RNA–Protein interactions for RNA: ENST00000469163.1

NUP50-214, Transcript of nucleoporin 50, humanhuman

TSL 2

Gene NUP50, Length 3,507 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-214ENST00000469163 NCAPGQ9BPX3 1015 aa11.98□□□□□ -0.49
NUP50-214ENST00000469163 NEURL4Q96JN8 1562 aa11.98□□□□□ -0.49
NUP50-214ENST00000469163 RARSP54136 660 aaKnown RBP11.98□□□□□ -0.49
NUP50-214ENST00000469163 CABP4P57796 275 aa11.98□□□□□ -0.49
NUP50-214ENST00000469163 KIAA0232Q92628 1395 aa11.98□□□□□ -0.49
NUP50-214ENST00000469163 SATB1Q01826 763 aa11.98□□□□□ -0.49
NUP50-214ENST00000469163 TBC1D2Q9BYX2 928 aa11.98□□□□□ -0.49
NUP50-214ENST00000469163 TMEM57Q8N5G2 664 aa11.97□□□□□ -0.49
NUP50-214ENST00000469163 BCL2L12Q9HB09 334 aa11.97□□□□□ -0.49
NUP50-214ENST00000469163 WWC3Q9ULE0 1092 aa11.97□□□□□ -0.49
NUP50-214ENST00000469163 KDM5AP29375 1690 aaKnown RBP11.97□□□□□ -0.49
NUP50-214ENST00000469163 GAS2L2Q8NHY3 880 aa11.97□□□□□ -0.49
NUP50-214ENST00000469163 LNPKQ9C0E8 428 aa11.97□□□□□ -0.49
NUP50-214ENST00000469163 EDC4Q6P2E9 1401 aaKnown RBP11.97□□□□□ -0.49
NUP50-214ENST00000469163 TOM1O60784 492 aa11.97□□□□□ -0.49
NUP50-214ENST00000469163 QRICH2Q9H0J4 1663 aa11.96□□□□□ -0.49
NUP50-214ENST00000469163 NRXN1Q9ULB1 1477 aa11.96□□□□□ -0.49
NUP50-214ENST00000469163 TDO2P48775 406 aa11.96□□□□□ -0.49
NUP50-214ENST00000469163 USP6P35125 1406 aa11.96□□□□□ -0.5
NUP50-214ENST00000469163 SLFN14P0C7P3 912 aa11.95□□□□□ -0.5
NUP50-214ENST00000469163 MAP2K1Q02750 393 aaPredicted RBP11.95□□□□□ -0.5
NUP50-214ENST00000469163 HS1BP3Q53T59 392 aa11.95□□□□□ -0.5
NUP50-214ENST00000469163 OGFRQ9NZT2 677 aa11.95□□□□□ -0.5
NUP50-214ENST00000469163 CPS1P31327 1500 aa11.95□□□□□ -0.5
NUP50-214ENST00000469163 IPO8O15397 1037 aaKnown RBP11.95□□□□□ -0.5
NUP50-214ENST00000469163 FAM98CQ17RN3 349 aaKnown RBP11.95□□□□□ -0.5
NUP50-214ENST00000469163 ANKRD45Q5TZF3 282 aa11.95□□□□□ -0.5
NUP50-214ENST00000469163 CENPQQ7L2Z9 268 aaPredicted RBP11.95□□□□□ -0.5
NUP50-214ENST00000469163 BRPF1P55201 1214 aaPredicted RBP11.95□□□□□ -0.5
NUP50-214ENST00000469163 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.95□□□□□ -0.5
NUP50-214ENST00000469163 UBR1Q8IWV7 1749 aa11.95□□□□□ -0.5
NUP50-214ENST00000469163 KIAA2012Q0VF49 1180 aa11.94□□□□□ -0.5
NUP50-214ENST00000469163 NBPF20Q3BBV1 942 aa11.94□□□□□ -0.5
NUP50-214ENST00000469163 DNAJC21Q5F1R6 531 aaKnown RBP11.94□□□□□ -0.5
NUP50-214ENST00000469163 G2E3Q7L622 706 aa11.94□□□□□ -0.5
NUP50-214ENST00000469163 IP6K1Q92551 441 aa11.94□□□□□ -0.5
NUP50-214ENST00000469163 TTC21AQ8NDW8 1320 aa11.94□□□□□ -0.5
NUP50-214ENST00000469163 POLR3AO14802 1390 aaPredicted RBP11.94□□□□□ -0.5
NUP50-214ENST00000469163 FLT4P35916 1363 aa11.94□□□□□ -0.5
NUP50-214ENST00000469163 DHX16O60231 1041 aaKnown RBP11.94□□□□□ -0.5
NUP50-214ENST00000469163 SEC24BO95487 1268 aa11.94□□□□□ -0.5
NUP50-214ENST00000469163 TRIM27P14373 513 aa11.94□□□□□ -0.5
NUP50-214ENST00000469163 SMIM5Q71RC9 77 aa11.94□□□□□ -0.5
NUP50-214ENST00000469163 CEP120Q8N960 986 aa11.94□□□□□ -0.5
NUP50-214ENST00000469163 PRIMPOLQ96LW4 560 aa11.94□□□□□ -0.5
NUP50-214ENST00000469163 FEZ1Q99689 392 aa11.94□□□□□ -0.5
NUP50-214ENST00000469163 PHF23Q9BUL5 403 aaPredicted RBP11.94□□□□□ -0.5
NUP50-214ENST00000469163 CEP170BQ9Y4F5 1589 aaPredicted RBP11.93□□□□□ -0.5
NUP50-214ENST00000469163 BICDL1Q6ZP65 573 aa11.93□□□□□ -0.5
NUP50-214ENST00000469163 PHAXQ9H814 394 aaKnown RBP11.93□□□□□ -0.5
NUP50-214ENST00000469163 ATP5J2-PTCD1G3V325 749 aa11.93□□□□□ -0.5
NUP50-214ENST00000469163 RASSF4Q9H2L5 321 aa11.93□□□□□ -0.5
NUP50-214ENST00000469163 UTRNP46939 3433 aa11.93□□□□□ -0.5
NUP50-214ENST00000469163 ICE2Q659A1 982 aa11.93□□□□□ -0.5
NUP50-214ENST00000469163 MFAP1P55081 439 aaKnown RBP11.92□□□□□ -0.5
NUP50-214ENST00000469163 IL17REQ8NFR9 667 aa11.92□□□□□ -0.5
NUP50-214ENST00000469163 FAM212AQ96EL1 285 aa11.92□□□□□ -0.5
NUP50-214ENST00000469163 RIC3Q7Z5B4 369 aa11.92□□□□□ -0.5
NUP50-214ENST00000469163 WDR63Q8IWG1 891 aa11.92□□□□□ -0.5
NUP50-214ENST00000469163 PLEKHF1Q96S99 279 aa11.92□□□□□ -0.5
NUP50-214ENST00000469163 SIL1Q9H173 461 aa11.92□□□□□ -0.5
NUP50-214ENST00000469163 TERF2Q15554 542 aa11.91□□□□□ -0.5
NUP50-214ENST00000469163 SKOR2Q2VWA4 1001 aaPredicted RBP11.91□□□□□ -0.5
NUP50-214ENST00000469163 CALR3Q96L12 384 aaKnown RBP11.91□□□□□ -0.5
NUP50-214ENST00000469163 GBP4Q96PP9 640 aa11.91□□□□□ -0.5
NUP50-214ENST00000469163 C9orf78Q9NZ63 289 aaPredicted RBP11.91□□□□□ -0.5
NUP50-214ENST00000469163 ADGRL3Q9HAR2 1447 aa11.91□□□□□ -0.5
NUP50-214ENST00000469163 ARID4AP29374 1257 aaPredicted RBP11.91□□□□□ -0.5
NUP50-214ENST00000469163 GYS2P54840 703 aa11.91□□□□□ -0.5
NUP50-214ENST00000469163 DRC1Q96MC2 740 aa11.91□□□□□ -0.5
NUP50-214ENST00000469163 ZBTB3Q9H5J0 574 aa11.91□□□□□ -0.5
NUP50-214ENST00000469163 CCDC39Q9UFE4 941 aa11.91□□□□□ -0.5
NUP50-214ENST00000469163 MCM5P33992 734 aa11.91□□□□□ -0.5
NUP50-214ENST00000469163 RAD51AP2Q09MP3 1159 aa11.91□□□□□ -0.5
NUP50-214ENST00000469163 TSHZ3Q63HK5 1081 aa11.91□□□□□ -0.5
NUP50-214ENST00000469163 ATF7IPQ6VMQ6 1270 aa11.91□□□□□ -0.5
NUP50-214ENST00000469163 C10orf67Q8IYJ2 551 aa11.91□□□□□ -0.5
NUP50-214ENST00000469163 NINLQ9Y2I6 1382 aa11.91□□□□□ -0.5
NUP50-214ENST00000469163 MYO3AQ8NEV4 1616 aa11.91□□□□□ -0.5
NUP50-214ENST00000469163 CHPF2Q9P2E5 772 aa11.9□□□□□ -0.5
NUP50-214ENST00000469163 USP19O94966 1318 aa11.9□□□□□ -0.5
NUP50-214ENST00000469163 TAF7Q15545 349 aaPredicted RBP11.9□□□□□ -0.5
NUP50-214ENST00000469163 ARHGEF25Q86VW2 580 aa11.9□□□□□ -0.5
NUP50-214ENST00000469163 PRDM16Q9HAZ2 1276 aa11.9□□□□□ -0.5
NUP50-214ENST00000469163 DDX49Q9Y6V7 483 aaKnown RBP11.9□□□□□ -0.5
NUP50-214ENST00000469163 NRXN3Q9Y4C0 1643 aa11.9□□□□□ -0.5
NUP50-214ENST00000469163 IQGAP1P46940 1657 aa11.9□□□□□ -0.5
NUP50-214ENST00000469163 ATP7BP35670 1465 aa11.9□□□□□ -0.5
NUP50-214ENST00000469163 NSD2O96028 1365 aa11.9□□□□□ -0.51
NUP50-214ENST00000469163 IGHDP01880 384 aa11.9□□□□□ -0.51
NUP50-214ENST00000469163 SPG7Q9UQ90 795 aa11.9□□□□□ -0.51
NUP50-214ENST00000469163 GOLGA6L6A8MZA4 724 aa11.89□□□□□ -0.51
NUP50-214ENST00000469163 SMARCA5O60264 1052 aaPredicted RBP11.89□□□□□ -0.51
NUP50-214ENST00000469163 GPTP24298 496 aa11.89□□□□□ -0.51
NUP50-214ENST00000469163 SGSM3Q96HU1 749 aa11.89□□□□□ -0.51
NUP50-214ENST00000469163 CHAF1AQ13111 956 aaPredicted RBP11.89□□□□□ -0.51
NUP50-214ENST00000469163 CCDC24Q8N4L8 307 aa11.89□□□□□ -0.51
NUP50-214ENST00000469163 NKTRP30414 1462 aaKnown RBP11.89□□□□□ -0.51
NUP50-214ENST00000469163 NOP2P46087 812 aaKnown RBP11.89□□□□□ -0.51
NUP50-214ENST00000469163 HNRNPH2P55795 449 aaKnown RBP11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms