RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 KIF1BPQ96EK5 621 aa13.7□□□□□ -0.22
USP4-205ENST00000431357 PPP1R42Q7Z4L9 355 aa13.69□□□□□ -0.22
USP4-205ENST00000431357 RBSNQ9H1K0 784 aa13.69□□□□□ -0.22
USP4-205ENST00000431357 SURF6O75683 361 aaKnown RBP13.69□□□□□ -0.22
USP4-205ENST00000431357 MSNP26038 577 aaKnown RBP13.69□□□□□ -0.22
USP4-205ENST00000431357 PRIM1P49642 420 aaKnown RBP13.69□□□□□ -0.22
USP4-205ENST00000431357 RHPN1Q8TCX5 695 aa13.69□□□□□ -0.22
USP4-205ENST00000431357 IP6K1Q92551 441 aa13.69□□□□□ -0.22
USP4-205ENST00000431357 SYAP1Q96A49 352 aaPredicted RBP13.69□□□□□ -0.22
USP4-205ENST00000431357 PDLIM2Q96JY6 352 aa13.69□□□□□ -0.22
USP4-205ENST00000431357 UNC5CLQ8IV45 518 aa13.68□□□□□ -0.22
USP4-205ENST00000431357 MED1Q15648 1581 aaPredicted RBP13.68□□□□□ -0.22
USP4-205ENST00000431357 EIF4A1P60842 406 aaKnown RBP13.67□□□□□ -0.22
USP4-205ENST00000431357 CNTROBQ8N137 903 aa13.67□□□□□ -0.22
USP4-205ENST00000431357 LTV1Q96GA3 475 aaPredicted RBP13.67□□□□□ -0.22
USP4-205ENST00000431357 PHAXQ9H814 394 aaKnown RBP13.67□□□□□ -0.22
USP4-205ENST00000431357 IL1RAPL2Q9NP60 686 aa13.67□□□□□ -0.22
USP4-205ENST00000431357 TMEM63CQ9P1W3 806 aa13.67□□□□□ -0.22
USP4-205ENST00000431357 WDR33Q9C0J8 1336 aaKnown RBP13.67□□□□□ -0.22
USP4-205ENST00000431357 RBM10P98175 930 aaKnown RBP13.67□□□□□ -0.22
USP4-205ENST00000431357 NUTM2GQ5VZR2 741 aa13.67□□□□□ -0.22
USP4-205ENST00000431357 PI4K2BQ8TCG2 481 aa13.67□□□□□ -0.22
USP4-205ENST00000431357 DNAAF4Q8WXU2 420 aa13.67□□□□□ -0.22
USP4-205ENST00000431357 ADGRL3Q9HAR2 1447 aa13.67□□□□□ -0.22
USP4-205ENST00000431357 RBM27Q9P2N5 1060 aaKnown RBP13.67□□□□□ -0.22
USP4-205ENST00000431357 HDAC5Q9UQL6 1122 aa13.67□□□□□ -0.22
USP4-205ENST00000431357 USP42Q9H9J4 1324 aaKnown RBP13.67□□□□□ -0.22
USP4-205ENST00000431357 SGSM2O43147 1006 aa13.66□□□□□ -0.22
USP4-205ENST00000431357 TPM2P07951 284 aa13.66□□□□□ -0.22
USP4-205ENST00000431357 KCNA6P17658 529 aa13.66□□□□□ -0.22
USP4-205ENST00000431357 NUTM1Q86Y26 1132 aa13.66□□□□□ -0.22
USP4-205ENST00000431357 RAD50Q92878 1312 aa13.66□□□□□ -0.22
USP4-205ENST00000431357 SRGAP3O43295 1099 aa13.66□□□□□ -0.22
USP4-205ENST00000431357 BEND3Q5T5X7 828 aa13.66□□□□□ -0.22
USP4-205ENST00000431357 TTC41PQ6P2S7 1318 aa13.65□□□□□ -0.22
USP4-205ENST00000431357 PHF14O94880 888 aa13.65□□□□□ -0.22
USP4-205ENST00000431357 PHF8Q9UPP1 1060 aa13.65□□□□□ -0.22
USP4-205ENST00000431357 KDM3BQ7LBC6 1761 aa13.65□□□□□ -0.23
USP4-205ENST00000431357 PDIA4P13667 645 aaKnown RBP13.64□□□□□ -0.23
USP4-205ENST00000431357 EIF2S2P20042 333 aaKnown RBP13.64□□□□□ -0.23
USP4-205ENST00000431357 MCM5P33992 734 aa13.64□□□□□ -0.23
USP4-205ENST00000431357 KIAA1211Q6ZU35 1233 aa13.64□□□□□ -0.23
USP4-205ENST00000431357 KCNH5Q8NCM2 988 aa13.64□□□□□ -0.23
USP4-205ENST00000431357 NOL7Q9UMY1 257 aaKnown RBP13.64□□□□□ -0.23
USP4-205ENST00000431357 SYCE3A1L190 88 aa13.64□□□□□ -0.23
USP4-205ENST00000431357 MTX1Q13505 466 aa13.64□□□□□ -0.23
USP4-205ENST00000431357 AKAP4Q5JQC9 854 aa13.64□□□□□ -0.23
USP4-205ENST00000431357 FOXD4L5Q5VV16 416 aaPredicted RBP13.64□□□□□ -0.23
USP4-205ENST00000431357 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.64□□□□□ -0.23
USP4-205ENST00000431357 FOXD4L4Q8WXT5 416 aaPredicted RBP13.64□□□□□ -0.23
USP4-205ENST00000431357 UPF3BQ9BZI7 483 aaKnown RBP13.64□□□□□ -0.23
USP4-205ENST00000431357 OFD1O75665 1012 aa13.63□□□□□ -0.23
USP4-205ENST00000431357 GLRX3O76003 335 aaKnown RBP13.63□□□□□ -0.23
USP4-205ENST00000431357 TERF1P54274 439 aa13.63□□□□□ -0.23
USP4-205ENST00000431357 TEFQ10587 303 aa13.63□□□□□ -0.23
USP4-205ENST00000431357 PLEKHO1Q53GL0 409 aaPredicted RBP13.63□□□□□ -0.23
USP4-205ENST00000431357 KLHL34Q8N239 644 aa13.63□□□□□ -0.23
USP4-205ENST00000431357 USHBP1Q8N6Y0 703 aa13.63□□□□□ -0.23
USP4-205ENST00000431357 RUFY2Q8WXA3 655 aa13.63□□□□□ -0.23
USP4-205ENST00000431357 LSG1Q9H089 658 aaKnown RBP13.63□□□□□ -0.23
USP4-205ENST00000431357 LTN1O94822 1766 aa13.63□□□□□ -0.23
USP4-205ENST00000431357 PI4KAP2A4QPH2 592 aa13.63□□□□□ -0.23
USP4-205ENST00000431357 ALDH1L1O75891 902 aa13.63□□□□□ -0.23
USP4-205ENST00000431357 NBPF7P0C2Y1 421 aaPredicted RBP13.63□□□□□ -0.23
USP4-205ENST00000431357 AMOTQ4VCS5 1084 aa13.63□□□□□ -0.23
USP4-205ENST00000431357 NOL8Q76FK4 1167 aaKnown RBP13.63□□□□□ -0.23
USP4-205ENST00000431357 C14orf37Q86TY3 774 aa13.63□□□□□ -0.23
USP4-205ENST00000431357 PI4KAP1Q8N8J0 262 aa13.63□□□□□ -0.23
USP4-205ENST00000431357 TMEM87AQ8NBN3 555 aa13.63□□□□□ -0.23
USP4-205ENST00000431357 TSPY26PQ9H489 355 aa13.63□□□□□ -0.23
USP4-205ENST00000431357 CHPF2Q9P2E5 772 aa13.63□□□□□ -0.23
USP4-205ENST00000431357 NSFL1CQ9UNZ2 370 aaKnown RBP13.63□□□□□ -0.23
USP4-205ENST00000431357 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.63□□□□□ -0.23
USP4-205ENST00000431357 SNX14Q9Y5W7 946 aa13.63□□□□□ -0.23
USP4-205ENST00000431357 NFAT5O94916 1531 aa13.62□□□□□ -0.23
USP4-205ENST00000431357 FER1L4A9Z1Z3 1794 aa13.62□□□□□ -0.23
USP4-205ENST00000431357 ZNF500O60304 480 aaPredicted RBP13.62□□□□□ -0.23
USP4-205ENST00000431357 NBPF6Q5VWK0 638 aa13.62□□□□□ -0.23
USP4-205ENST00000431357 ERC1Q8IUD2 1116 aa13.62□□□□□ -0.23
USP4-205ENST00000431357 NBPF4Q96M43 638 aa13.62□□□□□ -0.23
USP4-205ENST00000431357 TTC14Q96N46 770 aa13.62□□□□□ -0.23
USP4-205ENST00000431357 DBF4Q9UBU7 674 aaPredicted RBP13.62□□□□□ -0.23
USP4-205ENST00000431357 CCDC39Q9UFE4 941 aa13.62□□□□□ -0.23
USP4-205ENST00000431357 OVOS2A0A0G2JMS6 1433 aa13.62□□□□□ -0.23
USP4-205ENST00000431357 NCAPD2Q15021 1401 aa13.62□□□□□ -0.23
USP4-205ENST00000431357 CRYBG1Q9Y4K1 1723 aa13.61□□□□□ -0.23
USP4-205ENST00000431357 LMO7Q8WWI1 1683 aa13.61□□□□□ -0.23
USP4-205ENST00000431357 BTBD11A6QL63 1104 aa13.61□□□□□ -0.23
USP4-205ENST00000431357 GPATCH3Q96I76 525 aa13.61□□□□□ -0.23
USP4-205ENST00000431357 IL25Q9H293 177 aa13.61□□□□□ -0.23
USP4-205ENST00000431357 LGR6Q9HBX8 967 aa13.61□□□□□ -0.23
USP4-205ENST00000431357 LIMCH1Q9UPQ0 1083 aa13.61□□□□□ -0.23
USP4-205ENST00000431357 PHRF1Q9P1Y6 1649 aaKnown RBP13.61□□□□□ -0.23
USP4-205ENST00000431357 CLASRPQ8N2M8 674 aaKnown RBP13.61□□□□□ -0.23
USP4-205ENST00000431357 LETM1O95202 739 aaPredicted RBP13.6□□□□□ -0.23
USP4-205ENST00000431357 OS9Q13438 667 aaPredicted RBP13.6□□□□□ -0.23
USP4-205ENST00000431357 CHAMP1Q96JM3 812 aa13.6□□□□□ -0.23
USP4-205ENST00000431357 ATP6V1DQ9Y5K8 247 aa13.6□□□□□ -0.23
USP4-205ENST00000431357 ADCY9O60503 1353 aa13.6□□□□□ -0.23
USP4-205ENST00000431357 MAP4K4O95819 1239 aaPredicted RBP13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 93.1 ms