RNA–Protein interactions for RNA: ENST00000458707.1

VPS50-208, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 1,898 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-208ENST00000458707 RIMS1Q86UR5 1692 aaKnown RBP10.36□□□□□ -0.75
VPS50-208ENST00000458707 SMARCA5O60264 1052 aaPredicted RBP10.36□□□□□ -0.75
VPS50-208ENST00000458707 HMMRO75330 724 aa10.36□□□□□ -0.75
VPS50-208ENST00000458707 HSPA2P54652 639 aa10.36□□□□□ -0.75
VPS50-208ENST00000458707 TEX2Q8IWB9 1127 aa10.36□□□□□ -0.75
VPS50-208ENST00000458707 MEIS3Q99687 375 aa10.36□□□□□ -0.75
VPS50-208ENST00000458707 RBM27Q9P2N5 1060 aaKnown RBP10.36□□□□□ -0.75
VPS50-208ENST00000458707 CRB1P82279 1406 aa10.36□□□□□ -0.75
VPS50-208ENST00000458707 SSH2Q76I76 1423 aa10.36□□□□□ -0.75
VPS50-208ENST00000458707 TTLL13PA6NNM8 815 aa10.35□□□□□ -0.75
VPS50-208ENST00000458707 BRD1O95696 1058 aa10.35□□□□□ -0.75
VPS50-208ENST00000458707 PDE1AP54750 535 aa10.35□□□□□ -0.75
VPS50-208ENST00000458707 CSPP1Q1MSJ5 1256 aa10.35□□□□□ -0.75
VPS50-208ENST00000458707 FBXO31Q5XUX0 539 aaPredicted RBP10.35□□□□□ -0.75
VPS50-208ENST00000458707 DHX37Q8IY37 1157 aaKnown RBP10.35□□□□□ -0.75
VPS50-208ENST00000458707 INTS4Q96HW7 963 aaKnown RBP10.35□□□□□ -0.75
VPS50-208ENST00000458707 MAP7D2Q96T17 732 aa10.35□□□□□ -0.75
VPS50-208ENST00000458707 ARHGEF10O15013 1369 aa10.35□□□□□ -0.75
VPS50-208ENST00000458707 ANAPC15P60006 121 aa10.34□□□□□ -0.75
VPS50-208ENST00000458707 RRS1Q15050 365 aaKnown RBP10.34□□□□□ -0.75
VPS50-208ENST00000458707 IER5LQ5T953 404 aa10.34□□□□□ -0.75
VPS50-208ENST00000458707 SIRT1Q96EB6 747 aa10.34□□□□□ -0.75
VPS50-208ENST00000458707 CCDC39Q9UFE4 941 aa10.34□□□□□ -0.75
VPS50-208ENST00000458707 CRYBG1Q9Y4K1 1723 aa10.34□□□□□ -0.75
VPS50-208ENST00000458707 OVOS2A0A0J9YW53 1432 aa10.34□□□□□ -0.75
VPS50-208ENST00000458707 OVOS2Q6IE36 1432 aa10.34□□□□□ -0.75
VPS50-208ENST00000458707 TMX3Q96JJ7 454 aa10.34□□□□□ -0.75
VPS50-208ENST00000458707 NSFL1CQ9UNZ2 370 aaKnown RBP10.34□□□□□ -0.75
VPS50-208ENST00000458707 SYCE3A1L190 88 aa10.33□□□□□ -0.76
VPS50-208ENST00000458707 CCT4P50991 539 aaKnown RBP10.33□□□□□ -0.76
VPS50-208ENST00000458707 EIF4A2Q14240 407 aaKnown RBP10.33□□□□□ -0.76
VPS50-208ENST00000458707 KRT24Q2M2I5 525 aa10.33□□□□□ -0.76
VPS50-208ENST00000458707 NUDT16Q96DE0 195 aaKnown RBP10.33□□□□□ -0.76
VPS50-208ENST00000458707 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.32□□□□□ -0.76
VPS50-208ENST00000458707 EPB41L2O43491 1005 aaKnown RBP10.32□□□□□ -0.76
VPS50-208ENST00000458707 NEK4P51957 841 aa10.32□□□□□ -0.76
VPS50-208ENST00000458707 AEBP1Q8IUX7 1158 aa10.32□□□□□ -0.76
VPS50-208ENST00000458707 ESYT1Q9BSJ8 1104 aa10.32□□□□□ -0.76
VPS50-208ENST00000458707 R3HCC1Q9Y3T6 440 aaKnown RBP10.32□□□□□ -0.76
VPS50-208ENST00000458707 CHD2O14647 1828 aaKnown RBP10.32□□□□□ -0.76
VPS50-208ENST00000458707 XPCQ01831 940 aaPredicted RBP10.32□□□□□ -0.76
VPS50-208ENST00000458707 SULT6B1Q6IMI4 303 aa10.32□□□□□ -0.76
VPS50-208ENST00000458707 FAM163AQ96GL9 167 aaPredicted RBP10.32□□□□□ -0.76
VPS50-208ENST00000458707 METP08581 1390 aa10.31□□□□□ -0.76
VPS50-208ENST00000458707 DYNC1I1O14576 645 aa10.31□□□□□ -0.76
VPS50-208ENST00000458707 MCCP23508 829 aa10.31□□□□□ -0.76
VPS50-208ENST00000458707 SYAP1Q96A49 352 aaPredicted RBP10.31□□□□□ -0.76
VPS50-208ENST00000458707 PXDNLA1KZ92 1463 aa10.3□□□□□ -0.76
VPS50-208ENST00000458707 APBB1O00213 710 aa10.3□□□□□ -0.76
VPS50-208ENST00000458707 MCM10Q7L590 875 aa10.3□□□□□ -0.76
VPS50-208ENST00000458707 MTERF4Q7Z6M4 381 aaKnown RBP10.3□□□□□ -0.76
VPS50-208ENST00000458707 CHAMP1Q96JM3 812 aa10.3□□□□□ -0.76
VPS50-208ENST00000458707 TSPY26PQ9H489 355 aa10.3□□□□□ -0.76
VPS50-208ENST00000458707 STAP2Q9UGK3 403 aa10.3□□□□□ -0.76
VPS50-208ENST00000458707 AOX1Q06278 1338 aa10.3□□□□□ -0.76
VPS50-208ENST00000458707 USP31Q70CQ4 1352 aa10.3□□□□□ -0.76
VPS50-208ENST00000458707 UQCRHLA0A096LP55 91 aa10.3□□□□□ -0.76
VPS50-208ENST00000458707 GNAI2P04899 355 aa10.3□□□□□ -0.76
VPS50-208ENST00000458707 UQCRHP07919 91 aa10.3□□□□□ -0.76
VPS50-208ENST00000458707 CHMLP26374 656 aa10.3□□□□□ -0.76
VPS50-208ENST00000458707 PLCD3Q8N3E9 789 aa10.3□□□□□ -0.76
VPS50-208ENST00000458707 TMEM87AQ8NBN3 555 aa10.3□□□□□ -0.76
VPS50-208ENST00000458707 COLQQ9Y215 455 aaPredicted RBP10.3□□□□□ -0.76
VPS50-208ENST00000458707 TTC21BQ7Z4L5 1316 aa10.29□□□□□ -0.76
VPS50-208ENST00000458707 PHF14O94880 888 aa10.29□□□□□ -0.76
VPS50-208ENST00000458707 MX1P20591 662 aa10.29□□□□□ -0.76
VPS50-208ENST00000458707 NUBP1P53384 320 aa10.29□□□□□ -0.76
VPS50-208ENST00000458707 UVSSAQ2YD98 709 aa10.29□□□□□ -0.76
VPS50-208ENST00000458707 SASS6Q6UVJ0 657 aa10.29□□□□□ -0.76
VPS50-208ENST00000458707 UBR1Q8IWV7 1749 aa10.29□□□□□ -0.76
VPS50-208ENST00000458707 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.29□□□□□ -0.76
VPS50-208ENST00000458707 LRRCC1Q9C099 1032 aa10.29□□□□□ -0.76
VPS50-208ENST00000458707 SRCIN1Q9C0H9 1055 aa10.29□□□□□ -0.76
VPS50-208ENST00000458707 PALD1Q9ULE6 856 aa10.29□□□□□ -0.76
VPS50-208ENST00000458707 PRR36Q9H6K5 1346 aa10.29□□□□□ -0.76
VPS50-208ENST00000458707 RGPD8O14715 1765 aaPredicted RBP10.28□□□□□ -0.76
VPS50-208ENST00000458707 G2E3Q7L622 706 aa10.28□□□□□ -0.76
VPS50-208ENST00000458707 FAM184AQ8NB25 1140 aa10.28□□□□□ -0.76
VPS50-208ENST00000458707 USP54Q70EL1 1684 aa10.28□□□□□ -0.76
VPS50-208ENST00000458707 NCKAP5LQ9HCH0 1330 aa10.28□□□□□ -0.76
VPS50-208ENST00000458707 KDRP35968 1356 aa10.28□□□□□ -0.76
VPS50-208ENST00000458707 HSP90B1P14625 803 aaKnown RBP10.27□□□□□ -0.76
VPS50-208ENST00000458707 ATP8B2P98198 1209 aa10.27□□□□□ -0.76
VPS50-208ENST00000458707 PCDHB13Q9Y5F0 798 aa10.27□□□□□ -0.76
VPS50-208ENST00000458707 MARF1Q9Y4F3 1742 aaKnown RBP10.27□□□□□ -0.76
VPS50-208ENST00000458707 RPAP1Q9BWH6 1393 aaPredicted RBP10.27□□□□□ -0.77
VPS50-208ENST00000458707 USP6P35125 1406 aa10.27□□□□□ -0.77
VPS50-208ENST00000458707 GNAI3P08754 354 aa10.27□□□□□ -0.77
VPS50-208ENST00000458707 SMAP1Q8IYB5 467 aaPredicted RBP10.27□□□□□ -0.77
VPS50-208ENST00000458707 ZFP91Q96JP5 570 aaPredicted RBP10.27□□□□□ -0.77
VPS50-208ENST00000458707 EXOC6BQ9Y2D4 811 aa10.27□□□□□ -0.77
VPS50-208ENST00000458707 WDR33Q9C0J8 1336 aaKnown RBP10.27□□□□□ -0.77
VPS50-208ENST00000458707 F6X3S4 739 aa10.26□□□□□ -0.77
VPS50-208ENST00000458707 HSPA4P34932 840 aa10.26□□□□□ -0.77
VPS50-208ENST00000458707 KIAA2012Q0VF49 1180 aa10.26□□□□□ -0.77
VPS50-208ENST00000458707 TXNDC2Q86VQ3 553 aa10.26□□□□□ -0.77
VPS50-208ENST00000458707 RNF214Q8ND24 703 aa10.26□□□□□ -0.77
VPS50-208ENST00000458707 FBXO3Q9UK99 471 aa10.26□□□□□ -0.77
VPS50-208ENST00000458707 SOS1Q07889 1333 aaPredicted RBP10.26□□□□□ -0.77
VPS50-208ENST00000458707 FOXD4L5Q5VV16 416 aaPredicted RBP10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms