RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 LRMPQ12912 555 aa10.78□□□□□ -0.68
COPB1-202ENST00000439561 CUL4AQ13619 759 aa10.78□□□□□ -0.68
COPB1-202ENST00000439561 TRMT1Q9NXH9 659 aaKnown RBP10.78□□□□□ -0.68
COPB1-202ENST00000439561 CCDC61Q9Y6R9 512 aa10.78□□□□□ -0.68
COPB1-202ENST00000439561 LRRC7Q96NW7 1537 aa10.78□□□□□ -0.68
COPB1-202ENST00000439561 TULP4Q9NRJ4 1543 aa10.78□□□□□ -0.68
COPB1-202ENST00000439561 ZFYVE9O95405 1425 aa10.78□□□□□ -0.68
COPB1-202ENST00000439561 DMTNQ08495 405 aa10.78□□□□□ -0.68
COPB1-202ENST00000439561 PPP1R42Q7Z4L9 355 aa10.78□□□□□ -0.68
COPB1-202ENST00000439561 CHL1O00533 1208 aa10.77□□□□□ -0.68
COPB1-202ENST00000439561 NGDNQ8NEJ9 315 aaKnown RBP10.77□□□□□ -0.68
COPB1-202ENST00000439561 SPATA32Q96LK8 384 aa10.77□□□□□ -0.68
COPB1-202ENST00000439561 WASLO00401 505 aaPredicted RBP10.77□□□□□ -0.69
COPB1-202ENST00000439561 PPFIA3O75145 1194 aa10.77□□□□□ -0.69
COPB1-202ENST00000439561 ANO6Q4KMQ2 910 aa10.77□□□□□ -0.69
COPB1-202ENST00000439561 ZNF710Q8N1W2 664 aa10.77□□□□□ -0.69
COPB1-202ENST00000439561 CLASRPQ8N2M8 674 aaKnown RBP10.77□□□□□ -0.69
COPB1-202ENST00000439561 GPATCH3Q96I76 525 aa10.77□□□□□ -0.69
COPB1-202ENST00000439561 MED14O60244 1454 aa10.77□□□□□ -0.69
COPB1-202ENST00000439561 ANXA1P04083 346 aa10.77□□□□□ -0.69
COPB1-202ENST00000439561 DACT1Q9NYF0 836 aa10.77□□□□□ -0.69
COPB1-202ENST00000439561 C9orf78Q9NZ63 289 aaPredicted RBP10.77□□□□□ -0.69
COPB1-202ENST00000439561 SNX14Q9Y5W7 946 aa10.77□□□□□ -0.69
COPB1-202ENST00000439561 RAB11FIP3O75154 756 aa10.76□□□□□ -0.69
COPB1-202ENST00000439561 ATP8B2P98198 1209 aa10.76□□□□□ -0.69
COPB1-202ENST00000439561 RASEFQ8IZ41 740 aa10.76□□□□□ -0.69
COPB1-202ENST00000439561 DDX11Q96FC9 970 aa10.76□□□□□ -0.69
COPB1-202ENST00000439561 GORABQ5T7V8 394 aa10.76□□□□□ -0.69
COPB1-202ENST00000439561 CLIP2Q9UDT6 1046 aa10.76□□□□□ -0.69
COPB1-202ENST00000439561 PIK3R4Q99570 1358 aa10.76□□□□□ -0.69
COPB1-202ENST00000439561 TYRO3Q06418 890 aa10.76□□□□□ -0.69
COPB1-202ENST00000439561 RHPN1Q8TCX5 695 aa10.76□□□□□ -0.69
COPB1-202ENST00000439561 TRERF1Q96PN7 1200 aa10.76□□□□□ -0.69
COPB1-202ENST00000439561 FMNL2Q96PY5 1086 aa10.76□□□□□ -0.69
COPB1-202ENST00000439561 MTHFSDQ2M296 383 aaKnown RBP10.75□□□□□ -0.69
COPB1-202ENST00000439561 FAM200AQ8TCP9 573 aa10.75□□□□□ -0.69
COPB1-202ENST00000439561 DNAJC25Q9H1X3 360 aa10.75□□□□□ -0.69
COPB1-202ENST00000439561 IL25Q9H293 177 aa10.75□□□□□ -0.69
COPB1-202ENST00000439561 HSPA4P34932 840 aa10.75□□□□□ -0.69
COPB1-202ENST00000439561 ZNF165P49910 485 aa10.75□□□□□ -0.69
COPB1-202ENST00000439561 NAA30Q147X3 362 aaPredicted RBP10.75□□□□□ -0.69
COPB1-202ENST00000439561 RUFY3Q7L099 469 aa10.75□□□□□ -0.69
COPB1-202ENST00000439561 NRBP1Q9UHY1 535 aa10.75□□□□□ -0.69
COPB1-202ENST00000439561 EFCAB6Q5THR3 1501 aa10.75□□□□□ -0.69
COPB1-202ENST00000439561 LARGE1O95461 756 aa10.74□□□□□ -0.69
COPB1-202ENST00000439561 ZSCAN20P17040 1043 aaPredicted RBP10.74□□□□□ -0.69
COPB1-202ENST00000439561 KIAA1524Q8TCG1 905 aa10.74□□□□□ -0.69
COPB1-202ENST00000439561 FSD1Q9BTV5 496 aa10.74□□□□□ -0.69
COPB1-202ENST00000439561 GTPBP4Q9BZE4 634 aaKnown RBP10.74□□□□□ -0.69
COPB1-202ENST00000439561 SIL1Q9H173 461 aa10.74□□□□□ -0.69
COPB1-202ENST00000439561 KIF1BPQ96EK5 621 aa10.74□□□□□ -0.69
COPB1-202ENST00000439561 LIG1P18858 919 aa10.74□□□□□ -0.69
COPB1-202ENST00000439561 ATP10DQ9P241 1426 aa10.74□□□□□ -0.69
COPB1-202ENST00000439561 ADGRB2O60241 1585 aa10.73□□□□□ -0.69
COPB1-202ENST00000439561 PNPLA6Q8IY17 1366 aa10.73□□□□□ -0.69
COPB1-202ENST00000439561 HTATSF1O43719 755 aaKnown RBP10.73□□□□□ -0.69
COPB1-202ENST00000439561 TAF7Q15545 349 aaPredicted RBP10.73□□□□□ -0.69
COPB1-202ENST00000439561 AACSQ86V21 672 aa10.73□□□□□ -0.69
COPB1-202ENST00000439561 OSBPL3Q9H4L5 887 aa10.73□□□□□ -0.69
COPB1-202ENST00000439561 PHAXQ9H814 394 aaKnown RBP10.73□□□□□ -0.69
COPB1-202ENST00000439561 RGS12O14924 1447 aa10.73□□□□□ -0.69
COPB1-202ENST00000439561 GLI2P10070 1586 aa10.73□□□□□ -0.69
COPB1-202ENST00000439561 BLOC1S2Q6QNY1 142 aa10.73□□□□□ -0.69
COPB1-202ENST00000439561 SGSM2O43147 1006 aa10.73□□□□□ -0.69
COPB1-202ENST00000439561 PDCP20941 246 aa10.73□□□□□ -0.69
COPB1-202ENST00000439561 AIMP1Q12904 312 aaKnown RBP10.73□□□□□ -0.69
COPB1-202ENST00000439561 HOMER1Q86YM7 354 aa10.73□□□□□ -0.69
COPB1-202ENST00000439561 USHBP1Q8N6Y0 703 aa10.73□□□□□ -0.69
COPB1-202ENST00000439561 KIAA1210Q9ULL0 1709 aa10.72□□□□□ -0.69
COPB1-202ENST00000439561 ADCK5Q3MIX3 580 aa10.72□□□□□ -0.69
COPB1-202ENST00000439561 BBXQ8WY36 941 aaPredicted RBP10.72□□□□□ -0.69
COPB1-202ENST00000439561 ZSCAN31Q96LW9 406 aaPredicted RBP10.72□□□□□ -0.69
COPB1-202ENST00000439561 RAD50Q92878 1312 aa10.72□□□□□ -0.69
COPB1-202ENST00000439561 KIF24Q5T7B8 1368 aa10.72□□□□□ -0.69
COPB1-202ENST00000439561 POGZQ7Z3K3 1410 aa10.72□□□□□ -0.69
COPB1-202ENST00000439561 ZCCHC11Q5TAX3 1644 aaKnown RBP10.72□□□□□ -0.69
COPB1-202ENST00000439561 NRDCO43847 1150 aa10.72□□□□□ -0.69
COPB1-202ENST00000439561 PTPN14Q15678 1187 aa10.72□□□□□ -0.69
COPB1-202ENST00000439561 CEP135Q66GS9 1140 aa10.72□□□□□ -0.69
COPB1-202ENST00000439561 LMOD2Q6P5Q4 547 aa10.72□□□□□ -0.69
COPB1-202ENST00000439561 CDC37L1Q7L3B6 337 aa10.72□□□□□ -0.69
COPB1-202ENST00000439561 CCDC8Q9H0W5 538 aaPredicted RBP10.72□□□□□ -0.69
COPB1-202ENST00000439561 KCNF1Q9H3M0 494 aa10.72□□□□□ -0.69
COPB1-202ENST00000439561 CBX8Q9HC52 389 aa10.72□□□□□ -0.69
COPB1-202ENST00000439561 MTMR6Q9Y217 621 aa10.72□□□□□ -0.69
COPB1-202ENST00000439561 ASXL2Q76L83 1435 aa10.72□□□□□ -0.69
COPB1-202ENST00000439561 GLRX3O76003 335 aaKnown RBP10.71□□□□□ -0.69
COPB1-202ENST00000439561 RNF20Q5VTR2 975 aa10.71□□□□□ -0.69
COPB1-202ENST00000439561 SYTL4Q96C24 671 aaPredicted RBP10.71□□□□□ -0.69
COPB1-202ENST00000439561 BOLA2Q9H3K6 86 aa10.71□□□□□ -0.69
COPB1-202ENST00000439561 SOS1Q07889 1333 aaPredicted RBP10.71□□□□□ -0.69
COPB1-202ENST00000439561 MROH2AA6NES4 1674 aa10.71□□□□□ -0.69
COPB1-202ENST00000439561 COL3A1P02461 1466 aaPredicted RBP10.71□□□□□ -0.69
COPB1-202ENST00000439561 SF3A1Q15459 793 aaKnown RBP10.71□□□□□ -0.69
COPB1-202ENST00000439561 HSP90AB4PQ58FF6 505 aa10.71□□□□□ -0.69
COPB1-202ENST00000439561 CCDC73Q6ZRK6 1079 aa10.71□□□□□ -0.69
COPB1-202ENST00000439561 TTC6Q86TZ1 520 aa10.71□□□□□ -0.69
COPB1-202ENST00000439561 PA2G4Q9UQ80 394 aaKnown RBP10.71□□□□□ -0.69
COPB1-202ENST00000439561 ADGRB1O14514 1584 aa10.71□□□□□ -0.69
COPB1-202ENST00000439561 PSMA5P28066 241 aa10.71□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms