RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 TTC14Q96N46 770 aa23.67■■□□□ 1.38
SDF4-205ENST00000465727 LIMCH1Q9UPQ0 1083 aa23.67■■□□□ 1.38
SDF4-205ENST00000465727 CCDC61Q9Y6R9 512 aa23.67■■□□□ 1.38
SDF4-205ENST00000465727 SYT1P21579 422 aa23.66■■□□□ 1.38
SDF4-205ENST00000465727 G2E3Q7L622 706 aa23.66■■□□□ 1.38
SDF4-205ENST00000465727 C17orf53Q8N3J3 647 aaPredicted RBP23.66■■□□□ 1.38
SDF4-205ENST00000465727 MPNDQ8N594 471 aa23.66■■□□□ 1.38
SDF4-205ENST00000465727 JARID2Q92833 1246 aaPredicted RBP23.66■■□□□ 1.38
SDF4-205ENST00000465727 CTIFO43310 598 aaKnown RBP23.66■■□□□ 1.38
SDF4-205ENST00000465727 STK31Q9BXU1 1019 aa23.66■■□□□ 1.38
SDF4-205ENST00000465727 ZHX1Q9UKY1 873 aaPredicted RBP23.66■■□□□ 1.38
SDF4-205ENST00000465727 CBX1P83916 185 aa23.65■■□□□ 1.38
SDF4-205ENST00000465727 STAG3Q9UJ98 1225 aa23.65■■□□□ 1.38
SDF4-205ENST00000465727 PXDNLA1KZ92 1463 aa23.65■■□□□ 1.38
SDF4-205ENST00000465727 ZBTB7CA1YPR0 619 aa23.64■■□□□ 1.38
SDF4-205ENST00000465727 NUDT16Q96DE0 195 aaKnown RBP23.64■■□□□ 1.38
SDF4-205ENST00000465727 SMC3Q9UQE7 1217 aa23.64■■□□□ 1.38
SDF4-205ENST00000465727 FAM208AQ9UK61 1670 aaKnown RBP23.64■■□□□ 1.38
SDF4-205ENST00000465727 PNMA6EA0A0J9YXQ4 647 aa23.64■■□□□ 1.37
SDF4-205ENST00000465727 UNC5CLQ8IV45 518 aa23.64■■□□□ 1.37
SDF4-205ENST00000465727 ATP2B3Q16720 1220 aa23.63■■□□□ 1.37
SDF4-205ENST00000465727 KCNF1Q9H3M0 494 aa23.63■■□□□ 1.37
SDF4-205ENST00000465727 TSPYL4Q9UJ04 414 aa23.63■■□□□ 1.37
SDF4-205ENST00000465727 SNX14Q9Y5W7 946 aa23.63■■□□□ 1.37
SDF4-205ENST00000465727 SGSM2O43147 1006 aa23.63■■□□□ 1.37
SDF4-205ENST00000465727 CCDC192P0DO97 292 aa23.63■■□□□ 1.37
SDF4-205ENST00000465727 FEZ1Q99689 392 aa23.63■■□□□ 1.37
SDF4-205ENST00000465727 TTC21BQ7Z4L5 1316 aa23.62■■□□□ 1.37
SDF4-205ENST00000465727 RIOK3O14730 519 aaKnown RBP23.62■■□□□ 1.37
SDF4-205ENST00000465727 PDIA4P13667 645 aaKnown RBP23.62■■□□□ 1.37
SDF4-205ENST00000465727 SYCP1Q15431 976 aa23.62■■□□□ 1.37
SDF4-205ENST00000465727 RTF1Q92541 710 aaKnown RBP23.62■■□□□ 1.37
SDF4-205ENST00000465727 SOS1Q07889 1333 aaPredicted RBP23.62■■□□□ 1.37
SDF4-205ENST00000465727 FIBPO43427 364 aa23.61■■□□□ 1.37
SDF4-205ENST00000465727 RAB11FIP3O75154 756 aa23.61■■□□□ 1.37
SDF4-205ENST00000465727 AK2P54819 239 aa23.61■■□□□ 1.37
SDF4-205ENST00000465727 GIMAP6Q6P9H5 292 aa23.61■■□□□ 1.37
SDF4-205ENST00000465727 NALCNQ8IZF0 1738 aa23.61■■□□□ 1.37
SDF4-205ENST00000465727 A2ML1A8K2U0 1454 aa23.6■■□□□ 1.37
SDF4-205ENST00000465727 IL25Q9H293 177 aa23.6■■□□□ 1.37
SDF4-205ENST00000465727 PYCARDQ9ULZ3 195 aa23.6■■□□□ 1.37
SDF4-205ENST00000465727 PLCB2Q00722 1185 aa23.6■■□□□ 1.37
SDF4-205ENST00000465727 FLIIQ13045 1269 aa23.6■■□□□ 1.37
SDF4-205ENST00000465727 RUFY3Q7L099 469 aa23.6■■□□□ 1.37
SDF4-205ENST00000465727 CRYBG1Q9Y4K1 1723 aa23.59■■□□□ 1.37
SDF4-205ENST00000465727 SIRT1Q96EB6 747 aa23.59■■□□□ 1.37
SDF4-205ENST00000465727 OVOS2A0A0J9YW53 1432 aa23.59■■□□□ 1.37
SDF4-205ENST00000465727 OVOS2Q6IE36 1432 aa23.59■■□□□ 1.37
SDF4-205ENST00000465727 CCDC30Q5VVM6 783 aa23.58■■□□□ 1.37
SDF4-205ENST00000465727 LSG1Q9H089 658 aaKnown RBP23.58■■□□□ 1.37
SDF4-205ENST00000465727 AP5Z1O43299 807 aa23.58■■□□□ 1.36
SDF4-205ENST00000465727 FAM200AQ8TCP9 573 aa23.58■■□□□ 1.36
SDF4-205ENST00000465727 ZSCAN31Q96LW9 406 aaPredicted RBP23.58■■□□□ 1.36
SDF4-205ENST00000465727 SH2B1Q9NRF2 756 aaPredicted RBP23.58■■□□□ 1.36
SDF4-205ENST00000465727 PEAK1Q9H792 1746 aa23.58■■□□□ 1.36
SDF4-205ENST00000465727 CNTROBQ8N137 903 aa23.57■■□□□ 1.36
SDF4-205ENST00000465727 SSH3Q8TE77 659 aa23.57■■□□□ 1.36
SDF4-205ENST00000465727 FBXO31Q5XUX0 539 aaPredicted RBP23.56■■□□□ 1.36
SDF4-205ENST00000465727 MTMR6Q9Y217 621 aa23.56■■□□□ 1.36
SDF4-205ENST00000465727 LRRFIP2Q9Y608 721 aaKnown RBP23.56■■□□□ 1.36
SDF4-205ENST00000465727 NRXN3Q9Y4C0 1643 aa23.56■■□□□ 1.36
SDF4-205ENST00000465727 TECPR2O15040 1411 aa23.56■■□□□ 1.36
SDF4-205ENST00000465727 LRRC37A3O60309 1634 aa23.56■■□□□ 1.36
SDF4-205ENST00000465727 PI4K2BQ8TCG2 481 aa23.55■■□□□ 1.36
SDF4-205ENST00000465727 PODXL2Q9NZ53 605 aa23.55■■□□□ 1.36
SDF4-205ENST00000465727 FAM177BA6PVY3 158 aa23.55■■□□□ 1.36
SDF4-205ENST00000465727 DNM1Q05193 864 aaKnown RBP23.55■■□□□ 1.36
SDF4-205ENST00000465727 VPS53Q5VIR6 699 aa23.55■■□□□ 1.36
SDF4-205ENST00000465727 MIS18AQ9NYP9 233 aa23.55■■□□□ 1.36
SDF4-205ENST00000465727 CCDC171Q6TFL3 1326 aa23.54■■□□□ 1.36
SDF4-205ENST00000465727 GJB2P29033 226 aa23.54■■□□□ 1.36
SDF4-205ENST00000465727 HYPKQ9NX55 129 aa23.54■■□□□ 1.36
SDF4-205ENST00000465727 FMN2Q9NZ56 1722 aa23.54■■□□□ 1.36
SDF4-205ENST00000465727 ELP1O95163 1332 aa23.54■■□□□ 1.36
SDF4-205ENST00000465727 CHD2O14647 1828 aaKnown RBP23.54■■□□□ 1.36
SDF4-205ENST00000465727 UBTFL1P0CB47 393 aaPredicted RBP23.53■■□□□ 1.36
SDF4-205ENST00000465727 HTATSF1O43719 755 aaKnown RBP23.53■■□□□ 1.36
SDF4-205ENST00000465727 MAP3K11Q16584 847 aa23.53■■□□□ 1.36
SDF4-205ENST00000465727 RASEFQ8IZ41 740 aa23.53■■□□□ 1.36
SDF4-205ENST00000465727 TM6SF1Q9BZW5 370 aa23.53■■□□□ 1.36
SDF4-205ENST00000465727 OGFRQ9NZT2 677 aa23.53■■□□□ 1.36
SDF4-205ENST00000465727 MAP3K5Q99683 1374 aa23.53■■□□□ 1.36
SDF4-205ENST00000465727 SMTNL1A8MU46 457 aa23.52■■□□□ 1.36
SDF4-205ENST00000465727 ARHGAP30Q7Z6I6 1101 aaPredicted RBP23.52■■□□□ 1.36
SDF4-205ENST00000465727 SPC24Q8NBT2 197 aa23.52■■□□□ 1.36
SDF4-205ENST00000465727 IL1RAPL2Q9NP60 686 aa23.52■■□□□ 1.36
SDF4-205ENST00000465727 KDRP35968 1356 aa23.52■■□□□ 1.36
SDF4-205ENST00000465727 USP31Q70CQ4 1352 aa23.52■■□□□ 1.36
SDF4-205ENST00000465727 KIF1BPQ96EK5 621 aa23.52■■□□□ 1.35
SDF4-205ENST00000465727 CASTP20810 708 aaKnown RBP23.51■■□□□ 1.35
SDF4-205ENST00000465727 POLA2Q14181 598 aa23.51■■□□□ 1.35
SDF4-205ENST00000465727 MTHFSDQ2M296 383 aaKnown RBP23.51■■□□□ 1.35
SDF4-205ENST00000465727 HSP90AB2PQ58FF8 381 aa23.51■■□□□ 1.35
SDF4-205ENST00000465727 TAF3Q5VWG9 929 aa23.51■■□□□ 1.35
SDF4-205ENST00000465727 NUTM1Q86Y26 1132 aa23.51■■□□□ 1.35
SDF4-205ENST00000465727 RUFY2Q8WXA3 655 aa23.51■■□□□ 1.35
SDF4-205ENST00000465727 USP44Q9H0E7 712 aa23.51■■□□□ 1.35
SDF4-205ENST00000465727 U2AF2P26368 475 aaKnown RBP eCLIP23.5■■□□□ 1.35
SDF4-205ENST00000465727 RHPN1Q8TCX5 695 aa23.5■■□□□ 1.35
SDF4-205ENST00000465727 NUP62CLQ9H1M0 184 aa23.5■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 193.5 ms