RNA–Protein interactions for RNA: ENST00000466410.5

LIMS2-212, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 2

Gene LIMS2, Length 2,592 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-212ENST00000466410 CHPF2Q9P2E5 772 aa23.58■■□□□ 1.37
LIMS2-212ENST00000466410 CHD2O14647 1828 aaKnown RBP23.58■■□□□ 1.37
LIMS2-212ENST00000466410 NBPF7P0C2Y1 421 aaPredicted RBP23.58■■□□□ 1.37
LIMS2-212ENST00000466410 CUL4AQ13619 759 aa23.57■■□□□ 1.36
LIMS2-212ENST00000466410 ANKLE2Q86XL3 938 aa23.57■■□□□ 1.36
LIMS2-212ENST00000466410 ZBTB7CA1YPR0 619 aa23.57■■□□□ 1.36
LIMS2-212ENST00000466410 MAP4K4O95819 1239 aaPredicted RBP23.57■■□□□ 1.36
LIMS2-212ENST00000466410 RAB11FIP3O75154 756 aa23.56■■□□□ 1.36
LIMS2-212ENST00000466410 UPF3BQ9BZI7 483 aaKnown RBP23.56■■□□□ 1.36
LIMS2-212ENST00000466410 PI4KAP2A4QPH2 592 aa23.56■■□□□ 1.36
LIMS2-212ENST00000466410 SRGAP3O43295 1099 aa23.56■■□□□ 1.36
LIMS2-212ENST00000466410 PI4KAP1Q8N8J0 262 aa23.56■■□□□ 1.36
LIMS2-212ENST00000466410 RHPN1Q8TCX5 695 aa23.56■■□□□ 1.36
LIMS2-212ENST00000466410 ANXA1P04083 346 aa23.55■■□□□ 1.36
LIMS2-212ENST00000466410 RBM27Q9P2N5 1060 aaKnown RBP23.55■■□□□ 1.36
LIMS2-212ENST00000466410 BEND3Q5T5X7 828 aa23.55■■□□□ 1.36
LIMS2-212ENST00000466410 CCDC173Q0VFZ6 552 aa23.54■■□□□ 1.36
LIMS2-212ENST00000466410 PI4K2BQ8TCG2 481 aa23.54■■□□□ 1.36
LIMS2-212ENST00000466410 DNAAF4Q8WXU2 420 aa23.54■■□□□ 1.36
LIMS2-212ENST00000466410 PPP1R9BQ96SB3 815 aa23.54■■□□□ 1.36
LIMS2-212ENST00000466410 NFAT5O94916 1531 aa23.54■■□□□ 1.36
LIMS2-212ENST00000466410 MED1Q15648 1581 aaPredicted RBP23.54■■□□□ 1.36
LIMS2-212ENST00000466410 IL17RAQ96F46 866 aa23.54■■□□□ 1.36
LIMS2-212ENST00000466410 LRRC59Q96AG4 307 aaKnown RBP23.53■■□□□ 1.36
LIMS2-212ENST00000466410 BRD1O95696 1058 aa23.52■■□□□ 1.36
LIMS2-212ENST00000466410 NSFL1CQ9UNZ2 370 aaKnown RBP23.52■■□□□ 1.36
LIMS2-212ENST00000466410 HOXB7P09629 217 aa23.52■■□□□ 1.36
LIMS2-212ENST00000466410 KIF1BPQ96EK5 621 aa23.52■■□□□ 1.36
LIMS2-212ENST00000466410 RGPD2P0DJD1 1756 aa23.52■■□□□ 1.36
LIMS2-212ENST00000466410 MPRIPQ6WCQ1 1025 aa23.51■■□□□ 1.35
LIMS2-212ENST00000466410 INTS4Q96HW7 963 aaKnown RBP23.51■■□□□ 1.35
LIMS2-212ENST00000466410 KDM3BQ7LBC6 1761 aa23.51■■□□□ 1.35
LIMS2-212ENST00000466410 HSPA4P34932 840 aa23.51■■□□□ 1.35
LIMS2-212ENST00000466410 PSME1Q06323 249 aa23.51■■□□□ 1.35
LIMS2-212ENST00000466410 TEFQ10587 303 aa23.51■■□□□ 1.35
LIMS2-212ENST00000466410 ZNF530Q6P9A1 599 aaPredicted RBP23.51■■□□□ 1.35
LIMS2-212ENST00000466410 RBSNQ9H1K0 784 aa23.51■■□□□ 1.35
LIMS2-212ENST00000466410 BTBD11A6QL63 1104 aa23.5■■□□□ 1.35
LIMS2-212ENST00000466410 PRIM1P49642 420 aaKnown RBP23.5■■□□□ 1.35
LIMS2-212ENST00000466410 ESCO1Q5FWF5 840 aa23.5■■□□□ 1.35
LIMS2-212ENST00000466410 ANP32BQ92688 251 aaKnown RBP23.5■■□□□ 1.35
LIMS2-212ENST00000466410 TMEM63CQ9P1W3 806 aa23.5■■□□□ 1.35
LIMS2-212ENST00000466410 NAP1L5Q96NT1 182 aaPredicted RBP23.49■■□□□ 1.35
LIMS2-212ENST00000466410 ADCY9O60503 1353 aa23.49■■□□□ 1.35
LIMS2-212ENST00000466410 AKAP4Q5JQC9 854 aa23.49■■□□□ 1.35
LIMS2-212ENST00000466410 SGSM2O43147 1006 aa23.48■■□□□ 1.35
LIMS2-212ENST00000466410 EPB41L2O43491 1005 aaKnown RBP23.47■■□□□ 1.35
LIMS2-212ENST00000466410 PLEKHG5O94827 1062 aa23.47■■□□□ 1.35
LIMS2-212ENST00000466410 KCNH5Q8NCM2 988 aa23.47■■□□□ 1.35
LIMS2-212ENST00000466410 RAD50Q92878 1312 aa23.46■■□□□ 1.35
LIMS2-212ENST00000466410 PLEKHO1Q53GL0 409 aaPredicted RBP23.46■■□□□ 1.35
LIMS2-212ENST00000466410 CHMP4AQ9BY43 222 aa23.46■■□□□ 1.35
LIMS2-212ENST00000466410 LMO7Q8WWI1 1683 aa23.45■■□□□ 1.35
LIMS2-212ENST00000466410 CNTROBQ8N137 903 aa23.45■■□□□ 1.34
LIMS2-212ENST00000466410 SYCE3A1L190 88 aa23.45■■□□□ 1.34
LIMS2-212ENST00000466410 LSG1Q9H089 658 aaKnown RBP23.45■■□□□ 1.34
LIMS2-212ENST00000466410 RNMTO43148 476 aaKnown RBP23.44■■□□□ 1.34
LIMS2-212ENST00000466410 DBF4Q9UBU7 674 aaPredicted RBP23.44■■□□□ 1.34
LIMS2-212ENST00000466410 SNX14Q9Y5W7 946 aa23.44■■□□□ 1.34
LIMS2-212ENST00000466410 PXDNQ92626 1479 aa23.44■■□□□ 1.34
LIMS2-212ENST00000466410 OS9Q13438 667 aaPredicted RBP23.44■■□□□ 1.34
LIMS2-212ENST00000466410 PROSER3Q2NL68 480 aa23.44■■□□□ 1.34
LIMS2-212ENST00000466410 HSP90AB4PQ58FF6 505 aa23.44■■□□□ 1.34
LIMS2-212ENST00000466410 XPCQ01831 940 aaPredicted RBP23.43■■□□□ 1.34
LIMS2-212ENST00000466410 FOXD4L6Q3SYB3 417 aaPredicted RBP23.43■■□□□ 1.34
LIMS2-212ENST00000466410 CWC27Q6UX04 472 aaKnown RBP23.43■■□□□ 1.34
LIMS2-212ENST00000466410 FOXD4L3Q6VB84 417 aaPredicted RBP23.43■■□□□ 1.34
LIMS2-212ENST00000466410 MAP3K2Q9Y2U5 619 aa23.43■■□□□ 1.34
LIMS2-212ENST00000466410 MBD3O95983 291 aa23.43■■□□□ 1.34
LIMS2-212ENST00000466410 LRSAM1Q6UWE0 723 aa23.43■■□□□ 1.34
LIMS2-212ENST00000466410 RASEFQ8IZ41 740 aa23.43■■□□□ 1.34
LIMS2-212ENST00000466410 NPHP4O75161 1426 aaPredicted RBP23.42■■□□□ 1.34
LIMS2-212ENST00000466410 GCP02774 474 aa23.42■■□□□ 1.34
LIMS2-212ENST00000466410 C1orf141Q5JVX7 400 aa23.42■■□□□ 1.34
LIMS2-212ENST00000466410 SPG7Q9UQ90 795 aa23.42■■□□□ 1.34
LIMS2-212ENST00000466410 USP42Q9H9J4 1324 aaKnown RBP23.41■■□□□ 1.34
LIMS2-212ENST00000466410 PRAMEF22A3QJZ6 481 aa23.41■■□□□ 1.34
LIMS2-212ENST00000466410 GIGYF1O75420 1035 aaPredicted RBP23.41■■□□□ 1.34
LIMS2-212ENST00000466410 MTX1Q13505 466 aa23.41■■□□□ 1.34
LIMS2-212ENST00000466410 AMOTQ4VCS5 1084 aa23.41■■□□□ 1.34
LIMS2-212ENST00000466410 C9orf78Q9NZ63 289 aaPredicted RBP23.41■■□□□ 1.34
LIMS2-212ENST00000466410 ADGRL3Q9HAR2 1447 aa23.41■■□□□ 1.34
LIMS2-212ENST00000466410 ARHGEF25Q86VW2 580 aa23.4■■□□□ 1.34
LIMS2-212ENST00000466410 ZSCAN30Q86W11 494 aa23.4■■□□□ 1.34
LIMS2-212ENST00000466410 TTC14Q96N46 770 aa23.4■■□□□ 1.34
LIMS2-212ENST00000466410 PHRF1Q9P1Y6 1649 aaKnown RBP23.4■■□□□ 1.34
LIMS2-212ENST00000466410 GLRX3O76003 335 aaKnown RBP23.4■■□□□ 1.34
LIMS2-212ENST00000466410 CWF19L2Q2TBE0 894 aaKnown RBP23.4■■□□□ 1.34
LIMS2-212ENST00000466410 ORAI2Q96SN7 254 aa23.4■■□□□ 1.34
LIMS2-212ENST00000466410 LARP6Q9BRS8 491 aaKnown RBP23.4■■□□□ 1.34
LIMS2-212ENST00000466410 GDPD2Q9HCC8 539 aa23.4■■□□□ 1.34
LIMS2-212ENST00000466410 PA2G4Q9UQ80 394 aaKnown RBP23.4■■□□□ 1.34
LIMS2-212ENST00000466410 TTC41PQ6P2S7 1318 aa23.39■■□□□ 1.34
LIMS2-212ENST00000466410 KIAA1211Q6ZU35 1233 aa23.39■■□□□ 1.34
LIMS2-212ENST00000466410 CLASRPQ8N2M8 674 aaKnown RBP23.39■■□□□ 1.33
LIMS2-212ENST00000466410 AK2P54819 239 aa23.38■■□□□ 1.33
LIMS2-212ENST00000466410 KSR2Q6VAB6 950 aa23.38■■□□□ 1.33
LIMS2-212ENST00000466410 PDLIM2Q96JY6 352 aa23.38■■□□□ 1.33
LIMS2-212ENST00000466410 WDR33Q9C0J8 1336 aaKnown RBP23.38■■□□□ 1.33
LIMS2-212ENST00000466410 CRYBG1Q9Y4K1 1723 aa23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms