa20.09■□□□□ 0.81
VARS-223ENST00000474643 NARFQ9UHQ1 456 aa20.09■□□□□ 0.81
VARS-223ENST00000474643 KIF13BQ9NQT8 1826 aa20.09■□□□□ 0.81
VARS-223ENST00000474643 DDR1Q08345 913 aa20.08■□□□□ 0.81
VARS-223ENST00000474643 ZNF496Q96IT1 587 aaPredicted RBP20.08■□□□□ 0.81
VARS-223ENST00000474643 PHACTR3Q96KR7 559 aa20.08■□□□□ 0.81
VARS-223ENST00000474643 HEG1Q9ULI3 1381 aa20.08■□□□□ 0.8
VARS-223ENST00000474643 NPHP1O15259 732 aa20.07■□□□□ 0.8
VARS-223ENST00000474643 DALRD3Q5D0E6 543 aaKnown RBP20.07■□□□□ 0.8
VARS-223ENST00000474643 UBR2Q8IWV8 1755 aa20.06■□□□□ 0.8
VARS-223ENST00000474643 POLRMTO00411 1230 aaKnown RBP20.06■□□□□ 0.8
VARS-223ENST00000474643 RALBP1Q15311 655 aa20.06■□□□□ 0.8
VARS-223ENST00000474643 BICDL1Q6ZP65 573 aa20.05■□□□□ 0.8
VARS-223ENST00000474643 NFIXQ14938 502 aa20.04■□□□□ 0.8
VARS-223ENST00000474643 MCM10Q7L590 875 aa20.04■□□□□ 0.8
VARS-223ENST00000474643 CHRNA5P30532 468 aa20.03■□□□□ 0.8
VARS-223ENST00000474643 ADCY9O60503 1353 aa20.03■□□□□ 0.8
VARS-223ENST00000474643 CEMIPQ8WUJ3 1361 aa20.03■□□□□ 0.8
VARS-223ENST00000474643 SERPINB2P05120 415 aa20.02■□□□□ 0.8
VARS-223ENST00000474643 TM4SF1P30408 202 aa20.02■□□□□ 0.8
VARS-223ENST00000474643 PNNQ9H307 717 aaKnown RBP20.02■□□□□ 0.8
VARS-223ENST00000474643 KIAA1551Q9HCM1 1747 aa20.02■□□□□ 0.79
VARS-223ENST00000474643 MAPK8IP3Q9UPT6 1336 aa20.02■□□□□ 0.79
VARS-223ENST00000474643 IL6STP40189 918 aaPredicted RBP20.01■□□□□ 0.79
VARS-223ENST00000474643 SIPA1L3O60292 1781 aaPredicted RBP20■□□□□ 0.79
VARS-223ENST00000474643 EIF5P55010 431 aaKnown RBP20■□□□□ 0.79
VARS-223ENST00000474643 TBC1D2BQ9UPU7 963 aa20■□□□□ 0.79
VARS-223ENST00000474643 HTATSF1O43719 755 aaKnown RBP19.99■□□□□ 0.79
VARS-223ENST00000474643 A1BGP04217 495 aa19.99■□□□□ 0.79
VARS-223ENST00000474643 DCTN1Q14203 1278 aa19.99■□□□□ 0.79
VARS-223ENST00000474643 H0YIN7 160 aa19.98■□□□□ 0.79
VARS-223ENST00000474643 KCNQ3O43525 872 aa19.98■□□□□ 0.79
VARS-223ENST00000474643 SNRPA1P09661 255 aaKnown RBP19.98■□□□□ 0.79
VARS-223ENST00000474643 MYBBP1AQ9BQG0 1328 aaKnown RBP19.98■□□□□ 0.79
VARS-223ENST00000474643 KCNA3P22001 575 aa19.97■□□□□ 0.79
VARS-223ENST00000474643 C2CD5Q86YS7 1000 aa19.97■□□□□ 0.79
VARS-223ENST00000474643 SETDB2Q96T68 719 aa19.97■□□□□ 0.79
VARS-223ENST00000474643 BCL2L12Q9HB09 334 aa19.97■□□□□ 0.79
VARS-223ENST00000474643 CARMIL3Q8ND23 1372 aa19.96■□□□□ 0.79
VARS-223ENST00000474643 TAF7Q15545 349 aaPredicted RBP19.96■□□□□ 0.79
VARS-223ENST00000474643 C9orf131Q5VYM1 1079 aa19.96■□□□□ 0.79
VARS-223ENST00000474643 TBC1D9BQ66K14 1250 aa19.96■□□□□ 0.79
VARS-223ENST00000474643 DZIP3Q86Y13 1208 aaKnown RBP19.96■□□□□ 0.79
VARS-223ENST00000474643 RNF181Q9P0P0 153 aa19.96■□□□□ 0.79
VARS-223ENST00000474643 ZNF652Q9Y2D9 606 aa19.96■□□□□ 0.79
VARS-223ENST00000474643 BRCA1P38398 1863 aaKnown RBP19.95■□□□□ 0.78
VARS-223ENST00000474643 ARFGEF1Q9Y6D6 1849 aa19.95■□□□□ 0.78
VARS-223ENST00000474643 SCN7AQ01118 1682 aa19.94■□□□□ 0.78
VARS-223ENST00000474643 ST5P78524 1137 aa19.94■□□□□ 0.78
VARS-223ENST00000474643 C16orf71Q8IYS4 520 aaPredicted RBP19.94■□□□□ 0.78
VARS-223ENST00000474643 TTLL6Q8N841 843 aa19.94■□□□□ 0.78
VARS-223ENST00000474643 CNBD1Q8NA66 436 aa19.94■□□□□ 0.78
VARS-223ENST00000474643 PNISRQ8TF01 805 aaKnown RBP19.94■□□□□ 0.78
VARS-223ENST00000474643 USP16Q9Y5T5 823 aa19.94■□□□□ 0.78
VARS-223ENST00000474643 AFDNP55196 1824 aaKnown RBP19.94■□□□□ 0.78
VARS-223ENST00000474643 PDE6BP35913 854 aa19.93■□□□□ 0.78
VARS-223ENST00000474643 PIP4K2AP48426 406 aaPredicted RBP19.93■□□□□ 0.78
VARS-223ENST00000474643 ZNF622Q969S3 477 aaKnown RBP eCLIP19.93■□□□□ 0.78
VARS-223ENST00000474643 PRKRIP1Q9H875 184 aaPredicted RBP19.93■□□□□ 0.78
VARS-223ENST00000474643 NFE2L2Q16236 605 aa19.92■□□□□ 0.78
VARS-223ENST00000474643 PDZRN3Q9UPQ7 1066 aa19.92■□□□□ 0.78
VARS-223ENST00000474643 MIS18AQ9NYP9 233 aa19.91■□□□□ 0.78
VARS-223ENST00000474643 KDM2BQ8NHM5 1336 aa19.91■□□□□ 0.78
VARS-223ENST00000474643 NRXN2Q9P2S2 1712 aa19.9■□□□□ 0.78
VARS-223ENST00000474643 PRAMEF22A3QJZ6 481 aa19.9■□□□□ 0.78
VARS-223ENST00000474643 CAMTA2O94983 1202 aa19.9■□□□□ 0.78
VARS-223ENST00000474643 NBPF5PQ86XG9 351 aaPredicted RBP19.9■□□□□ 0.78
VARS-223ENST00000474643 CCDC24Q8N4L8 307 aa19.9■□□□□ 0.78
VARS-223ENST00000474643 BRIP1Q9BX63 1249 aa19.9■□□□□ 0.78
VARS-223ENST00000474643 ANP32CO43423 234 aa19.89■□□□□ 0.77
VARS-223ENST00000474643 PRR5LQ6MZQ0 368 aa19.89■□□□□ 0.77
VARS-223ENST00000474643 ZNF219Q9P2Y4 722 aaPredicted RBP19.89■□□□□ 0.77
VARS-223ENST00000474643 RASSF7Q02833 373 aa19.88■□□□□ 0.77
VARS-223ENST00000474643 GTF2E1P29083 439 aaPredicted RBP19.87■□□□□ 0.77
VARS-223ENST00000474643 WDR43Q15061 677 aaKnown RBP eCLIP19.87■□□□□ 0.77
VARS-223ENST00000474643 NGEFQ8N5V2 710 aa19.87■□□□□ 0.77
VARS-223ENST00000474643 KIF3CO14782 793 aa19.86■□□□□ 0.77
VARS-223ENST00000474643 HSPA6P17066 643 aa19.86■□□□□ 0.77
VARS-223ENST00000474643 LMNB1P20700 586 aa19.86■□□□□ 0.77
VARS-223ENST00000474643 CLEC4GQ6UXB4 293 aa19.86■□□□□ 0.77
VARS-223ENST00000474643 NMRK2Q9NPI5 230 aa19.86■□□□□ 0.77
VARS-223ENST00000474643 NIP7Q9Y221 180 aaKnown RBP eCLIP19.86■□□□□ 0.77
VARS-223ENST00000474643 FAM177BA6PVY3 158 aa19.85■□□□□ 0.77
VARS-223ENST00000474643 TOMM70O94826 608 aa19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms