RNA–Protein interactions for RNA: ENST00000468807.1

TTC28-204, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 2

Gene TTC28, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-204ENST00000468807 DDR1Q08345 913 aa29.07■■■□□ 2.24
TTC28-204ENST00000468807 ZNF496Q96IT1 587 aaPredicted RBP29.07■■■□□ 2.24
TTC28-204ENST00000468807 BCS1LQ9Y276 419 aa29.07■■■□□ 2.24
TTC28-204ENST00000468807 DPEP1P16444 411 aa29.05■■■□□ 2.24
TTC28-204ENST00000468807 RTF1Q92541 710 aaKnown RBP29.05■■■□□ 2.24
TTC28-204ENST00000468807 BTBD11A6QL63 1104 aa29.04■■■□□ 2.24
TTC28-204ENST00000468807 GIGYF1O75420 1035 aaPredicted RBP29.04■■■□□ 2.24
TTC28-204ENST00000468807 FCHSD2O94868 740 aa29.04■■■□□ 2.24
TTC28-204ENST00000468807 ATP10DQ9P241 1426 aa29.03■■■□□ 2.24
TTC28-204ENST00000468807 CEMIPQ8WUJ3 1361 aa29.03■■■□□ 2.24
TTC28-204ENST00000468807 HEG1Q9ULI3 1381 aa29.03■■■□□ 2.24
TTC28-204ENST00000468807 NARFQ9UHQ1 456 aa29.03■■■□□ 2.24
TTC28-204ENST00000468807 ZNF330Q9Y3S2 320 aaPredicted RBP29.03■■■□□ 2.24
TTC28-204ENST00000468807 MCM10Q7L590 875 aa29.02■■■□□ 2.24
TTC28-204ENST00000468807 FMNL2Q96PY5 1086 aa29.02■■■□□ 2.24
TTC28-204ENST00000468807 POLRMTO00411 1230 aaKnown RBP29.01■■■□□ 2.23
TTC28-204ENST00000468807 TM4SF1P30408 202 aa29■■■□□ 2.23
TTC28-204ENST00000468807 C1QTNF8P60827 252 aa29■■■□□ 2.23
TTC28-204ENST00000468807 ZNF526Q8TF50 670 aaPredicted RBP29■■■□□ 2.23
TTC28-204ENST00000468807 TEX13AQ9BXU3 409 aaPredicted RBP29■■■□□ 2.23
TTC28-204ENST00000468807 KCNQ3O43525 872 aa28.99■■■□□ 2.23
TTC28-204ENST00000468807 NEFMP07197 916 aa28.98■■■□□ 2.23
TTC28-204ENST00000468807 NFIXQ14938 502 aa28.98■■■□□ 2.23
TTC28-204ENST00000468807 BRCA1P38398 1863 aaKnown RBP28.97■■■□□ 2.23
TTC28-204ENST00000468807 DCTN1Q14203 1278 aa28.97■■■□□ 2.23
TTC28-204ENST00000468807 A0A087WZG4 1122 aa28.96■■■□□ 2.23
TTC28-204ENST00000468807 EIF5P55010 431 aaKnown RBP28.96■■■□□ 2.23
TTC28-204ENST00000468807 ARHGAP27Q6ZUM4 889 aa28.96■■■□□ 2.23
TTC28-204ENST00000468807 NPM2Q86SE8 214 aaKnown RBP28.96■■■□□ 2.23
TTC28-204ENST00000468807 GPBP1L1Q9HC44 474 aaPredicted RBP28.96■■■□□ 2.23
TTC28-204ENST00000468807 AFDNP55196 1824 aaKnown RBP28.95■■■□□ 2.23
TTC28-204ENST00000468807 BICDL1Q6ZP65 573 aa28.95■■■□□ 2.22
TTC28-204ENST00000468807 BCL2L12Q9HB09 334 aa28.95■■■□□ 2.22
TTC28-204ENST00000468807 PIM2Q9P1W9 311 aa28.95■■■□□ 2.22
TTC28-204ENST00000468807 ADCY9O60503 1353 aa28.95■■■□□ 2.22
TTC28-204ENST00000468807 KCNA3P22001 575 aa28.94■■■□□ 2.22
TTC28-204ENST00000468807 CHRNA5P30532 468 aa28.94■■■□□ 2.22
TTC28-204ENST00000468807 A1BGP04217 495 aa28.93■■■□□ 2.22
TTC28-204ENST00000468807 TBC1D2BQ9UPU7 963 aa28.93■■■□□ 2.22
TTC28-204ENST00000468807 SENP3-EIF4A1A0A087X0R7 540 aa28.92■■■□□ 2.22
TTC28-204ENST00000468807 SERPINB2P05120 415 aa28.91■■■□□ 2.22
TTC28-204ENST00000468807 DALRD3Q5D0E6 543 aaKnown RBP28.91■■■□□ 2.22
TTC28-204ENST00000468807 HTATSF1O43719 755 aaKnown RBP28.9■■■□□ 2.22
TTC28-204ENST00000468807 IL6STP40189 918 aaPredicted RBP28.9■■■□□ 2.22
TTC28-204ENST00000468807 ARFGEF1Q9Y6D6 1849 aa28.9■■■□□ 2.22
TTC28-204ENST00000468807 DLG5Q8TDM6 1919 aa28.88■■■□□ 2.21
TTC28-204ENST00000468807 PRAMEF22A3QJZ6 481 aa28.88■■■□□ 2.21
TTC28-204ENST00000468807 PIP4K2AP48426 406 aaPredicted RBP28.88■■■□□ 2.21
TTC28-204ENST00000468807 USP16Q9Y5T5 823 aa28.88■■■□□ 2.21
TTC28-204ENST00000468807 SCN7AQ01118 1682 aa28.88■■■□□ 2.21
TTC28-204ENST00000468807 NRXN2Q9P2S2 1712 aa28.87■■■□□ 2.21
TTC28-204ENST00000468807 DDX10Q13206 875 aaKnown RBP28.87■■■□□ 2.21
TTC28-204ENST00000468807 TBC1D9BQ66K14 1250 aa28.87■■■□□ 2.21
TTC28-204ENST00000468807 SNRPA1P09661 255 aaKnown RBP28.86■■■□□ 2.21
TTC28-204ENST00000468807 MAPK8IP3Q9UPT6 1336 aa28.86■■■□□ 2.21
TTC28-204ENST00000468807 TAF7Q15545 349 aaPredicted RBP28.85■■■□□ 2.21
TTC28-204ENST00000468807 MIS18AQ9NYP9 233 aa28.85■■■□□ 2.21
TTC28-204ENST00000468807 RALBP1Q15311 655 aa28.84■■■□□ 2.21
TTC28-204ENST00000468807 PNNQ9H307 717 aaKnown RBP28.84■■■□□ 2.21
TTC28-204ENST00000468807 DZIP3Q86Y13 1208 aaKnown RBP28.83■■■□□ 2.21
TTC28-204ENST00000468807 PLEKHF1Q96S99 279 aa28.83■■■□□ 2.21
TTC28-204ENST00000468807 CARMIL3Q8ND23 1372 aa28.83■■■□□ 2.21
TTC28-204ENST00000468807 NFE2L2Q16236 605 aa28.82■■■□□ 2.2
TTC28-204ENST00000468807 C2CD5Q86YS7 1000 aa28.82■■■□□ 2.2
TTC28-204ENST00000468807 NPHP1O15259 732 aa28.81■■■□□ 2.2
TTC28-204ENST00000468807 CAMTA2O94983 1202 aa28.8■■■□□ 2.2
TTC28-204ENST00000468807 C9orf131Q5VYM1 1079 aa28.8■■■□□ 2.2
TTC28-204ENST00000468807 CCDC24Q8N4L8 307 aa28.8■■■□□ 2.2
TTC28-204ENST00000468807 THUMPD2Q9BTF0 503 aaKnown RBP28.8■■■□□ 2.2
TTC28-204ENST00000468807 H0YIN7 160 aa28.79■■■□□ 2.2
TTC28-204ENST00000468807 SETDB2Q96T68 719 aa28.79■■■□□ 2.2
TTC28-204ENST00000468807 BCORQ6W2J9 1755 aa28.79■■■□□ 2.2
TTC28-204ENST00000468807 DLEC1Q9Y238 1755 aa28.78■■■□□ 2.2
TTC28-204ENST00000468807 PNISRQ8TF01 805 aaKnown RBP28.78■■■□□ 2.2
TTC28-204ENST00000468807 PRR5LQ6MZQ0 368 aa28.76■■■□□ 2.19
TTC28-204ENST00000468807 TTLL6Q8N841 843 aa28.76■■■□□ 2.19
TTC28-204ENST00000468807 ANKRD31Q8N7Z5 1873 aa28.75■■■□□ 2.19
TTC28-204ENST00000468807 CNBD1Q8NA66 436 aa28.75■■■□□ 2.19
TTC28-204ENST00000468807 RNF181Q9P0P0 153 aa28.75■■■□□ 2.19
TTC28-204ENST00000468807 KDM3BQ7LBC6 1761 aa28.75■■■□□ 2.19
TTC28-204ENST00000468807 ZNF622Q969S3 477 aaKnown RBP eCLIP28.74■■■□□ 2.19
TTC28-204ENST00000468807 ZNF652Q9Y2D9 606 aa28.74■■■□□ 2.19
TTC28-204ENST00000468807 LAMB4A4D0S4 1761 aa28.74■■■□□ 2.19
TTC28-204ENST00000468807 NBPF26B4DH59 902 aa28.73■■■□□ 2.19
TTC28-204ENST00000468807 PDE6BP35913 854 aa28.73■■■□□ 2.19
TTC28-204ENST00000468807 NBPF10Q6P3W6 841 aaKnown RBP28.73■■■□□ 2.19
TTC28-204ENST00000468807 NBPF15Q8N660 670 aa28.73■■■□□ 2.19
TTC28-204ENST00000468807 BRIP1Q9BX63 1249 aa28.73■■■□□ 2.19
TTC28-204ENST00000468807 MYBBP1AQ9BQG0 1328 aaKnown RBP28.72■■■□□ 2.19
TTC28-204ENST00000468807 ST5P78524 1137 aa28.72■■■□□ 2.19
TTC28-204ENST00000468807 RASSF7Q02833 373 aa28.72■■■□□ 2.19
TTC28-204ENST00000468807 CEP350Q5VT06 3117 aa28.72■■■□□ 2.19
TTC28-204ENST00000468807 KIF3CO14782 793 aa28.71■■■□□ 2.19
TTC28-204ENST00000468807 NGEFQ8N5V2 710 aa28.71■■■□□ 2.19
TTC28-204ENST00000468807 SBF1O95248 1867 aa28.7■■■□□ 2.19
TTC28-204ENST00000468807 RIPK4P57078 832 aa28.7■■■□□ 2.18
TTC28-204ENST00000468807 COL11A2P13942 1736 aaPredicted RBP28.69■■■□□ 2.18
TTC28-204ENST00000468807 CLEC4GQ6UXB4 293 aa28.69■■■□□ 2.18
TTC28-204ENST00000468807 NBPF5PQ86XG9 351 aaPredicted RBP28.69■■■□□ 2.18
TTC28-204ENST00000468807 PDZRN3Q9UPQ7 1066 aa28.69■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms