RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 SLC39A6Q13433 755 aa7.48□□□□□ -1.21
VPS50-205ENST00000441602 C9orf78Q9NZ63 289 aaPredicted RBP7.48□□□□□ -1.21
VPS50-205ENST00000441602 PI4KAP2A4QPH2 592 aa7.48□□□□□ -1.21
VPS50-205ENST00000441602 PI4KAP1Q8N8J0 262 aa7.48□□□□□ -1.21
VPS50-205ENST00000441602 LINS1Q8NG48 757 aa7.48□□□□□ -1.21
VPS50-205ENST00000441602 ZNF496Q96IT1 587 aaPredicted RBP7.48□□□□□ -1.21
VPS50-205ENST00000441602 PHAXQ9H814 394 aaKnown RBP7.48□□□□□ -1.21
VPS50-205ENST00000441602 USP35Q9P2H5 1018 aa7.48□□□□□ -1.21
VPS50-205ENST00000441602 ATP8B2P98198 1209 aa7.47□□□□□ -1.21
VPS50-205ENST00000441602 CCDC9Q9Y3X0 531 aaKnown RBP7.47□□□□□ -1.21
VPS50-205ENST00000441602 NUTM2BA6NNL0 878 aaPredicted RBP7.47□□□□□ -1.21
VPS50-205ENST00000441602 NUTM2EB1AL46 878 aaPredicted RBP7.47□□□□□ -1.21
VPS50-205ENST00000441602 ADAMTS2O95450 1211 aa7.47□□□□□ -1.21
VPS50-205ENST00000441602 CASC1Q6TDU7 716 aa7.47□□□□□ -1.21
VPS50-205ENST00000441602 NUTM2AQ8IVF1 878 aaPredicted RBP7.47□□□□□ -1.21
VPS50-205ENST00000441602 MAP3K2Q9Y2U5 619 aa7.47□□□□□ -1.21
VPS50-205ENST00000441602 RAB11FIP3O75154 756 aa7.47□□□□□ -1.21
VPS50-205ENST00000441602 JCADQ9P266 1359 aa7.46□□□□□ -1.21
VPS50-205ENST00000441602 IPO9Q96P70 1041 aaKnown RBP7.46□□□□□ -1.21
VPS50-205ENST00000441602 SIPA1L3O60292 1781 aaPredicted RBP7.46□□□□□ -1.22
VPS50-205ENST00000441602 AIMP1Q12904 312 aaKnown RBP7.46□□□□□ -1.22
VPS50-205ENST00000441602 C8orf34Q49A92 452 aa7.46□□□□□ -1.22
VPS50-205ENST00000441602 BEND3Q5T5X7 828 aa7.46□□□□□ -1.22
VPS50-205ENST00000441602 SKAP1Q86WV1 359 aa7.46□□□□□ -1.22
VPS50-205ENST00000441602 LRRFIP2Q9Y608 721 aaKnown RBP7.46□□□□□ -1.22
VPS50-205ENST00000441602 IBTKQ9P2D0 1353 aaPredicted RBP7.46□□□□□ -1.22
VPS50-205ENST00000441602 BMP2KLQ5H9B9 411 aa7.46□□□□□ -1.22
VPS50-205ENST00000441602 XAGE3Q8WTP9 111 aa7.46□□□□□ -1.22
VPS50-205ENST00000441602 STARD3NLO95772 234 aa7.45□□□□□ -1.22
VPS50-205ENST00000441602 OS9Q13438 667 aaPredicted RBP7.45□□□□□ -1.22
VPS50-205ENST00000441602 ERC1Q8IUD2 1116 aa7.45□□□□□ -1.22
VPS50-205ENST00000441602 VSIG10Q8N0Z9 540 aa7.45□□□□□ -1.22
VPS50-205ENST00000441602 COL16A1Q07092 1604 aaPredicted RBP7.45□□□□□ -1.22
VPS50-205ENST00000441602 ANXA1P04083 346 aa7.45□□□□□ -1.22
VPS50-205ENST00000441602 MYL6BP14649 208 aa7.45□□□□□ -1.22
VPS50-205ENST00000441602 BECN1Q14457 450 aa7.45□□□□□ -1.22
VPS50-205ENST00000441602 DDB1Q16531 1140 aa7.45□□□□□ -1.22
VPS50-205ENST00000441602 SIRT2Q8IXJ6 389 aa7.45□□□□□ -1.22
VPS50-205ENST00000441602 LRRCC1Q9C099 1032 aa7.45□□□□□ -1.22
VPS50-205ENST00000441602 USP44Q9H0E7 712 aa7.45□□□□□ -1.22
VPS50-205ENST00000441602 ANKRD13DQ6ZTN6 518 aa7.44□□□□□ -1.22
VPS50-205ENST00000441602 METTL22Q9BUU2 404 aaPredicted RBP7.44□□□□□ -1.22
VPS50-205ENST00000441602 DISP2A7MBM2 1401 aa7.44□□□□□ -1.22
VPS50-205ENST00000441602 TNS2Q63HR2 1409 aa7.44□□□□□ -1.22
VPS50-205ENST00000441602 CDC45O75419 566 aa7.44□□□□□ -1.22
VPS50-205ENST00000441602 COPS6Q7L5N1 327 aa7.44□□□□□ -1.22
VPS50-205ENST00000441602 PLBD2Q8NHP8 589 aa7.44□□□□□ -1.22
VPS50-205ENST00000441602 ADCY9O60503 1353 aa7.44□□□□□ -1.22
VPS50-205ENST00000441602 SPATA31A6Q5VVP1 1343 aa7.44□□□□□ -1.22
VPS50-205ENST00000441602 VIRMAQ69YN4 1812 aaKnown RBP7.44□□□□□ -1.22
VPS50-205ENST00000441602 N4BP2Q86UW6 1770 aaPredicted RBP7.44□□□□□ -1.22
VPS50-205ENST00000441602 GRM8O00222 908 aa7.44□□□□□ -1.22
VPS50-205ENST00000441602 NOP58Q9Y2X3 529 aaKnown RBP7.44□□□□□ -1.22
VPS50-205ENST00000441602 KIF6Q6ZMV9 814 aa7.43□□□□□ -1.22
VPS50-205ENST00000441602 GPATCH3Q96I76 525 aa7.43□□□□□ -1.22
VPS50-205ENST00000441602 NGLY1Q96IV0 654 aa7.43□□□□□ -1.22
VPS50-205ENST00000441602 MYD88Q99836 296 aa7.43□□□□□ -1.22
VPS50-205ENST00000441602 SPATA31A1Q5TZJ5 1347 aa7.43□□□□□ -1.22
VPS50-205ENST00000441602 APBB1O00213 710 aa7.43□□□□□ -1.22
VPS50-205ENST00000441602 SRGAP3O43295 1099 aa7.43□□□□□ -1.22
VPS50-205ENST00000441602 PTCD1O75127 700 aaKnown RBP7.43□□□□□ -1.22
VPS50-205ENST00000441602 SURF6O75683 361 aaKnown RBP7.43□□□□□ -1.22
VPS50-205ENST00000441602 PROSER3Q2NL68 480 aa7.43□□□□□ -1.22
VPS50-205ENST00000441602 BARGINQ6ZT62 677 aa7.43□□□□□ -1.22
VPS50-205ENST00000441602 SSH3Q8TE77 659 aa7.43□□□□□ -1.22
VPS50-205ENST00000441602 SMARCC1Q92922 1105 aaPredicted RBP7.43□□□□□ -1.22
VPS50-205ENST00000441602 KIF1BPQ96EK5 621 aa7.43□□□□□ -1.22
VPS50-205ENST00000441602 USP16Q9Y5T5 823 aa7.43□□□□□ -1.22
VPS50-205ENST00000441602 PLCH1Q4KWH8 1693 aa7.43□□□□□ -1.22
VPS50-205ENST00000441602 LRP6O75581 1613 aa7.43□□□□□ -1.22
VPS50-205ENST00000441602 MEX3CQ5U5Q3 659 aaKnown RBP7.43□□□□□ -1.22
VPS50-205ENST00000441602 PPP1R42Q7Z4L9 355 aa7.43□□□□□ -1.22
VPS50-205ENST00000441602 RBM42Q9BTD8 480 aaKnown RBP7.43□□□□□ -1.22
VPS50-205ENST00000441602 AOX1Q06278 1338 aa7.42□□□□□ -1.22
VPS50-205ENST00000441602 A0A0G2JS52 829 aa7.42□□□□□ -1.22
VPS50-205ENST00000441602 UNC5CLQ8IV45 518 aa7.42□□□□□ -1.22
VPS50-205ENST00000441602 CERKQ8TCT0 537 aa7.42□□□□□ -1.22
VPS50-205ENST00000441602 SPATA31A5Q5VU36 1347 aa7.42□□□□□ -1.22
VPS50-205ENST00000441602 SPATA31A7Q8IWB4 1347 aa7.42□□□□□ -1.22
VPS50-205ENST00000441602 PRAMEF22A3QJZ6 481 aa7.42□□□□□ -1.22
VPS50-205ENST00000441602 G3BP1Q13283 466 aaKnown RBP eCLIP7.42□□□□□ -1.22
VPS50-205ENST00000441602 MTX1Q13505 466 aa7.42□□□□□ -1.22
VPS50-205ENST00000441602 PDIA6Q15084 440 aa7.42□□□□□ -1.22
VPS50-205ENST00000441602 HSP90AB3PQ58FF7 597 aa7.42□□□□□ -1.22
VPS50-205ENST00000441602 SYTL4Q96C24 671 aaPredicted RBP7.42□□□□□ -1.22
VPS50-205ENST00000441602 LAMB4A4D0S4 1761 aa7.42□□□□□ -1.22
VPS50-205ENST00000441602 POLA2Q14181 598 aa7.42□□□□□ -1.22
VPS50-205ENST00000441602 TTC22Q5TAA0 569 aa7.42□□□□□ -1.22
VPS50-205ENST00000441602 NWD2Q9ULI1 1742 aa7.41□□□□□ -1.22
VPS50-205ENST00000441602 PLEKHM2Q8IWE5 1019 aa7.41□□□□□ -1.22
VPS50-205ENST00000441602 BCL11AQ9H165 835 aa7.41□□□□□ -1.22
VPS50-205ENST00000441602 EXOC6BQ9Y2D4 811 aa7.41□□□□□ -1.22
VPS50-205ENST00000441602 UTYO14607 1347 aa7.41□□□□□ -1.22
VPS50-205ENST00000441602 NEURL1BA8MQ27 555 aa7.41□□□□□ -1.22
VPS50-205ENST00000441602 MFAP1P55081 439 aaKnown RBP7.41□□□□□ -1.22
VPS50-205ENST00000441602 MYT1Q01538 1121 aa7.41□□□□□ -1.22
VPS50-205ENST00000441602 GCKRQ14397 625 aa7.41□□□□□ -1.22
VPS50-205ENST00000441602 VPS72Q15906 364 aa7.41□□□□□ -1.22
VPS50-205ENST00000441602 CLASRPQ8N2M8 674 aaKnown RBP7.41□□□□□ -1.22
VPS50-205ENST00000441602 PIGBQ92521 554 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms