RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 COL16A1Q07092 1604 aaPredicted RBP22.75■■□□□ 1.23
COL9A3-205ENST00000466192 NBR1Q14596 966 aa22.74■■□□□ 1.23
COL9A3-205ENST00000466192 DDX21Q9NR30 783 aaKnown RBP eCLIP22.74■■□□□ 1.23
COL9A3-205ENST00000466192 HYPKQ9NX55 129 aa22.74■■□□□ 1.23
COL9A3-205ENST00000466192 LRRFIP2Q9Y608 721 aaKnown RBP22.74■■□□□ 1.23
COL9A3-205ENST00000466192 TTC5Q8N0Z6 440 aa22.74■■□□□ 1.23
COL9A3-205ENST00000466192 GLI3P10071 1580 aa22.74■■□□□ 1.23
COL9A3-205ENST00000466192 UBTFL1P0CB47 393 aaPredicted RBP22.72■■□□□ 1.23
COL9A3-205ENST00000466192 NKX1-1Q15270 411 aaPredicted RBP22.72■■□□□ 1.23
COL9A3-205ENST00000466192 BMP2KLQ5H9B9 411 aa22.72■■□□□ 1.23
COL9A3-205ENST00000466192 USP35Q9P2H5 1018 aa22.72■■□□□ 1.23
COL9A3-205ENST00000466192 PNMA6EA0A0J9YXQ4 647 aa22.72■■□□□ 1.23
COL9A3-205ENST00000466192 ATP8B2P98198 1209 aa22.72■■□□□ 1.23
COL9A3-205ENST00000466192 MAP3K2Q9Y2U5 619 aa22.72■■□□□ 1.23
COL9A3-205ENST00000466192 PHLPP1O60346 1717 aa22.71■■□□□ 1.23
COL9A3-205ENST00000466192 KSR2Q6VAB6 950 aa22.71■■□□□ 1.23
COL9A3-205ENST00000466192 C16orf71Q8IYS4 520 aaPredicted RBP22.71■■□□□ 1.23
COL9A3-205ENST00000466192 DDX54Q8TDD1 881 aaKnown RBP22.71■■□□□ 1.23
COL9A3-205ENST00000466192 TBC1D32Q96NH3 1257 aa22.71■■□□□ 1.23
COL9A3-205ENST00000466192 FMNL2Q96PY5 1086 aa22.71■■□□□ 1.23
COL9A3-205ENST00000466192 LAMB4A4D0S4 1761 aa22.71■■□□□ 1.23
COL9A3-205ENST00000466192 UBR2Q8IWV8 1755 aa22.71■■□□□ 1.23
COL9A3-205ENST00000466192 APBB1O00213 710 aa22.7■■□□□ 1.23
COL9A3-205ENST00000466192 SNRPA1P09661 255 aaKnown RBP22.7■■□□□ 1.23
COL9A3-205ENST00000466192 PLEKHM2Q8IWE5 1019 aa22.7■■□□□ 1.23
COL9A3-205ENST00000466192 SMARCA5O60264 1052 aaPredicted RBP22.7■■□□□ 1.22
COL9A3-205ENST00000466192 USP16Q9Y5T5 823 aa22.7■■□□□ 1.22
COL9A3-205ENST00000466192 TOGARAM1Q9Y4F4 1720 aa22.7■■□□□ 1.22
COL9A3-205ENST00000466192 ERVV-2B6SEH9 535 aa22.69■■□□□ 1.22
COL9A3-205ENST00000466192 NBPF7P0C2Y1 421 aaPredicted RBP22.69■■□□□ 1.22
COL9A3-205ENST00000466192 MFAP1P55081 439 aaKnown RBP22.69■■□□□ 1.22
COL9A3-205ENST00000466192 PAPPAQ13219 1627 aa22.69■■□□□ 1.22
COL9A3-205ENST00000466192 AIMP1Q12904 312 aaKnown RBP22.67■■□□□ 1.22
COL9A3-205ENST00000466192 OTUD7AQ8TE49 926 aaPredicted RBP22.67■■□□□ 1.22
COL9A3-205ENST00000466192 EXOC6BQ9Y2D4 811 aa22.67■■□□□ 1.22
COL9A3-205ENST00000466192 MYL6BP14649 208 aa22.67■■□□□ 1.22
COL9A3-205ENST00000466192 ALDH1L1O75891 902 aa22.65■■□□□ 1.22
COL9A3-205ENST00000466192 DDX58O95786 925 aaKnown RBP22.65■■□□□ 1.22
COL9A3-205ENST00000466192 LRP10Q7Z4F1 713 aa22.65■■□□□ 1.22
COL9A3-205ENST00000466192 PLCH1Q4KWH8 1693 aa22.65■■□□□ 1.22
COL9A3-205ENST00000466192 GSPT1P15170 499 aaKnown RBP22.64■■□□□ 1.21
COL9A3-205ENST00000466192 CWF19L2Q2TBE0 894 aaKnown RBP22.64■■□□□ 1.21
COL9A3-205ENST00000466192 SSH3Q8TE77 659 aa22.64■■□□□ 1.21
COL9A3-205ENST00000466192 KCPQ6ZWJ8 1503 aa22.64■■□□□ 1.21
COL9A3-205ENST00000466192 DISP2A7MBM2 1401 aa22.64■■□□□ 1.21
COL9A3-205ENST00000466192 PIP4K2AP48426 406 aaPredicted RBP22.63■■□□□ 1.21
COL9A3-205ENST00000466192 XAGE3Q8WTP9 111 aa22.63■■□□□ 1.21
COL9A3-205ENST00000466192 C22orf23Q9BZE7 217 aa22.63■■□□□ 1.21
COL9A3-205ENST00000466192 WNK3Q9BYP7 1800 aa22.63■■□□□ 1.21
COL9A3-205ENST00000466192 COPS6Q7L5N1 327 aa22.63■■□□□ 1.21
COL9A3-205ENST00000466192 PPP1R42Q7Z4L9 355 aa22.63■■□□□ 1.21
COL9A3-205ENST00000466192 IBTKQ9P2D0 1353 aaPredicted RBP22.62■■□□□ 1.21
COL9A3-205ENST00000466192 ITGB4P16144 1822 aa22.62■■□□□ 1.21
COL9A3-205ENST00000466192 TTC22Q5TAA0 569 aa22.62■■□□□ 1.21
COL9A3-205ENST00000466192 LINS1Q8NG48 757 aa22.62■■□□□ 1.21
COL9A3-205ENST00000466192 POLA2Q14181 598 aa22.61■■□□□ 1.21
COL9A3-205ENST00000466192 RIC3Q7Z5B4 369 aa22.61■■□□□ 1.21
COL9A3-205ENST00000466192 C9orf78Q9NZ63 289 aaPredicted RBP22.6■■□□□ 1.21
COL9A3-205ENST00000466192 ARFGEF2Q9Y6D5 1785 aa22.6■■□□□ 1.21
COL9A3-205ENST00000466192 LRRCC1Q9C099 1032 aa22.6■■□□□ 1.21
COL9A3-205ENST00000466192 TNS2Q63HR2 1409 aa22.6■■□□□ 1.21
COL9A3-205ENST00000466192 BECN1Q14457 450 aa22.59■■□□□ 1.21
COL9A3-205ENST00000466192 KAT6BQ8WYB5 2073 aa22.59■■□□□ 1.21
COL9A3-205ENST00000466192 NRAPQ86VF7 1730 aa22.59■■□□□ 1.21
COL9A3-205ENST00000466192 SRGAP3O43295 1099 aa22.59■■□□□ 1.21
COL9A3-205ENST00000466192 IGKV5-2P06315 115 aa22.59■■□□□ 1.21
COL9A3-205ENST00000466192 AFDNP55196 1824 aaKnown RBP22.58■■□□□ 1.21
COL9A3-205ENST00000466192 ADAMTS2O95450 1211 aa22.58■■□□□ 1.21
COL9A3-205ENST00000466192 PIP4K2BP78356 416 aa22.58■■□□□ 1.21
COL9A3-205ENST00000466192 TBC1D9Q6ZT07 1266 aa22.58■■□□□ 1.21
COL9A3-205ENST00000466192 TUBGCP6Q96RT7 1819 aa22.57■■□□□ 1.2
COL9A3-205ENST00000466192 GRM8O00222 908 aa22.57■■□□□ 1.2
COL9A3-205ENST00000466192 PTCD1O75127 700 aaKnown RBP22.57■■□□□ 1.2
COL9A3-205ENST00000466192 ANKRD13DQ6ZTN6 518 aa22.57■■□□□ 1.2
COL9A3-205ENST00000466192 UTYO14607 1347 aa22.56■■□□□ 1.2
COL9A3-205ENST00000466192 SALL3Q9BXA9 1300 aa22.56■■□□□ 1.2
COL9A3-205ENST00000466192 TOM1O60784 492 aa22.56■■□□□ 1.2
COL9A3-205ENST00000466192 METTL22Q9BUU2 404 aaPredicted RBP22.56■■□□□ 1.2
COL9A3-205ENST00000466192 TMOD3Q9NYL9 352 aa22.56■■□□□ 1.2
COL9A3-205ENST00000466192 NBPF26B4DH59 902 aa22.56■■□□□ 1.2
COL9A3-205ENST00000466192 NBPF14Q5TI25 921 aa22.56■■□□□ 1.2
COL9A3-205ENST00000466192 NBPF10Q6P3W6 841 aaKnown RBP22.56■■□□□ 1.2
COL9A3-205ENST00000466192 NBPF15Q8N660 670 aa22.56■■□□□ 1.2
COL9A3-205ENST00000466192 OSBPL3Q9H4L5 887 aa22.56■■□□□ 1.2
COL9A3-205ENST00000466192 CDC45O75419 566 aa22.55■■□□□ 1.2
COL9A3-205ENST00000466192 SURF6O75683 361 aaKnown RBP22.55■■□□□ 1.2
COL9A3-205ENST00000466192 PDE1AP54750 535 aa22.55■■□□□ 1.2
COL9A3-205ENST00000466192 MTX1Q13505 466 aa22.55■■□□□ 1.2
COL9A3-205ENST00000466192 ERBB4Q15303 1308 aa22.55■■□□□ 1.2
COL9A3-205ENST00000466192 NEURL1BA8MQ27 555 aa22.55■■□□□ 1.2
COL9A3-205ENST00000466192 NEXNQ0ZGT2 675 aa22.55■■□□□ 1.2
COL9A3-205ENST00000466192 MYD88Q99836 296 aa22.55■■□□□ 1.2
COL9A3-205ENST00000466192 RTL5Q5HYW3 569 aaPredicted RBP22.53■■□□□ 1.2
COL9A3-205ENST00000466192 KAZALD1Q96I82 304 aa22.53■■□□□ 1.2
COL9A3-205ENST00000466192 SDSP20132 328 aa22.53■■□□□ 1.2
COL9A3-205ENST00000466192 PIGBQ92521 554 aa22.53■■□□□ 1.2
COL9A3-205ENST00000466192 SUCLG2Q96I99 432 aa22.53■■□□□ 1.2
COL9A3-205ENST00000466192 RAB11FIP3O75154 756 aa22.52■■□□□ 1.2
COL9A3-205ENST00000466192 NUP188Q5SRE5 1749 aa22.52■■□□□ 1.2
COL9A3-205ENST00000466192 TBC1D2Q9BYX2 928 aa22.52■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms