RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 SOS1Q07889 1333 aaPredicted RBP23.37■■□□□ 1.33
COL7A1-206ENST00000466591 ARHGAP27Q6ZUM4 889 aa23.37■■□□□ 1.33
COL7A1-206ENST00000466591 ZBTB1Q9Y2K1 713 aa23.37■■□□□ 1.33
COL7A1-206ENST00000466591 TEX13AQ9BXU3 409 aaPredicted RBP23.36■■□□□ 1.33
COL7A1-206ENST00000466591 KCPQ6ZWJ8 1503 aa23.36■■□□□ 1.33
COL7A1-206ENST00000466591 N4BP2Q86UW6 1770 aaPredicted RBP23.36■■□□□ 1.33
COL7A1-206ENST00000466591 BTBD11A6QL63 1104 aa23.35■■□□□ 1.33
COL7A1-206ENST00000466591 ZNF790Q6PG37 636 aa23.35■■□□□ 1.33
COL7A1-206ENST00000466591 FMNL2Q96PY5 1086 aa23.35■■□□□ 1.33
COL7A1-206ENST00000466591 A0A087WZG4 1122 aa23.34■■□□□ 1.33
COL7A1-206ENST00000466591 IL17REQ8NFR9 667 aa23.34■■□□□ 1.33
COL7A1-206ENST00000466591 RSPH6AQ9H0K4 717 aa23.34■■□□□ 1.33
COL7A1-206ENST00000466591 PIM2Q9P1W9 311 aa23.34■■□□□ 1.33
COL7A1-206ENST00000466591 NARFQ9UHQ1 456 aa23.34■■□□□ 1.33
COL7A1-206ENST00000466591 KIF13BQ9NQT8 1826 aa23.33■■□□□ 1.33
COL7A1-206ENST00000466591 ADAMTS7Q9UKP4 1686 aa23.33■■□□□ 1.33
COL7A1-206ENST00000466591 DDR1Q08345 913 aa23.33■■□□□ 1.33
COL7A1-206ENST00000466591 NPHP1O15259 732 aa23.32■■□□□ 1.32
COL7A1-206ENST00000466591 DALRD3Q5D0E6 543 aaKnown RBP23.32■■□□□ 1.32
COL7A1-206ENST00000466591 ZNF496Q96IT1 587 aaPredicted RBP23.32■■□□□ 1.32
COL7A1-206ENST00000466591 PHACTR3Q96KR7 559 aa23.32■■□□□ 1.32
COL7A1-206ENST00000466591 HEG1Q9ULI3 1381 aa23.31■■□□□ 1.32
COL7A1-206ENST00000466591 BICDL1Q6ZP65 573 aa23.31■■□□□ 1.32
COL7A1-206ENST00000466591 POLRMTO00411 1230 aaKnown RBP23.3■■□□□ 1.32
COL7A1-206ENST00000466591 UBR2Q8IWV8 1755 aa23.29■■□□□ 1.32
COL7A1-206ENST00000466591 CHRNA5P30532 468 aa23.28■■□□□ 1.32
COL7A1-206ENST00000466591 NFIXQ14938 502 aa23.28■■□□□ 1.32
COL7A1-206ENST00000466591 SERPINB2P05120 415 aa23.27■■□□□ 1.32
COL7A1-206ENST00000466591 TM4SF1P30408 202 aa23.27■■□□□ 1.32
COL7A1-206ENST00000466591 MCM10Q7L590 875 aa23.27■■□□□ 1.32
COL7A1-206ENST00000466591 ADCY9O60503 1353 aa23.26■■□□□ 1.31
COL7A1-206ENST00000466591 KIAA1551Q9HCM1 1747 aa23.25■■□□□ 1.31
COL7A1-206ENST00000466591 CEMIPQ8WUJ3 1361 aa23.25■■□□□ 1.31
COL7A1-206ENST00000466591 IL6STP40189 918 aaPredicted RBP23.24■■□□□ 1.31
COL7A1-206ENST00000466591 PNNQ9H307 717 aaKnown RBP23.24■■□□□ 1.31
COL7A1-206ENST00000466591 TBC1D2BQ9UPU7 963 aa23.24■■□□□ 1.31
COL7A1-206ENST00000466591 MAPK8IP3Q9UPT6 1336 aa23.24■■□□□ 1.31
COL7A1-206ENST00000466591 EIF5P55010 431 aaKnown RBP23.23■■□□□ 1.31
COL7A1-206ENST00000466591 SIPA1L3O60292 1781 aaPredicted RBP23.22■■□□□ 1.31
COL7A1-206ENST00000466591 A1BGP04217 495 aa23.22■■□□□ 1.31
COL7A1-206ENST00000466591 DCTN1Q14203 1278 aa23.22■■□□□ 1.31
COL7A1-206ENST00000466591 H0YIN7 160 aa23.21■■□□□ 1.31
COL7A1-206ENST00000466591 KCNQ3O43525 872 aa23.21■■□□□ 1.31
COL7A1-206ENST00000466591 HTATSF1O43719 755 aaKnown RBP23.21■■□□□ 1.31
COL7A1-206ENST00000466591 SNRPA1P09661 255 aaKnown RBP23.21■■□□□ 1.31
COL7A1-206ENST00000466591 KCNA3P22001 575 aa23.21■■□□□ 1.31
COL7A1-206ENST00000466591 C2CD5Q86YS7 1000 aa23.21■■□□□ 1.31
COL7A1-206ENST00000466591 C9orf131Q5VYM1 1079 aa23.2■■□□□ 1.3
COL7A1-206ENST00000466591 BCL2L12Q9HB09 334 aa23.2■■□□□ 1.3
COL7A1-206ENST00000466591 TBC1D9BQ66K14 1250 aa23.19■■□□□ 1.3
COL7A1-206ENST00000466591 DZIP3Q86Y13 1208 aaKnown RBP23.19■■□□□ 1.3
COL7A1-206ENST00000466591 SETDB2Q96T68 719 aa23.19■■□□□ 1.3
COL7A1-206ENST00000466591 RNF181Q9P0P0 153 aa23.19■■□□□ 1.3
COL7A1-206ENST00000466591 CARMIL3Q8ND23 1372 aa23.18■■□□□ 1.3
COL7A1-206ENST00000466591 TAF7Q15545 349 aaPredicted RBP23.18■■□□□ 1.3
COL7A1-206ENST00000466591 C16orf71Q8IYS4 520 aaPredicted RBP23.18■■□□□ 1.3
COL7A1-206ENST00000466591 ZNF652Q9Y2D9 606 aa23.18■■□□□ 1.3
COL7A1-206ENST00000466591 BRCA1P38398 1863 aaKnown RBP23.17■■□□□ 1.3
COL7A1-206ENST00000466591 ST5P78524 1137 aa23.17■■□□□ 1.3
COL7A1-206ENST00000466591 TTLL6Q8N841 843 aa23.17■■□□□ 1.3
COL7A1-206ENST00000466591 ZNF622Q969S3 477 aaKnown RBP eCLIP23.17■■□□□ 1.3
COL7A1-206ENST00000466591 ARFGEF1Q9Y6D6 1849 aa23.17■■□□□ 1.3
COL7A1-206ENST00000466591 PDE6BP35913 854 aa23.16■■□□□ 1.3
COL7A1-206ENST00000466591 PIP4K2AP48426 406 aaPredicted RBP23.16■■□□□ 1.3
COL7A1-206ENST00000466591 CNBD1Q8NA66 436 aa23.16■■□□□ 1.3
COL7A1-206ENST00000466591 PNISRQ8TF01 805 aaKnown RBP23.16■■□□□ 1.3
COL7A1-206ENST00000466591 USP16Q9Y5T5 823 aa23.16■■□□□ 1.3
COL7A1-206ENST00000466591 AFDNP55196 1824 aaKnown RBP23.16■■□□□ 1.3
COL7A1-206ENST00000466591 KDM2BQ8NHM5 1336 aa23.14■■□□□ 1.3
COL7A1-206ENST00000466591 SCN7AQ01118 1682 aa23.14■■□□□ 1.29
COL7A1-206ENST00000466591 PDZRN3Q9UPQ7 1066 aa23.14■■□□□ 1.29
COL7A1-206ENST00000466591 RALBP1Q15311 655 aa23.13■■□□□ 1.29
COL7A1-206ENST00000466591 MIS18AQ9NYP9 233 aa23.13■■□□□ 1.29
COL7A1-206ENST00000466591 PRAMEF22A3QJZ6 481 aa23.12■■□□□ 1.29
COL7A1-206ENST00000466591 CAMTA2O94983 1202 aa23.12■■□□□ 1.29
COL7A1-206ENST00000466591 NFE2L2Q16236 605 aa23.12■■□□□ 1.29
COL7A1-206ENST00000466591 CCDC24Q8N4L8 307 aa23.12■■□□□ 1.29
COL7A1-206ENST00000466591 BRIP1Q9BX63 1249 aa23.12■■□□□ 1.29
COL7A1-206ENST00000466591 NBPF5PQ86XG9 351 aaPredicted RBP23.11■■□□□ 1.29
COL7A1-206ENST00000466591 ZNF219Q9P2Y4 722 aaPredicted RBP23.11■■□□□ 1.29
COL7A1-206ENST00000466591 NRXN2Q9P2S2 1712 aa23.11■■□□□ 1.29
COL7A1-206ENST00000466591 KIF3CO14782 793 aa23.1■■□□□ 1.29
COL7A1-206ENST00000466591 DDX10Q13206 875 aaKnown RBP23.1■■□□□ 1.29
COL7A1-206ENST00000466591 PRR5LQ6MZQ0 368 aa23.1■■□□□ 1.29
COL7A1-206ENST00000466591 HSPA6P17066 643 aa23.09■■□□□ 1.29
COL7A1-206ENST00000466591 RASSF7Q02833 373 aa23.09■■□□□ 1.29
COL7A1-206ENST00000466591 NMRK2Q9NPI5 230 aa23.09■■□□□ 1.29
COL7A1-206ENST00000466591 TOMM70O94826 608 aa23.08■■□□□ 1.29
COL7A1-206ENST00000466591 LMNB1P20700 586 aa23.08■■□□□ 1.29
COL7A1-206ENST00000466591 GTF2E1P29083 439 aaPredicted RBP23.08■■□□□ 1.29
COL7A1-206ENST00000466591 NGEFQ8N5V2 710 aa23.08■■□□□ 1.29
COL7A1-206ENST00000466591 CLEC4GQ6UXB4 293 aa23.07■■□□□ 1.28
COL7A1-206ENST00000466591 NIP7Q9Y221 180 aaKnown RBP eCLIP23.07■■□□□ 1.28
COL7A1-206ENST00000466591 FAM177BA6PVY3 158 aa23.06■■□□□ 1.28
COL7A1-206ENST00000466591 THUMPD2Q9BTF0 503 aaKnown RBP23.06■■□□□ 1.28
COL7A1-206ENST00000466591 DLEC1Q9Y238 1755 aa23.05■■□□□ 1.28
COL7A1-206ENST00000466591 KIF6Q6ZMV9 814 aa23.05■■□□□ 1.28
COL7A1-206ENST00000466591 CNKSR1Q969H4 720 aa23.05■■□□□ 1.28
COL7A1-206ENST00000466591 PLEKHF1Q96S99 279 aa23.05■■□□□ 1.28
COL7A1-206ENST00000466591 BCORQ6W2J9 1755 aa23.04■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms