RNA–Protein interactions for RNA: ENST00000457986.5

ATP13A3-205, Transcript of ATPase 13A3, human

TSL 3

Gene ATP13A3, Length 490 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATP13A3-205	ENST00000457986	USPL1	Q5W0Q7	1092 aa		32.94	■■■□□ 2.86
ATP13A3-205	ENST00000457986	HEG1	Q9ULI3	1381 aa		32.94	■■■□□ 2.86
ATP13A3-205	ENST00000457986	BRCA1	P38398	1863 aa	Known RBP	32.93	■■■□□ 2.86
ATP13A3-205	ENST00000457986		A0A0G2JLW4	131 aa		32.93	■■■□□ 2.86
ATP13A3-205	ENST00000457986	DDR1	Q08345	913 aa		32.93	■■■□□ 2.86
ATP13A3-205	ENST00000457986	FCHSD2	O94868	740 aa		32.92	■■■□□ 2.86
ATP13A3-205	ENST00000457986	ZNF496	Q96IT1	587 aa	Predicted RBP	32.92	■■■□□ 2.86
ATP13A3-205	ENST00000457986	NARF	Q9UHQ1	456 aa		32.92	■■■□□ 2.86
ATP13A3-205	ENST00000457986	ADCY9	O60503	1353 aa		32.92	■■■□□ 2.86
ATP13A3-205	ENST00000457986	BCS1L	Q9Y276	419 aa		32.91	■■■□□ 2.86
ATP13A3-205	ENST00000457986	DPEP1	P16444	411 aa		32.9	■■■□□ 2.86
ATP13A3-205	ENST00000457986	RTF1	Q92541	710 aa	Known RBP	32.9	■■■□□ 2.86
ATP13A3-205	ENST00000457986	FMNL2	Q96PY5	1086 aa		32.9	■■■□□ 2.86
ATP13A3-205	ENST00000457986	TEX13A	Q9BXU3	409 aa	Predicted RBP	32.9	■■■□□ 2.86
ATP13A3-205	ENST00000457986	POLRMT	O00411	1230 aa	Known RBP	32.89	■■■□□ 2.86
ATP13A3-205	ENST00000457986	CANX	P27824	592 aa	Known RBP	32.89	■■■□□ 2.86
ATP13A3-205	ENST00000457986	C1QTNF8	P60827	252 aa		32.88	■■■□□ 2.85
ATP13A3-205	ENST00000457986	BTBD11	A6QL63	1104 aa		32.87	■■■□□ 2.85
ATP13A3-205	ENST00000457986	TM4SF1	P30408	202 aa		32.87	■■■□□ 2.85
ATP13A3-205	ENST00000457986		A0A087WZG4	1122 aa		32.85	■■■□□ 2.85
ATP13A3-205	ENST00000457986	AFDN	P55196	1824 aa	Known RBP	32.85	■■■□□ 2.85
ATP13A3-205	ENST00000457986	ARFGEF1	Q9Y6D6	1849 aa		32.85	■■■□□ 2.85
ATP13A3-205	ENST00000457986	NEFM	P07197	916 aa		32.84	■■■□□ 2.85
ATP13A3-205	ENST00000457986	SCN7A	Q01118	1682 aa		32.84	■■■□□ 2.85
ATP13A3-205	ENST00000457986	NRXN2	Q9P2S2	1712 aa		32.83	■■■□□ 2.85
ATP13A3-205	ENST00000457986	EIF5	P55010	431 aa	Known RBP	32.83	■■■□□ 2.85
ATP13A3-205	ENST00000457986	NFIX	Q14938	502 aa		32.82	■■■□□ 2.84
ATP13A3-205	ENST00000457986	GPBP1L1	Q9HC44	474 aa	Predicted RBP	32.82	■■■□□ 2.84
ATP13A3-205	ENST00000457986	PIM2	Q9P1W9	311 aa		32.82	■■■□□ 2.84
ATP13A3-205	ENST00000457986	MCM10	Q7L590	875 aa		32.81	■■■□□ 2.84
ATP13A3-205	ENST00000457986	HTATSF1	O43719	755 aa	Known RBP	32.8	■■■□□ 2.84
ATP13A3-205	ENST00000457986	NPM2	Q86SE8	214 aa	Known RBP	32.8	■■■□□ 2.84
ATP13A3-205	ENST00000457986	BCL2L12	Q9HB09	334 aa		32.8	■■■□□ 2.84
ATP13A3-205	ENST00000457986	ZNF330	Q9Y3S2	320 aa	Predicted RBP	32.8	■■■□□ 2.84
ATP13A3-205	ENST00000457986	KCNA3	P22001	575 aa		32.79	■■■□□ 2.84
ATP13A3-205	ENST00000457986	IL6ST	P40189	918 aa	Predicted RBP	32.78	■■■□□ 2.84
ATP13A3-205	ENST00000457986	KCNQ3	O43525	872 aa		32.77	■■■□□ 2.84
ATP13A3-205	ENST00000457986	DALRD3	Q5D0E6	543 aa	Known RBP	32.77	■■■□□ 2.84
ATP13A3-205	ENST00000457986	ARHGAP27	Q6ZUM4	889 aa		32.77	■■■□□ 2.84
ATP13A3-205	ENST00000457986	ZNF526	Q8TF50	670 aa	Predicted RBP	32.77	■■■□□ 2.84
ATP13A3-205	ENST00000457986	SENP3-EIF4A1	A0A087X0R7	540 aa		32.76	■■■□□ 2.83
ATP13A3-205	ENST00000457986	SERPINB2	P05120	415 aa		32.76	■■■□□ 2.83
ATP13A3-205	ENST00000457986	CHRNA5	P30532	468 aa		32.75	■■■□□ 2.83
ATP13A3-205	ENST00000457986	DLG5	Q8TDM6	1919 aa		32.75	■■■□□ 2.83
ATP13A3-205	ENST00000457986	DCTN1	Q14203	1278 aa		32.74	■■■□□ 2.83
ATP13A3-205	ENST00000457986	A1BG	P04217	495 aa		32.73	■■■□□ 2.83
ATP13A3-205	ENST00000457986	BCOR	Q6W2J9	1755 aa		32.73	■■■□□ 2.83
ATP13A3-205	ENST00000457986	DLEC1	Q9Y238	1755 aa		32.73	■■■□□ 2.83
ATP13A3-205	ENST00000457986	BICDL1	Q6ZP65	573 aa		32.72	■■■□□ 2.83
ATP13A3-205	ENST00000457986	SNRPA1	P09661	255 aa	Known RBP	32.71	■■■□□ 2.83
ATP13A3-205	ENST00000457986	PNN	Q9H307	717 aa	Known RBP	32.71	■■■□□ 2.83
ATP13A3-205	ENST00000457986	TBC1D2B	Q9UPU7	963 aa		32.71	■■■□□ 2.83
ATP13A3-205	ENST00000457986	TBC1D9B	Q66K14	1250 aa		32.69	■■■□□ 2.82
ATP13A3-205	ENST00000457986	USP16	Q9Y5T5	823 aa		32.69	■■■□□ 2.82
ATP13A3-205	ENST00000457986	MAPK8IP3	Q9UPT6	1336 aa		32.69	■■■□□ 2.82
ATP13A3-205	ENST00000457986	CARMIL3	Q8ND23	1372 aa		32.69	■■■□□ 2.82
ATP13A3-205	ENST00000457986	RALBP1	Q15311	655 aa		32.68	■■■□□ 2.82
ATP13A3-205	ENST00000457986	TAF7	Q15545	349 aa	Predicted RBP	32.68	■■■□□ 2.82
ATP13A3-205	ENST00000457986	LAMB4	A4D0S4	1761 aa		32.68	■■■□□ 2.82
ATP13A3-205	ENST00000457986	DZIP3	Q86Y13	1208 aa	Known RBP	32.66	■■■□□ 2.82
ATP13A3-205	ENST00000457986	PLEKHF1	Q96S99	279 aa		32.66	■■■□□ 2.82
ATP13A3-205	ENST00000457986	KDM3B	Q7LBC6	1761 aa		32.65	■■■□□ 2.82
ATP13A3-205	ENST00000457986	PRAMEF22	A3QJZ6	481 aa		32.65	■■■□□ 2.82
ATP13A3-205	ENST00000457986	NFE2L2	Q16236	605 aa		32.65	■■■□□ 2.82
ATP13A3-205	ENST00000457986	CAMTA2	O94983	1202 aa		32.64	■■■□□ 2.82
ATP13A3-205	ENST00000457986	PNISR	Q8TF01	805 aa	Known RBP	32.64	■■■□□ 2.82
ATP13A3-205	ENST00000457986	C2CD5	Q86YS7	1000 aa		32.63	■■■□□ 2.81
ATP13A3-205	ENST00000457986	ANKRD31	Q8N7Z5	1873 aa		32.63	■■■□□ 2.81
ATP13A3-205	ENST00000457986	PIP4K2A	P48426	406 aa	Predicted RBP	32.62	■■■□□ 2.81
ATP13A3-205	ENST00000457986	C9orf131	Q5VYM1	1079 aa		32.62	■■■□□ 2.81
ATP13A3-205	ENST00000457986		H0YIN7	160 aa		32.61	■■■□□ 2.81
ATP13A3-205	ENST00000457986	NPHP1	O15259	732 aa		32.61	■■■□□ 2.81
ATP13A3-205	ENST00000457986	SETDB2	Q96T68	719 aa		32.61	■■■□□ 2.81
ATP13A3-205	ENST00000457986	DDX10	Q13206	875 aa	Known RBP	32.6	■■■□□ 2.81
ATP13A3-205	ENST00000457986	PDZRN3	Q9UPQ7	1066 aa		32.6	■■■□□ 2.81
ATP13A3-205	ENST00000457986	ZNF652	Q9Y2D9	606 aa		32.6	■■■□□ 2.81
ATP13A3-205	ENST00000457986	PRR5L	Q6MZQ0	368 aa		32.59	■■■□□ 2.81
ATP13A3-205	ENST00000457986	TTLL6	Q8N841	843 aa		32.59	■■■□□ 2.81
ATP13A3-205	ENST00000457986	PDE6B	P35913	854 aa		32.58	■■■□□ 2.81
ATP13A3-205	ENST00000457986	CNBD1	Q8NA66	436 aa		32.58	■■■□□ 2.81
ATP13A3-205	ENST00000457986	MIS18A	Q9NYP9	233 aa		32.58	■■■□□ 2.81
ATP13A3-205	ENST00000457986	RNF181	Q9P0P0	153 aa		32.58	■■■□□ 2.81
ATP13A3-205	ENST00000457986	SBF1	O95248	1867 aa		32.57	■■■□□ 2.8
ATP13A3-205	ENST00000457986	BRIP1	Q9BX63	1249 aa		32.57	■■■□□ 2.8
ATP13A3-205	ENST00000457986	COL11A2	P13942	1736 aa	Predicted RBP	32.57	■■■□□ 2.8
ATP13A3-205	ENST00000457986	MYBBP1A	Q9BQG0	1328 aa	Known RBP	32.56	■■■□□ 2.8
ATP13A3-205	ENST00000457986	KIF3C	O14782	793 aa		32.56	■■■□□ 2.8
ATP13A3-205	ENST00000457986	ST5	P78524	1137 aa		32.56	■■■□□ 2.8
ATP13A3-205	ENST00000457986	CLEC4G	Q6UXB4	293 aa		32.56	■■■□□ 2.8
ATP13A3-205	ENST00000457986	NBPF26	B4DH59	902 aa		32.53	■■■□□ 2.8
ATP13A3-205	ENST00000457986	NBPF10	Q6P3W6	841 aa	Known RBP	32.53	■■■□□ 2.8
ATP13A3-205	ENST00000457986	NBPF15	Q8N660	670 aa		32.53	■■■□□ 2.8
ATP13A3-205	ENST00000457986	THUMPD2	Q9BTF0	503 aa	Known RBP	32.53	■■■□□ 2.8
ATP13A3-205	ENST00000457986	RGL2	O15211	777 aa		32.52	■■■□□ 2.8
ATP13A3-205	ENST00000457986	RASSF7	Q02833	373 aa		32.52	■■■□□ 2.8
ATP13A3-205	ENST00000457986	CCDC24	Q8N4L8	307 aa		32.52	■■■□□ 2.8
ATP13A3-205	ENST00000457986	ZNF622	Q969S3	477 aa	Known RBP eCLIP	32.52	■■■□□ 2.8	7e-6	■■■■□ 22.7
ATP13A3-205	ENST00000457986	EIF4A1	P60842	406 aa	Known RBP	32.49	■■■□□ 2.79
ATP13A3-205	ENST00000457986	NBPF5P	Q86XG9	351 aa	Predicted RBP	32.49	■■■□□ 2.79
ATP13A3-205	ENST00000457986	LMOD3	Q0VAK6	560 aa		32.48	■■■□□ 2.79

Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms