RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 MTX1Q13505 466 aa16.62■□□□□ 0.25
COL6A3-207ENST00000433762 ZGPATQ8N5A5 531 aaKnown RBP16.62■□□□□ 0.25
COL6A3-207ENST00000433762 ARXQ96QS3 562 aa16.62■□□□□ 0.25
COL6A3-207ENST00000433762 PLEKHG5O94827 1062 aa16.6■□□□□ 0.25
COL6A3-207ENST00000433762 HSPA4P34932 840 aa16.6■□□□□ 0.25
COL6A3-207ENST00000433762 ZSCAN23Q3MJ62 389 aa16.6■□□□□ 0.25
COL6A3-207ENST00000433762 AMOTQ4VCS5 1084 aa16.6■□□□□ 0.25
COL6A3-207ENST00000433762 TTC41PQ6P2S7 1318 aa16.6■□□□□ 0.25
COL6A3-207ENST00000433762 AKAP4Q5JQC9 854 aa16.59■□□□□ 0.25
COL6A3-207ENST00000433762 RGPD2P0DJD1 1756 aa16.59■□□□□ 0.25
COL6A3-207ENST00000433762 TRIM6-TRIM34B2RNG4 842 aa16.59■□□□□ 0.25
COL6A3-207ENST00000433762 RHPN1Q8TCX5 695 aa16.59■□□□□ 0.25
COL6A3-207ENST00000433762 DNAAF4Q8WXU2 420 aa16.59■□□□□ 0.25
COL6A3-207ENST00000433762 ANO2Q9NQ90 1003 aa16.59■□□□□ 0.25
COL6A3-207ENST00000433762 NPHP4O75161 1426 aaPredicted RBP16.59■□□□□ 0.25
COL6A3-207ENST00000433762 PKP1Q13835 747 aa16.58■□□□□ 0.25
COL6A3-207ENST00000433762 BEND3Q5T5X7 828 aa16.58■□□□□ 0.25
COL6A3-207ENST00000433762 RAD50Q92878 1312 aa16.58■□□□□ 0.25
COL6A3-207ENST00000433762 HEG1Q9ULI3 1381 aa16.58■□□□□ 0.25
COL6A3-207ENST00000433762 ALDH1L1O75891 902 aa16.58■□□□□ 0.24
COL6A3-207ENST00000433762 PPP1R42Q7Z4L9 355 aa16.58■□□□□ 0.24
COL6A3-207ENST00000433762 PI4K2BQ8TCG2 481 aa16.58■□□□□ 0.24
COL6A3-207ENST00000433762 RILPL2Q969X0 211 aa16.58■□□□□ 0.24
COL6A3-207ENST00000433762 PLEKHO1Q53GL0 409 aaPredicted RBP16.57■□□□□ 0.24
COL6A3-207ENST00000433762 CAVIN1Q6NZI2 390 aaKnown RBP16.57■□□□□ 0.24
COL6A3-207ENST00000433762 CNTROBQ8N137 903 aa16.57■□□□□ 0.24
COL6A3-207ENST00000433762 PLEKHG2Q9H7P9 1386 aa16.57■□□□□ 0.24
COL6A3-207ENST00000433762 MST1RQ04912 1400 aa16.57■□□□□ 0.24
COL6A3-207ENST00000433762 HSPA2P54652 639 aa16.57■□□□□ 0.24
COL6A3-207ENST00000433762 PDLIM2Q96JY6 352 aa16.57■□□□□ 0.24
COL6A3-207ENST00000433762 ABCC6O95255 1503 aa16.56■□□□□ 0.24
COL6A3-207ENST00000433762 SGSM2O43147 1006 aa16.56■□□□□ 0.24
COL6A3-207ENST00000433762 PRPF40AO75400 957 aaKnown RBP16.56■□□□□ 0.24
COL6A3-207ENST00000433762 SURF6O75683 361 aaKnown RBP16.56■□□□□ 0.24
COL6A3-207ENST00000433762 LRSAM1Q6UWE0 723 aa16.56■□□□□ 0.24
COL6A3-207ENST00000433762 GPT2Q8TD30 523 aa16.56■□□□□ 0.24
COL6A3-207ENST00000433762 PHAXQ9H814 394 aaKnown RBP16.56■□□□□ 0.24
COL6A3-207ENST00000433762 PALD1Q9ULE6 856 aa16.56■□□□□ 0.24
COL6A3-207ENST00000433762 KIF1AQ12756 1690 aa16.55■□□□□ 0.24
COL6A3-207ENST00000433762 WDR33Q9C0J8 1336 aaKnown RBP16.55■□□□□ 0.24
COL6A3-207ENST00000433762 ZSCAN30Q86W11 494 aa16.55■□□□□ 0.24
COL6A3-207ENST00000433762 ERC1Q8IUD2 1116 aa16.55■□□□□ 0.24
COL6A3-207ENST00000433762 SYAP1Q96A49 352 aaPredicted RBP16.55■□□□□ 0.24
COL6A3-207ENST00000433762 DBF4Q9UBU7 674 aaPredicted RBP16.55■□□□□ 0.24
COL6A3-207ENST00000433762 ADCY9O60503 1353 aa16.55■□□□□ 0.24
COL6A3-207ENST00000433762 TRPM3Q9HCF6 1732 aaPredicted RBP16.55■□□□□ 0.24
COL6A3-207ENST00000433762 NBPF6Q5VWK0 638 aa16.55■□□□□ 0.24
COL6A3-207ENST00000433762 NBPF4Q96M43 638 aa16.55■□□□□ 0.24
COL6A3-207ENST00000433762 GLRX3O76003 335 aaKnown RBP16.54■□□□□ 0.24
COL6A3-207ENST00000433762 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.54■□□□□ 0.24
COL6A3-207ENST00000433762 ERBB4Q15303 1308 aa16.54■□□□□ 0.24
COL6A3-207ENST00000433762 SRGAP3O43295 1099 aa16.53■□□□□ 0.24
COL6A3-207ENST00000433762 TEFQ10587 303 aa16.53■□□□□ 0.24
COL6A3-207ENST00000433762 TSHZ3Q63HK5 1081 aa16.53■□□□□ 0.24
COL6A3-207ENST00000433762 UNC5CLQ8IV45 518 aa16.53■□□□□ 0.24
COL6A3-207ENST00000433762 TMEM87AQ8NBN3 555 aa16.53■□□□□ 0.24
COL6A3-207ENST00000433762 RUFY2Q8WXA3 655 aa16.53■□□□□ 0.24
COL6A3-207ENST00000433762 NECTIN2Q92692 538 aa16.53■□□□□ 0.24
COL6A3-207ENST00000433762 PDIA4P13667 645 aaKnown RBP16.52■□□□□ 0.24
COL6A3-207ENST00000433762 NUTM2GQ5VZR2 741 aa16.52■□□□□ 0.24
COL6A3-207ENST00000433762 LTV1Q96GA3 475 aaPredicted RBP16.52■□□□□ 0.24
COL6A3-207ENST00000433762 CHPF2Q9P2E5 772 aa16.52■□□□□ 0.24
COL6A3-207ENST00000433762 UTYO14607 1347 aa16.52■□□□□ 0.24
COL6A3-207ENST00000433762 KCNB2Q92953 911 aa16.52■□□□□ 0.23
COL6A3-207ENST00000433762 LSG1Q9H089 658 aaKnown RBP16.52■□□□□ 0.23
COL6A3-207ENST00000433762 PI4KAP2A4QPH2 592 aa16.51■□□□□ 0.23
COL6A3-207ENST00000433762 PHF14O94880 888 aa16.51■□□□□ 0.23
COL6A3-207ENST00000433762 ZNF530Q6P9A1 599 aaPredicted RBP16.51■□□□□ 0.23
COL6A3-207ENST00000433762 PI4KAP1Q8N8J0 262 aa16.51■□□□□ 0.23
COL6A3-207ENST00000433762 GPATCH3Q96I76 525 aa16.51■□□□□ 0.23
COL6A3-207ENST00000433762 TTC14Q96N46 770 aa16.51■□□□□ 0.23
COL6A3-207ENST00000433762 IL1RAPL2Q9NP60 686 aa16.51■□□□□ 0.23
COL6A3-207ENST00000433762 BTBD11A6QL63 1104 aa16.51■□□□□ 0.23
COL6A3-207ENST00000433762 RNMTO43148 476 aaKnown RBP16.51■□□□□ 0.23
COL6A3-207ENST00000433762 NCLP19338 710 aaKnown RBP16.51■□□□□ 0.23
COL6A3-207ENST00000433762 MCM5P33992 734 aa16.51■□□□□ 0.23
COL6A3-207ENST00000433762 TM6SF1Q9BZW5 370 aa16.51■□□□□ 0.23
COL6A3-207ENST00000433762 NBPF7P0C2Y1 421 aaPredicted RBP16.5■□□□□ 0.23
COL6A3-207ENST00000433762 ARHGEF25Q86VW2 580 aa16.5■□□□□ 0.23
COL6A3-207ENST00000433762 LGR6Q9HBX8 967 aa16.5■□□□□ 0.23
COL6A3-207ENST00000433762 TMEM63CQ9P1W3 806 aa16.5■□□□□ 0.23
COL6A3-207ENST00000433762 TERF1P54274 439 aa16.5■□□□□ 0.23
COL6A3-207ENST00000433762 KSR2Q6VAB6 950 aa16.5■□□□□ 0.23
COL6A3-207ENST00000433762 KIAA1211Q6ZU35 1233 aa16.5■□□□□ 0.23
COL6A3-207ENST00000433762 NUTM1Q86Y26 1132 aa16.5■□□□□ 0.23
COL6A3-207ENST00000433762 USHBP1Q8N6Y0 703 aa16.5■□□□□ 0.23
COL6A3-207ENST00000433762 HYPKQ9NX55 129 aa16.5■□□□□ 0.23
COL6A3-207ENST00000433762 SCN11AQ9UI33 1791 aa16.5■□□□□ 0.23
COL6A3-207ENST00000433762 PRIM1P49642 420 aaKnown RBP16.49■□□□□ 0.23
COL6A3-207ENST00000433762 PSME1Q06323 249 aa16.49■□□□□ 0.23
COL6A3-207ENST00000433762 C1orf141Q5JVX7 400 aa16.49■□□□□ 0.23
COL6A3-207ENST00000433762 CLASRPQ8N2M8 674 aaKnown RBP16.49■□□□□ 0.23
COL6A3-207ENST00000433762 RBSNQ9H1K0 784 aa16.49■□□□□ 0.23
COL6A3-207ENST00000433762 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.49■□□□□ 0.23
COL6A3-207ENST00000433762 SNX14Q9Y5W7 946 aa16.49■□□□□ 0.23
COL6A3-207ENST00000433762 MRC1P22897 1456 aa16.49■□□□□ 0.23
COL6A3-207ENST00000433762 HIP1O00291 1037 aa16.49■□□□□ 0.23
COL6A3-207ENST00000433762 PXDNQ92626 1479 aa16.48■□□□□ 0.23
COL6A3-207ENST00000433762 GIGYF1O75420 1035 aaPredicted RBP16.48■□□□□ 0.23
COL6A3-207ENST00000433762 EIF2S2P20042 333 aaKnown RBP16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms