RNA–Protein interactions for RNA: ENST00000462254.1

CSMD3-205, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-205ENST00000462254 CFAP74Q9C0B2 1584 aa6.9□□□□□ -1.31
CSMD3-205ENST00000462254 POTECB2RU33 542 aa6.89□□□□□ -1.31
CSMD3-205ENST00000462254 BRD1O95696 1058 aa6.89□□□□□ -1.31
CSMD3-205ENST00000462254 SKIP12755 728 aa6.89□□□□□ -1.31
CSMD3-205ENST00000462254 ERVK-9P63128 1117 aa6.89□□□□□ -1.31
CSMD3-205ENST00000462254 MEIOBQ8N635 442 aa6.89□□□□□ -1.31
CSMD3-205ENST00000462254 KDF1Q8NAX2 398 aaPredicted RBP6.89□□□□□ -1.31
CSMD3-205ENST00000462254 PLPP7Q8NBV4 271 aa6.89□□□□□ -1.31
CSMD3-205ENST00000462254 PUS7Q96PZ0 661 aaKnown RBP6.89□□□□□ -1.31
CSMD3-205ENST00000462254 ATP13A2Q9NQ11 1180 aa6.89□□□□□ -1.31
CSMD3-205ENST00000462254 DOLKQ9UPQ8 538 aa6.89□□□□□ -1.31
CSMD3-205ENST00000462254 GCC2Q8IWJ2 1684 aa6.89□□□□□ -1.31
CSMD3-205ENST00000462254 ARHGEF5Q12774 1597 aa6.88□□□□□ -1.31
CSMD3-205ENST00000462254 ABCC1P33527 1531 aa6.88□□□□□ -1.31
CSMD3-205ENST00000462254 SYCP2Q9BX26 1530 aa6.88□□□□□ -1.31
CSMD3-205ENST00000462254 PLCH2O75038 1416 aa6.88□□□□□ -1.31
CSMD3-205ENST00000462254 OXLD1Q5BKU9 147 aa6.88□□□□□ -1.31
CSMD3-205ENST00000462254 RICTORQ6R327 1708 aa6.87□□□□□ -1.31
CSMD3-205ENST00000462254 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.87□□□□□ -1.31
CSMD3-205ENST00000462254 CC2D2BQ6DHV5 1058 aa6.87□□□□□ -1.31
CSMD3-205ENST00000462254 MRPL14Q6P1L8 145 aaKnown RBP6.87□□□□□ -1.31
CSMD3-205ENST00000462254 CCDC125Q86Z20 511 aa6.87□□□□□ -1.31
CSMD3-205ENST00000462254 DEPDC4Q8N2C3 294 aa6.87□□□□□ -1.31
CSMD3-205ENST00000462254 PURBQ96QR8 312 aaKnown RBP6.87□□□□□ -1.31
CSMD3-205ENST00000462254 OSBPL3Q9H4L5 887 aa6.87□□□□□ -1.31
CSMD3-205ENST00000462254 TFIP11Q9UBB9 837 aaKnown RBP6.87□□□□□ -1.31
CSMD3-205ENST00000462254 CDK11BP21127 795 aaKnown RBP6.86□□□□□ -1.31
CSMD3-205ENST00000462254 RELBQ01201 579 aa6.86□□□□□ -1.31
CSMD3-205ENST00000462254 MAP7D1Q3KQU3 841 aa6.86□□□□□ -1.31
CSMD3-205ENST00000462254 C6orf118Q5T5N4 469 aa6.86□□□□□ -1.31
CSMD3-205ENST00000462254 LINC00528Q8N1L1 170 aa6.86□□□□□ -1.31
CSMD3-205ENST00000462254 NFATC2IPQ8NCF5 419 aa6.86□□□□□ -1.31
CSMD3-205ENST00000462254 ZFP42Q96MM3 310 aa6.86□□□□□ -1.31
CSMD3-205ENST00000462254 PCGF6Q9BYE7 350 aa6.86□□□□□ -1.31
CSMD3-205ENST00000462254 ZNF395Q9H8N7 513 aaPredicted RBP6.86□□□□□ -1.31
CSMD3-205ENST00000462254 GMPR2Q9P2T1 348 aaKnown RBP6.86□□□□□ -1.31
CSMD3-205ENST00000462254 USTQ9Y2C2 406 aa6.86□□□□□ -1.31
CSMD3-205ENST00000462254 ARHGEF12Q9NZN5 1544 aa6.86□□□□□ -1.31
CSMD3-205ENST00000462254 FANCAO15360 1455 aa6.85□□□□□ -1.31
CSMD3-205ENST00000462254 ZNF644Q9H582 1327 aaPredicted RBP6.85□□□□□ -1.31
CSMD3-205ENST00000462254 PALM3A6NDB9 673 aaPredicted RBP6.85□□□□□ -1.31
CSMD3-205ENST00000462254 USP17L5A8MUK1 530 aa6.85□□□□□ -1.31
CSMD3-205ENST00000462254 ATP9BO43861 1147 aa6.85□□□□□ -1.31
CSMD3-205ENST00000462254 STAU1O95793 577 aaKnown RBP6.85□□□□□ -1.31
CSMD3-205ENST00000462254 ADH1AP07327 375 aa6.85□□□□□ -1.31
CSMD3-205ENST00000462254 NCOA4Q13772 614 aa6.85□□□□□ -1.31
CSMD3-205ENST00000462254 FAM50AQ14320 339 aaKnown RBP6.85□□□□□ -1.31
CSMD3-205ENST00000462254 PPP1R12CQ9BZL4 782 aa6.85□□□□□ -1.31
CSMD3-205ENST00000462254 MAST1Q9Y2H9 1570 aa6.85□□□□□ -1.31
CSMD3-205ENST00000462254 DAPK1P53355 1430 aa6.84□□□□□ -1.31
CSMD3-205ENST00000462254 PTPRKQ15262 1439 aa6.84□□□□□ -1.31
CSMD3-205ENST00000462254 CD109Q6YHK3 1445 aa6.84□□□□□ -1.31
CSMD3-205ENST00000462254 FRMPD1Q5SYB0 1578 aa6.84□□□□□ -1.31
CSMD3-205ENST00000462254 INO80Q9ULG1 1556 aaPredicted RBP6.84□□□□□ -1.31
CSMD3-205ENST00000462254 BMP2P12643 396 aa6.84□□□□□ -1.31
CSMD3-205ENST00000462254 USP4Q13107 963 aa6.84□□□□□ -1.31
CSMD3-205ENST00000462254 TSEN34Q9BSV6 310 aaKnown RBP6.84□□□□□ -1.31
CSMD3-205ENST00000462254 CFDP1Q9UEE9 299 aaPredicted RBP6.84□□□□□ -1.31
CSMD3-205ENST00000462254 MAFBQ9Y5Q3 323 aaPredicted RBP6.84□□□□□ -1.31
CSMD3-205ENST00000462254 KIDINS220Q9ULH0 1771 aa6.84□□□□□ -1.31
CSMD3-205ENST00000462254 MBD5Q9P267 1494 aa6.84□□□□□ -1.31
CSMD3-205ENST00000462254 USP17L3A6NCW0 530 aa6.83□□□□□ -1.32
CSMD3-205ENST00000462254 USP17L4A6NCW7 530 aa6.83□□□□□ -1.32
CSMD3-205ENST00000462254 ATP5J2-PTCD1G3V325 749 aa6.83□□□□□ -1.32
CSMD3-205ENST00000462254 MYCP01106 439 aaPredicted RBP6.83□□□□□ -1.32
CSMD3-205ENST00000462254 PTGIRP43119 386 aa6.83□□□□□ -1.32
CSMD3-205ENST00000462254 CCDC27Q2M243 656 aa6.83□□□□□ -1.32
CSMD3-205ENST00000462254 CFAP70Q5T0N1 1121 aa6.83□□□□□ -1.32
CSMD3-205ENST00000462254 USP17L2Q6R6M4 530 aa6.83□□□□□ -1.32
CSMD3-205ENST00000462254 USP17L1Q7RTZ2 530 aa6.83□□□□□ -1.32
CSMD3-205ENST00000462254 CCDC141Q6ZP82 1450 aa6.83□□□□□ -1.32
CSMD3-205ENST00000462254 PLEKHH2Q8IVE3 1493 aa6.83□□□□□ -1.32
CSMD3-205ENST00000462254 SHANK2Q9UPX8 1470 aa6.83□□□□□ -1.32
CSMD3-205ENST00000462254 ABCC5O15440 1437 aa6.83□□□□□ -1.32
CSMD3-205ENST00000462254 KDM6BO15054 1643 aa6.83□□□□□ -1.32
CSMD3-205ENST00000462254 PLXNC1O60486 1568 aa6.82□□□□□ -1.32
CSMD3-205ENST00000462254 KDM5CP41229 1560 aa6.82□□□□□ -1.32
CSMD3-205ENST00000462254 ADGRL1O94910 1474 aa6.82□□□□□ -1.32
CSMD3-205ENST00000462254 NEO1Q92859 1461 aa6.82□□□□□ -1.32
CSMD3-205ENST00000462254 A0A1W2PRU2 124 aa6.82□□□□□ -1.32
CSMD3-205ENST00000462254 UPP2O95045 317 aa6.82□□□□□ -1.32
CSMD3-205ENST00000462254 SNRPBP14678 240 aaKnown RBP6.82□□□□□ -1.32
CSMD3-205ENST00000462254 SCARF1Q14162 830 aa6.82□□□□□ -1.32
CSMD3-205ENST00000462254 PLEKHM2Q8IWE5 1019 aa6.82□□□□□ -1.32
CSMD3-205ENST00000462254 PBXIP1Q96AQ6 731 aa6.82□□□□□ -1.32
CSMD3-205ENST00000462254 INSM2Q96T92 566 aaPredicted RBP6.82□□□□□ -1.32
CSMD3-205ENST00000462254 ESF1Q9H501 851 aaKnown RBP6.82□□□□□ -1.32
CSMD3-205ENST00000462254 RAB6BQ9NRW1 208 aa6.82□□□□□ -1.32
CSMD3-205ENST00000462254 AKNAQ7Z591 1439 aa6.82□□□□□ -1.32
CSMD3-205ENST00000462254 ZFYVE16Q7Z3T8 1539 aa6.81□□□□□ -1.32
CSMD3-205ENST00000462254 ADGRL2O95490 1459 aa6.81□□□□□ -1.32
CSMD3-205ENST00000462254 SPINT1O43278 529 aa6.81□□□□□ -1.32
CSMD3-205ENST00000462254 LMOD1P29536 600 aaPredicted RBP6.81□□□□□ -1.32
CSMD3-205ENST00000462254 ITGAEP38570 1179 aa6.81□□□□□ -1.32
CSMD3-205ENST00000462254 CTSOP43234 321 aaPredicted RBP6.81□□□□□ -1.32
CSMD3-205ENST00000462254 FAM69CQ0P6D2 419 aa6.81□□□□□ -1.32
CSMD3-205ENST00000462254 EML3Q32P44 896 aa6.81□□□□□ -1.32
CSMD3-205ENST00000462254 CYP2U1Q7Z449 544 aa6.81□□□□□ -1.32
CSMD3-205ENST00000462254 TRIM47Q96LD4 638 aa6.81□□□□□ -1.32
CSMD3-205ENST00000462254 ARHGEF10LQ9HCE6 1279 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms