RNA–Protein interactions for RNA: ENST00000463727.1

PTPRE-205, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best)

Gene PTPRE, Length 3,944 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-205ENST00000463727 PRR36Q9H6K5 1346 aa12.49□□□□□ -0.41
PTPRE-205ENST00000463727 PDCP20941 246 aa12.49□□□□□ -0.41
PTPRE-205ENST00000463727 CCDC9Q9Y3X0 531 aaKnown RBP12.49□□□□□ -0.41
PTPRE-205ENST00000463727 COL3A1P02461 1466 aaPredicted RBP12.48□□□□□ -0.41
PTPRE-205ENST00000463727 ADGRB2O60241 1585 aa12.48□□□□□ -0.41
PTPRE-205ENST00000463727 CCDC83Q8IWF9 413 aa12.48□□□□□ -0.41
PTPRE-205ENST00000463727 ZSCAN31Q96LW9 406 aaPredicted RBP12.48□□□□□ -0.41
PTPRE-205ENST00000463727 SOS1Q07889 1333 aaPredicted RBP12.48□□□□□ -0.41
PTPRE-205ENST00000463727 ANXA1P04083 346 aa12.48□□□□□ -0.41
PTPRE-205ENST00000463727 HS1BP3Q53T59 392 aa12.48□□□□□ -0.41
PTPRE-205ENST00000463727 PRPF40BQ6NWY9 871 aaKnown RBP12.48□□□□□ -0.41
PTPRE-205ENST00000463727 CLTCQ00610 1675 aaKnown RBP12.47□□□□□ -0.41
PTPRE-205ENST00000463727 LARP1BQ659C4 914 aaKnown RBP12.47□□□□□ -0.41
PTPRE-205ENST00000463727 BICD2Q8TD16 824 aa12.47□□□□□ -0.41
PTPRE-205ENST00000463727 OSBPL3Q9H4L5 887 aa12.47□□□□□ -0.41
PTPRE-205ENST00000463727 TAOK2Q9UL54 1235 aa12.47□□□□□ -0.41
PTPRE-205ENST00000463727 SBNO1A3KN83 1393 aa12.47□□□□□ -0.41
PTPRE-205ENST00000463727 CCDC183Q5T5S1 534 aa12.47□□□□□ -0.41
PTPRE-205ENST00000463727 MAP7D2Q96T17 732 aa12.47□□□□□ -0.41
PTPRE-205ENST00000463727 SIL1Q9H173 461 aa12.47□□□□□ -0.41
PTPRE-205ENST00000463727 CPSF1Q10570 1443 aaKnown RBP12.47□□□□□ -0.41
PTPRE-205ENST00000463727 AGLP35573 1532 aa12.47□□□□□ -0.41
PTPRE-205ENST00000463727 STX6O43752 255 aa12.47□□□□□ -0.41
PTPRE-205ENST00000463727 PPP1R9BQ96SB3 815 aa12.47□□□□□ -0.41
PTPRE-205ENST00000463727 PHAXQ9H814 394 aaKnown RBP12.47□□□□□ -0.41
PTPRE-205ENST00000463727 DBF4Q9UBU7 674 aaPredicted RBP12.47□□□□□ -0.41
PTPRE-205ENST00000463727 KIF3AQ9Y496 699 aa12.47□□□□□ -0.41
PTPRE-205ENST00000463727 TMEM131LA2VDJ0 1609 aa12.47□□□□□ -0.41
PTPRE-205ENST00000463727 UQCRHLA0A096LP55 91 aa12.46□□□□□ -0.41
PTPRE-205ENST00000463727 UQCRHP07919 91 aa12.46□□□□□ -0.41
PTPRE-205ENST00000463727 MCM5P33992 734 aa12.46□□□□□ -0.41
PTPRE-205ENST00000463727 MPRIPQ6WCQ1 1025 aa12.46□□□□□ -0.41
PTPRE-205ENST00000463727 DDIT3P35638 169 aa12.46□□□□□ -0.41
PTPRE-205ENST00000463727 USP48Q86UV5 1035 aa12.46□□□□□ -0.41
PTPRE-205ENST00000463727 DDX54Q8TDD1 881 aaKnown RBP12.46□□□□□ -0.41
PTPRE-205ENST00000463727 RAPGEF4Q8WZA2 1011 aa12.46□□□□□ -0.41
PTPRE-205ENST00000463727 ECHDC1Q9NTX5 307 aa12.46□□□□□ -0.41
PTPRE-205ENST00000463727 REREQ9P2R6 1566 aa12.46□□□□□ -0.41
PTPRE-205ENST00000463727 A2ML1A8K2U0 1454 aa12.46□□□□□ -0.41
PTPRE-205ENST00000463727 KRT85P78386 507 aa12.46□□□□□ -0.42
PTPRE-205ENST00000463727 TTC5Q8N0Z6 440 aa12.46□□□□□ -0.42
PTPRE-205ENST00000463727 CHPF2Q9P2E5 772 aa12.46□□□□□ -0.42
PTPRE-205ENST00000463727 BLOC1S2Q6QNY1 142 aa12.45□□□□□ -0.42
PTPRE-205ENST00000463727 TMEM63CQ9P1W3 806 aa12.45□□□□□ -0.42
PTPRE-205ENST00000463727 PHF8Q9UPP1 1060 aa12.45□□□□□ -0.42
PTPRE-205ENST00000463727 ARHGEF10O15013 1369 aa12.45□□□□□ -0.42
PTPRE-205ENST00000463727 ARHGEF28Q8N1W1 1705 aaKnown RBP12.45□□□□□ -0.42
PTPRE-205ENST00000463727 OFD1O75665 1012 aa12.45□□□□□ -0.42
PTPRE-205ENST00000463727 UBE2Q2Q8WVN8 375 aa12.45□□□□□ -0.42
PTPRE-205ENST00000463727 USP25Q9UHP3 1055 aa12.45□□□□□ -0.42
PTPRE-205ENST00000463727 ZKSCAN5Q9Y2L8 839 aa12.45□□□□□ -0.42
PTPRE-205ENST00000463727 CD163L1Q9NR16 1453 aa12.45□□□□□ -0.42
PTPRE-205ENST00000463727 MAP3K5Q99683 1374 aa12.45□□□□□ -0.42
PTPRE-205ENST00000463727 TMEM2Q9UHN6 1383 aa12.45□□□□□ -0.42
PTPRE-205ENST00000463727 HOXC9P31274 260 aa12.45□□□□□ -0.42
PTPRE-205ENST00000463727 CHAMP1Q96JM3 812 aa12.45□□□□□ -0.42
PTPRE-205ENST00000463727 PALD1Q9ULE6 856 aa12.45□□□□□ -0.42
PTPRE-205ENST00000463727 IBTKQ9P2D0 1353 aaPredicted RBP12.45□□□□□ -0.42
PTPRE-205ENST00000463727 CCDC192P0DO97 292 aa12.44□□□□□ -0.42
PTPRE-205ENST00000463727 ZSCAN22P10073 491 aaPredicted RBP12.44□□□□□ -0.42
PTPRE-205ENST00000463727 SH2B1Q9NRF2 756 aaPredicted RBP12.44□□□□□ -0.42
PTPRE-205ENST00000463727 GOLGA6L19H0YKK7 550 aa12.44□□□□□ -0.42
PTPRE-205ENST00000463727 BRD1O95696 1058 aa12.44□□□□□ -0.42
PTPRE-205ENST00000463727 ANKRD1Q15327 319 aa12.44□□□□□ -0.42
PTPRE-205ENST00000463727 GORABQ5T7V8 394 aa12.44□□□□□ -0.42
PTPRE-205ENST00000463727 KCNH5Q8NCM2 988 aa12.44□□□□□ -0.42
PTPRE-205ENST00000463727 USP44Q9H0E7 712 aa12.44□□□□□ -0.42
PTPRE-205ENST00000463727 NCOA3Q9Y6Q9 1424 aa12.44□□□□□ -0.42
PTPRE-205ENST00000463727 SASS6Q6UVJ0 657 aa12.44□□□□□ -0.42
PTPRE-205ENST00000463727 MTERF4Q7Z6M4 381 aaKnown RBP12.44□□□□□ -0.42
PTPRE-205ENST00000463727 FERMT3Q86UX7 667 aa12.44□□□□□ -0.42
PTPRE-205ENST00000463727 GPT2Q8TD30 523 aa12.44□□□□□ -0.42
PTPRE-205ENST00000463727 NRDCO43847 1150 aa12.43□□□□□ -0.42
PTPRE-205ENST00000463727 UBE2HP62256 183 aa12.43□□□□□ -0.42
PTPRE-205ENST00000463727 CLEC17AQ6ZS10 378 aa12.43□□□□□ -0.42
PTPRE-205ENST00000463727 NLRP2Q9NX02 1062 aa12.43□□□□□ -0.42
PTPRE-205ENST00000463727 ROBO2Q9HCK4 1378 aa12.43□□□□□ -0.42
PTPRE-205ENST00000463727 HMGN5P82970 282 aaKnown RBP12.43□□□□□ -0.42
PTPRE-205ENST00000463727 STK3Q13188 491 aa12.43□□□□□ -0.42
PTPRE-205ENST00000463727 CNPY2Q9Y2B0 182 aa12.43□□□□□ -0.42
PTPRE-205ENST00000463727 MAP3K2Q9Y2U5 619 aa12.43□□□□□ -0.42
PTPRE-205ENST00000463727 LTKP29376 864 aa12.43□□□□□ -0.42
PTPRE-205ENST00000463727 NOL7Q9UMY1 257 aaKnown RBP12.43□□□□□ -0.42
PTPRE-205ENST00000463727 GJB2P29033 226 aa12.43□□□□□ -0.42
PTPRE-205ENST00000463727 AK2P54819 239 aa12.43□□□□□ -0.42
PTPRE-205ENST00000463727 AMOTQ4VCS5 1084 aa12.43□□□□□ -0.42
PTPRE-205ENST00000463727 SPC24Q8NBT2 197 aa12.43□□□□□ -0.42
PTPRE-205ENST00000463727 CCDC8Q9H0W5 538 aaPredicted RBP12.43□□□□□ -0.42
PTPRE-205ENST00000463727 BOLA2Q9H3K6 86 aa12.43□□□□□ -0.42
PTPRE-205ENST00000463727 BABAM1Q9NWV8 329 aa12.43□□□□□ -0.42
PTPRE-205ENST00000463727 BECN2A8MW95 431 aa12.42□□□□□ -0.42
PTPRE-205ENST00000463727 TPM3P06753 285 aa12.42□□□□□ -0.42
PTPRE-205ENST00000463727 HCLS1P14317 486 aaPredicted RBP12.42□□□□□ -0.42
PTPRE-205ENST00000463727 IL17REQ8NFR9 667 aa12.42□□□□□ -0.42
PTPRE-205ENST00000463727 EVI5LQ96CN4 794 aa12.42□□□□□ -0.42
PTPRE-205ENST00000463727 PDCL3Q9H2J4 239 aa12.42□□□□□ -0.42
PTPRE-205ENST00000463727 ZNF330Q9Y3S2 320 aaPredicted RBP12.42□□□□□ -0.42
PTPRE-205ENST00000463727 TBX22Q9Y458 520 aa12.42□□□□□ -0.42
PTPRE-205ENST00000463727 AOX1Q06278 1338 aa12.42□□□□□ -0.42
PTPRE-205ENST00000463727 MYL6BP14649 208 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms