RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 NOL7Q9UMY1 257 aaKnown RBP14.21□□□□□ -0.13
MSH6-204ENST00000445503 FAM184AQ8NB25 1140 aa14.21□□□□□ -0.14
MSH6-204ENST00000445503 ZNF592Q92610 1267 aa14.21□□□□□ -0.14
MSH6-204ENST00000445503 PDCL3Q9H2J4 239 aa14.21□□□□□ -0.14
MSH6-204ENST00000445503 LMTK2Q8IWU2 1503 aa14.21□□□□□ -0.14
MSH6-204ENST00000445503 ABCA9Q8IUA7 1624 aa14.2□□□□□ -0.14
MSH6-204ENST00000445503 GJB2P29033 226 aa14.2□□□□□ -0.14
MSH6-204ENST00000445503 TFIP11Q9UBB9 837 aaKnown RBP14.2□□□□□ -0.14
MSH6-204ENST00000445503 CAMSAP1Q5T5Y3 1602 aa14.2□□□□□ -0.14
MSH6-204ENST00000445503 MROH1Q8NDA8 1641 aa14.2□□□□□ -0.14
MSH6-204ENST00000445503 RAB11FIP3O75154 756 aa14.2□□□□□ -0.14
MSH6-204ENST00000445503 BRD1O95696 1058 aa14.2□□□□□ -0.14
MSH6-204ENST00000445503 HECW2Q9P2P5 1572 aa14.2□□□□□ -0.14
MSH6-204ENST00000445503 MYL6BP14649 208 aa14.2□□□□□ -0.14
MSH6-204ENST00000445503 HDAC5Q9UQL6 1122 aa14.2□□□□□ -0.14
MSH6-204ENST00000445503 PTPRMP28827 1452 aa14.2□□□□□ -0.14
MSH6-204ENST00000445503 FAM177BA6PVY3 158 aa14.19□□□□□ -0.14
MSH6-204ENST00000445503 GLRX3O76003 335 aaKnown RBP14.19□□□□□ -0.14
MSH6-204ENST00000445503 ESCO1Q5FWF5 840 aa14.19□□□□□ -0.14
MSH6-204ENST00000445503 NBPF7P0C2Y1 421 aaPredicted RBP14.19□□□□□ -0.14
MSH6-204ENST00000445503 ZSCAN22P10073 491 aaPredicted RBP14.19□□□□□ -0.14
MSH6-204ENST00000445503 ANAPC15P60006 121 aa14.19□□□□□ -0.14
MSH6-204ENST00000445503 DNM1Q05193 864 aaKnown RBP14.19□□□□□ -0.14
MSH6-204ENST00000445503 JARID2Q92833 1246 aaPredicted RBP14.19□□□□□ -0.14
MSH6-204ENST00000445503 USP44Q9H0E7 712 aa14.19□□□□□ -0.14
MSH6-204ENST00000445503 CKAP2LQ8IYA6 745 aa14.19□□□□□ -0.14
MSH6-204ENST00000445503 PRDM10Q9NQV6 1147 aa14.19□□□□□ -0.14
MSH6-204ENST00000445503 RNF20Q5VTR2 975 aa14.19□□□□□ -0.14
MSH6-204ENST00000445503 DNAJC2Q99543 621 aaKnown RBP14.19□□□□□ -0.14
MSH6-204ENST00000445503 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.19□□□□□ -0.14
MSH6-204ENST00000445503 NCOA3Q9Y6Q9 1424 aa14.18□□□□□ -0.14
MSH6-204ENST00000445503 MED14O60244 1454 aa14.18□□□□□ -0.14
MSH6-204ENST00000445503 NEXMIFQ5QGS0 1516 aa14.18□□□□□ -0.14
MSH6-204ENST00000445503 NEXNQ0ZGT2 675 aa14.18□□□□□ -0.14
MSH6-204ENST00000445503 COL3A1P02461 1466 aaPredicted RBP14.18□□□□□ -0.14
MSH6-204ENST00000445503 PPFIA3O75145 1194 aa14.18□□□□□ -0.14
MSH6-204ENST00000445503 SYT1P21579 422 aa14.18□□□□□ -0.14
MSH6-204ENST00000445503 TRIM5Q9C035 493 aa14.18□□□□□ -0.14
MSH6-204ENST00000445503 KIF24Q5T7B8 1368 aa14.18□□□□□ -0.14
MSH6-204ENST00000445503 KIAA0232Q92628 1395 aa14.18□□□□□ -0.14
MSH6-204ENST00000445503 SOS1Q07889 1333 aaPredicted RBP14.17□□□□□ -0.14
MSH6-204ENST00000445503 SASS6Q6UVJ0 657 aa14.17□□□□□ -0.14
MSH6-204ENST00000445503 DDX11Q96FC9 970 aa14.17□□□□□ -0.14
MSH6-204ENST00000445503 AATKQ6ZMQ8 1374 aa14.17□□□□□ -0.14
MSH6-204ENST00000445503 LETM1O95202 739 aaPredicted RBP14.17□□□□□ -0.14
MSH6-204ENST00000445503 FAM173BQ6P4H8 233 aa14.17□□□□□ -0.14
MSH6-204ENST00000445503 INTS4Q96HW7 963 aaKnown RBP14.17□□□□□ -0.14
MSH6-204ENST00000445503 BLOC1S2Q6QNY1 142 aa14.17□□□□□ -0.14
MSH6-204ENST00000445503 IL17REQ8NFR9 667 aa14.17□□□□□ -0.14
MSH6-204ENST00000445503 TSC1Q92574 1164 aa14.17□□□□□ -0.14
MSH6-204ENST00000445503 MAP3K2Q9Y2U5 619 aa14.17□□□□□ -0.14
MSH6-204ENST00000445503 DDX58O95786 925 aaKnown RBP14.16□□□□□ -0.14
MSH6-204ENST00000445503 CCDC192P0DO97 292 aa14.16□□□□□ -0.14
MSH6-204ENST00000445503 KRT85P78386 507 aa14.16□□□□□ -0.14
MSH6-204ENST00000445503 SNX14Q9Y5W7 946 aa14.16□□□□□ -0.14
MSH6-204ENST00000445503 AK9Q5TCS8 1911 aa14.16□□□□□ -0.14
MSH6-204ENST00000445503 CD163L1Q9NR16 1453 aa14.16□□□□□ -0.14
MSH6-204ENST00000445503 FLT4P35916 1363 aa14.16□□□□□ -0.14
MSH6-204ENST00000445503 A0A0G2JS52 829 aa14.16□□□□□ -0.14
MSH6-204ENST00000445503 GOLGA6L19H0YKK7 550 aa14.16□□□□□ -0.14
MSH6-204ENST00000445503 PLEKHO1Q53GL0 409 aaPredicted RBP14.16□□□□□ -0.14
MSH6-204ENST00000445503 NEUROD6Q96NK8 337 aa14.16□□□□□ -0.14
MSH6-204ENST00000445503 LGR6Q9HBX8 967 aa14.16□□□□□ -0.14
MSH6-204ENST00000445503 ECHDC1Q9NTX5 307 aa14.16□□□□□ -0.14
MSH6-204ENST00000445503 ATP7BP35670 1465 aa14.16□□□□□ -0.14
MSH6-204ENST00000445503 PSMA5P28066 241 aa14.15□□□□□ -0.14
MSH6-204ENST00000445503 UBE2HP62256 183 aa14.15□□□□□ -0.14
MSH6-204ENST00000445503 CWF19L2Q2TBE0 894 aaKnown RBP14.15□□□□□ -0.14
MSH6-204ENST00000445503 ARHGEF40Q8TER5 1519 aa14.15□□□□□ -0.14
MSH6-204ENST00000445503 LRRC59Q96AG4 307 aaKnown RBP14.15□□□□□ -0.14
MSH6-204ENST00000445503 MAP7D2Q96T17 732 aa14.15□□□□□ -0.14
MSH6-204ENST00000445503 TNMDQ9H2S6 317 aa14.15□□□□□ -0.14
MSH6-204ENST00000445503 BECN2A8MW95 431 aa14.15□□□□□ -0.14
MSH6-204ENST00000445503 HS1BP3Q53T59 392 aa14.15□□□□□ -0.14
MSH6-204ENST00000445503 RASEFQ8IZ41 740 aa14.15□□□□□ -0.14
MSH6-204ENST00000445503 KCNQ3O43525 872 aa14.15□□□□□ -0.14
MSH6-204ENST00000445503 F13A1P00488 732 aa14.15□□□□□ -0.14
MSH6-204ENST00000445503 ZC3H13Q5T200 1668 aaKnown RBP14.14□□□□□ -0.15
MSH6-204ENST00000445503 CYP2E1P05181 493 aaPredicted RBP14.14□□□□□ -0.15
MSH6-204ENST00000445503 NUP62CLQ9H1M0 184 aa14.14□□□□□ -0.15
MSH6-204ENST00000445503 OSBPL3Q9H4L5 887 aa14.14□□□□□ -0.15
MSH6-204ENST00000445503 TNRQ92752 1358 aa14.14□□□□□ -0.15
MSH6-204ENST00000445503 ALKQ9UM73 1620 aa14.14□□□□□ -0.15
MSH6-204ENST00000445503 HTATSF1O43719 755 aaKnown RBP14.14□□□□□ -0.15
MSH6-204ENST00000445503 LTKP29376 864 aa14.14□□□□□ -0.15
MSH6-204ENST00000445503 SPATA32Q96LK8 384 aa14.14□□□□□ -0.15
MSH6-204ENST00000445503 NEO1Q92859 1461 aa14.14□□□□□ -0.15
MSH6-204ENST00000445503 ADGRB2O60241 1585 aa14.14□□□□□ -0.15
MSH6-204ENST00000445503 SGSM2O43147 1006 aa14.14□□□□□ -0.15
MSH6-204ENST00000445503 HOXC9P31274 260 aa14.14□□□□□ -0.15
MSH6-204ENST00000445503 NLRP2Q9NX02 1062 aa14.14□□□□□ -0.15
MSH6-204ENST00000445503 PPP6R1Q9UPN7 881 aa14.14□□□□□ -0.15
MSH6-204ENST00000445503 CDK12Q9NYV4 1490 aaPredicted RBP14.14□□□□□ -0.15
MSH6-204ENST00000445503 PPLO60437 1756 aa14.13□□□□□ -0.15
MSH6-204ENST00000445503 ROBO2Q9HCK4 1378 aa14.13□□□□□ -0.15
MSH6-204ENST00000445503 MCM5P33992 734 aa14.13□□□□□ -0.15
MSH6-204ENST00000445503 HSPA4P34932 840 aa14.13□□□□□ -0.15
MSH6-204ENST00000445503 NOLC1Q14978 699 aaKnown RBP eCLIP14.13□□□□□ -0.15
MSH6-204ENST00000445503 ERC1Q8IUD2 1116 aa14.13□□□□□ -0.15
MSH6-204ENST00000445503 ZSCAN31Q96LW9 406 aaPredicted RBP14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms